RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 MCTS1Q9ULC4 181 aaKnown RBP2.62□□□□□ -1.99
VPS54-204ENST00000416400 KIF26AQ9ULI4 1882 aaPredicted RBP2.62□□□□□ -1.99
VPS54-204ENST00000416400 NUP98P52948 1817 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 IGHV3OR16-8A0A075B7F1 116 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 C3orf85A0A1B0GTC6 90 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 A0A1B0GV50 99 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 hADV38S2A0JD32 116 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 IGSF23A1L1A6 192 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 FAM24AA6NFZ4 105 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 K7EM74 188 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 SDCBPO00560 298 aaPredicted RBP2.61□□□□□ -1.99
VPS54-204ENST00000416400 CRXO43186 299 aaPredicted RBP2.61□□□□□ -1.99
VPS54-204ENST00000416400 GNG7O60262 68 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 IGHV1-46P01743 117 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 S100A7P31151 101 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 DYNLT3P51808 116 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 CCL23P55773 120 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 UBE2G1P62253 170 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 PSG9Q00887 426 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 PRDX1Q06830 199 aaKnown RBP2.61□□□□□ -1.99
VPS54-204ENST00000416400 AESQ08117 197 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 ZNF141Q15928 474 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 CEACAM21Q3KPI0 293 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 TDRG1Q3Y452 100 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 SPINT4Q6UDR6 99 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 LCN15Q6UWW0 184 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 Q6ZS92 163 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 DAZ4Q86SG3 579 aaKnown RBP2.61□□□□□ -1.99
VPS54-204ENST00000416400 BPIFA4PQ86YQ2 179 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 ZNF439Q8NDP4 499 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 OR4X2Q8NGF9 303 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 C18orf32Q8TCD1 76 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 ZNF418Q8TF45 676 aaPredicted RBP2.61□□□□□ -1.99
VPS54-204ENST00000416400 KLK6Q92876 244 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 CHCHD1Q96BP2 118 aaKnown RBP2.61□□□□□ -1.99
VPS54-204ENST00000416400 TMEM70Q9BUB7 260 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 COMMD5Q9GZQ3 224 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 DAZ1Q9NQZ3 744 aaKnown RBP2.61□□□□□ -1.99
VPS54-204ENST00000416400 RPRMQ9NS64 109 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 JPT1Q9UK76 154 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 Q9Y3F1 56 aa2.61□□□□□ -1.99
VPS54-204ENST00000416400 MYO18AQ92614 2054 aaKnown RBP2.61□□□□□ -1.99
VPS54-204ENST00000416400 RGPD3A6NKT7 1758 aaPredicted RBP2.6□□□□□ -1.99
VPS54-204ENST00000416400 RGPD4Q7Z3J3 1758 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 LOC107986453A0A1B0GWG9 222 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 CD300LBA8K4G0 201 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 C9JCJ5 164 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 F5H5K5 113 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 GPR75O95800 540 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 CXorf1O96002 111 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 C3orf79P0CE67 100 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 SMIM13P0DJ93 91 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 HIST1H1EP10412 219 aaKnown RBP2.6□□□□□ -1.99
VPS54-204ENST00000416400 CPMP14384 443 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 BLVRBP30043 206 aaPredicted RBP2.6□□□□□ -1.99
VPS54-204ENST00000416400 PEBP1P30086 187 aaKnown RBP2.6□□□□□ -1.99
VPS54-204ENST00000416400 CA7P43166 264 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 RPS24P62847 133 aaKnown RBP2.6□□□□□ -1.99
VPS54-204ENST00000416400 MEF2CQ06413 473 aaPredicted RBP2.6□□□□□ -1.99
VPS54-204ENST00000416400 SMAGPQ0VAQ4 97 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 PDGFRLQ15198 375 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 RTL8BQ17RB0 113 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 CCSMST1Q4G0I0 132 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 IGFL1Q6UW32 110 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 C16orf47Q6ZP98 133 aaPredicted RBP2.6□□□□□ -1.99
VPS54-204ENST00000416400 FOXI2Q6ZQN5 318 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 LYZL2Q7Z4W2 148 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 DOLPP1Q86YN1 238 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 TTC9CQ8N5M4 171 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 OR8B3Q8NGG8 313 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 OR10AC1Q8NH08 325 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 OR10AG1Q8NH19 301 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 PP6455Q8WZ26 134 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 LSM10Q969L4 123 aaKnown RBP2.6□□□□□ -1.99
VPS54-204ENST00000416400 FMC1Q96HJ9 113 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 OR8B2Q96RD0 313 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 FAM103A1Q9BTL3 118 aaKnown RBP2.6□□□□□ -1.99
VPS54-204ENST00000416400 PECRQ9BY49 303 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 ULBP3Q9BZM4 244 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 TMEM126AQ9H061 195 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 TMEM222Q9H0R3 208 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 TXNIPQ9H3M7 391 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 C11orf1Q9H5F2 150 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 OSTCQ9NRP0 149 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 MED29Q9NX70 200 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 TAAR3PQ9P1P4 343 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 TAC3Q9UHF0 121 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 HSPB8Q9UJY1 196 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 ARL2-SNX15V9GYD0 113 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 ROBO1Q9Y6N7 1651 aa2.6□□□□□ -1.99
VPS54-204ENST00000416400 COL27A1Q8IZC6 1860 aaPredicted RBP2.59□□□□□ -1.99
VPS54-204ENST00000416400 TRAV36DV7A0A075B6V5 113 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 TRGV10A0A0A0MS01 117 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP2.59□□□□□ -1.99
VPS54-204ENST00000416400 A0A0J9YY10 115 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 TEX50A0A1B0GTY4 177 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 A0A1B0GX78 115 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 TMEM213A2RRL7 107 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 OR2T8A6NH00 312 aa2.59□□□□□ -1.99
VPS54-204ENST00000416400 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.59□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms