RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 FHL3Q13643 280 aa4.55□□□□□ -1.68
HMGB3-202ENST00000419110 TMEM241Q24JQ0 296 aa4.55□□□□□ -1.68
HMGB3-202ENST00000419110 TM4SF20Q53R12 229 aa4.55□□□□□ -1.68
HMGB3-202ENST00000419110 GOLT1AQ6ZVE7 132 aa4.55□□□□□ -1.68
HMGB3-202ENST00000419110 TCF24Q7RTU0 167 aa4.55□□□□□ -1.68
HMGB3-202ENST00000419110 EXOC3-AS1Q8N2X6 119 aa4.55□□□□□ -1.68
HMGB3-202ENST00000419110 ARL6IP6Q8N6S5 226 aa4.55□□□□□ -1.68
HMGB3-202ENST00000419110 TMEM75Q8N9X5 138 aa4.55□□□□□ -1.68
HMGB3-202ENST00000419110 OR11H1Q8NG94 326 aa4.55□□□□□ -1.68
HMGB3-202ENST00000419110 OR1N2Q8NGR9 330 aa4.55□□□□□ -1.68
HMGB3-202ENST00000419110 C16orf92Q96LL3 132 aa4.55□□□□□ -1.68
HMGB3-202ENST00000419110 IGF2BP2-AS1Q96M15 143 aa4.55□□□□□ -1.68
HMGB3-202ENST00000419110 NDFIP1Q9BT67 221 aa4.55□□□□□ -1.68
HMGB3-202ENST00000419110 RHPN1-AS1Q9BWJ2 59 aa4.55□□□□□ -1.68
HMGB3-202ENST00000419110 RPS10P5Q9NQ39 176 aa4.55□□□□□ -1.68
HMGB3-202ENST00000419110 ZNF331Q9NQX6 463 aaPredicted RBP4.55□□□□□ -1.68
HMGB3-202ENST00000419110 BIN3Q9NQY0 253 aa4.55□□□□□ -1.68
HMGB3-202ENST00000419110 SMPXQ9UHP9 88 aa4.55□□□□□ -1.68
HMGB3-202ENST00000419110 EPDR1Q9UM22 224 aa4.55□□□□□ -1.68
HMGB3-202ENST00000419110 A0A087WWC5 75 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 C2orf70A6NJV1 201 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 H7BYZ3 331 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 ISLRO14498 428 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 CHEK1O14757 476 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 TSPAN4O14817 238 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 PPP1R2P9O14990 202 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 SCO1O75880 301 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 PF4P02776 101 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 MT-ND4LP03901 98 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 CT45A10P0DMU9 189 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 MGST1P10620 155 aaKnown RBP4.54□□□□□ -1.68
HMGB3-202ENST00000419110 ID1P41134 155 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 RPL23P62829 140 aaKnown RBP4.54□□□□□ -1.68
HMGB3-202ENST00000419110 FOXL1Q12952 345 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 TMEM183BQ1AE95 376 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 TCTEX1D4Q5JR98 221 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 C18orf65Q6ZTR6 163 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 LINC01551Q86U37 167 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 NDUFA11Q86Y39 141 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 GBGT1Q8N5D6 347 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP4.54□□□□□ -1.68
HMGB3-202ENST00000419110 C15orf54Q8N8G6 183 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 C11orf44Q8N8P7 122 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.54□□□□□ -1.68
HMGB3-202ENST00000419110 ZNF738Q8NE65 137 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 OR9G4Q8NGQ1 327 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 ISOC2Q96AB3 205 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 CITED2Q99967 270 aaPredicted RBP4.54□□□□□ -1.68
HMGB3-202ENST00000419110 CTDSP1Q9GZU7 261 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 SDF2L1Q9HCN8 221 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 SMCO4Q9NRQ5 59 aa4.54□□□□□ -1.68
HMGB3-202ENST00000419110 TRBV20OR9-2A0A075B6H5 130 aa4.53□□□□□ -1.68
HMGB3-202ENST00000419110 IGKV2-40A0A087WW87 121 aaPredicted RBP4.53□□□□□ -1.68
HMGB3-202ENST00000419110 TRBV6-1A0A0K0K1D8 114 aa4.53□□□□□ -1.68
HMGB3-202ENST00000419110 C7orf77A4D0Y5 90 aa4.53□□□□□ -1.68
HMGB3-202ENST00000419110 DIRC3C9JPN6 131 aa4.53□□□□□ -1.68
HMGB3-202ENST00000419110 M0R3E3 92 aa4.53□□□□□ -1.68
HMGB3-202ENST00000419110 CCL24O00175 119 aa4.53□□□□□ -1.68
HMGB3-202ENST00000419110 LTAP01374 205 aa4.53□□□□□ -1.68
HMGB3-202ENST00000419110 IGKV2D-40P01614 121 aaPredicted RBP4.53□□□□□ -1.68
HMGB3-202ENST00000419110 APOHP02749 345 aaPredicted RBP4.53□□□□□ -1.68
HMGB3-202ENST00000419110 S100PP25815 95 aa4.53□□□□□ -1.68
HMGB3-202ENST00000419110 SNRPD3P62318 126 aaKnown RBP4.53□□□□□ -1.68
HMGB3-202ENST00000419110 PAFAH1B2P68402 229 aa4.53□□□□□ -1.68
HMGB3-202ENST00000419110 FLI1Q01543 452 aaPredicted RBP4.53□□□□□ -1.68
HMGB3-202ENST00000419110 PSG3Q16557 428 aa4.53□□□□□ -1.68
HMGB3-202ENST00000419110 NSUN5P1Q3KNT7 163 aa4.53□□□□□ -1.68
HMGB3-202ENST00000419110 RNF212Q495C1 297 aa4.53□□□□□ -1.68
HMGB3-202ENST00000419110 KCNIP4Q6PIL6 250 aa4.53□□□□□ -1.68
HMGB3-202ENST00000419110 ATRAIDQ6UW56 229 aa4.53□□□□□ -1.68
HMGB3-202ENST00000419110 BAGE2Q86Y30 109 aa4.53□□□□□ -1.68
HMGB3-202ENST00000419110 CBLN2Q8IUK8 224 aa4.53□□□□□ -1.68
HMGB3-202ENST00000419110 ANAPC16Q96DE5 110 aa4.53□□□□□ -1.68
HMGB3-202ENST00000419110 RAX2Q96IS3 184 aa4.53□□□□□ -1.68
HMGB3-202ENST00000419110 C17orf77Q96MU5 243 aa4.53□□□□□ -1.68
HMGB3-202ENST00000419110 IGKV3-7A0A075B6H7 116 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 TRAV2A0A0B4J234 112 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 TRAV34A0A0B4J273 112 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 RBAKDNA6NC62 111 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 CXorf65A6NEN9 183 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 PGPEP1LA6NFU8 196 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 DNASE2O00115 360 aaPredicted RBP4.52□□□□□ -1.69
HMGB3-202ENST00000419110 OVOL1O14753 267 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 FOLR2P14207 255 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 RPL19P84098 196 aaKnown RBP4.52□□□□□ -1.69
HMGB3-202ENST00000419110 SRSF2Q01130 221 aaKnown RBP4.52□□□□□ -1.69
HMGB3-202ENST00000419110 KLF5Q13887 457 aaPredicted RBP4.52□□□□□ -1.69
HMGB3-202ENST00000419110 IBA57Q5T440 356 aaKnown RBP4.52□□□□□ -1.69
HMGB3-202ENST00000419110 TMEM78Q5T7P6 136 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 PRR27Q6MZM9 219 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 TMEM88Q6PEY1 159 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 PRNTQ86SH4 94 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 RNF182Q8N6D2 247 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 NHLRC2Q8NBF2 726 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 OR10G8Q8NGN5 311 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 OR10J6PQ8NGY7 276 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 SFRP2Q96HF1 295 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 BTF3L4Q96K17 158 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 DUX3Q96PT4 197 aa4.52□□□□□ -1.69
HMGB3-202ENST00000419110 ZNF492Q9P255 531 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms