RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 MPC2O95563 127 aa13.56□□□□□ -0.24
SF3A1-202ENST00000411423 INSP01308 110 aa13.56□□□□□ -0.24
SF3A1-202ENST00000411423 AMBPP02760 352 aa13.56□□□□□ -0.24
SF3A1-202ENST00000411423 PYYP10082 97 aa13.56□□□□□ -0.24
SF3A1-202ENST00000411423 SLC25A31Q9H0C2 315 aa13.56□□□□□ -0.24
SF3A1-202ENST00000411423 MPDU1O75352 247 aa13.55□□□□□ -0.24
SF3A1-202ENST00000411423 NDUFB4O95168 129 aa13.55□□□□□ -0.24
SF3A1-202ENST00000411423 TCTAP57738 103 aa13.55□□□□□ -0.24
SF3A1-202ENST00000411423 CYCSP99999 105 aaKnown RBP13.55□□□□□ -0.24
SF3A1-202ENST00000411423 MIR17HGQ75NE6 70 aa13.55□□□□□ -0.24
SF3A1-202ENST00000411423 TMEM208Q9BTX3 173 aa13.55□□□□□ -0.24
SF3A1-202ENST00000411423 SLC25A2Q9BXI2 301 aa13.55□□□□□ -0.24
SF3A1-202ENST00000411423 WDR61Q9GZS3 305 aaKnown RBP13.55□□□□□ -0.24
SF3A1-202ENST00000411423 TRBV19A0A075B6N1 114 aa13.54□□□□□ -0.24
SF3A1-202ENST00000411423 FAM167A-AS1Q96KT0 104 aa13.54□□□□□ -0.24
SF3A1-202ENST00000411423 NIPSNAP3BQ9BS92 247 aa13.54□□□□□ -0.24
SF3A1-202ENST00000411423 ALG5Q9Y673 324 aa13.54□□□□□ -0.24
SF3A1-202ENST00000411423 M0R3E3 92 aa13.53□□□□□ -0.24
SF3A1-202ENST00000411423 TMEM14CQ9P0S9 112 aa13.53□□□□□ -0.24
SF3A1-202ENST00000411423 MBD2Q9UBB5 411 aa13.53□□□□□ -0.24
SF3A1-202ENST00000411423 HSPB11Q9Y547 144 aa13.53□□□□□ -0.24
SF3A1-202ENST00000411423 CDKN1BP46527 198 aa13.52□□□□□ -0.25
SF3A1-202ENST00000411423 FCN2Q15485 313 aa13.52□□□□□ -0.25
SF3A1-202ENST00000411423 GUK1Q16774 197 aa13.52□□□□□ -0.25
SF3A1-202ENST00000411423 SMIM3Q9BZL3 60 aa13.52□□□□□ -0.25
SF3A1-202ENST00000411423 WFDC1Q9HC57 220 aa13.52□□□□□ -0.25
SF3A1-202ENST00000411423 DNAH2Q9P225 4427 aa13.52□□□□□ -0.25
SF3A1-202ENST00000411423 ZNF253O75346 499 aa13.51□□□□□ -0.25
SF3A1-202ENST00000411423 CT45A10P0DMU9 189 aa13.51□□□□□ -0.25
SF3A1-202ENST00000411423 ATP5SQ99766 215 aa13.51□□□□□ -0.25
SF3A1-202ENST00000411423 NPIPB6E9PJ23 425 aa13.5□□□□□ -0.25
SF3A1-202ENST00000411423 HIST1H1EP10412 219 aaKnown RBP13.5□□□□□ -0.25
SF3A1-202ENST00000411423 ERCC8Q13216 396 aa13.5□□□□□ -0.25
SF3A1-202ENST00000411423 GFI1BQ5VTD9 330 aa13.5□□□□□ -0.25
SF3A1-202ENST00000411423 EXOC3-AS1Q8N2X6 119 aa13.5□□□□□ -0.25
SF3A1-202ENST00000411423 OR10J6PQ8NGY7 276 aa13.5□□□□□ -0.25
SF3A1-202ENST00000411423 BLNKQ8WV28 456 aa13.5□□□□□ -0.25
SF3A1-202ENST00000411423 LINC01587Q99440 93 aa13.5□□□□□ -0.25
SF3A1-202ENST00000411423 PPP1R14DQ9NXH3 145 aa13.5□□□□□ -0.25
SF3A1-202ENST00000411423 HTN3P15516 51 aa13.49□□□□□ -0.25
SF3A1-202ENST00000411423 RPL12P30050 165 aaKnown RBP13.49□□□□□ -0.25
SF3A1-202ENST00000411423 TSPOP30536 169 aa13.49□□□□□ -0.25
SF3A1-202ENST00000411423 OXA1LQ15070 435 aa13.49□□□□□ -0.25
SF3A1-202ENST00000411423 ZNF503Q96F45 646 aa13.49□□□□□ -0.25
SF3A1-202ENST00000411423 TEX48A0A1B0GUV7 120 aa13.48□□□□□ -0.25
SF3A1-202ENST00000411423 J3KRW8 73 aa13.48□□□□□ -0.25
SF3A1-202ENST00000411423 EIF3GO75821 320 aaKnown RBP eCLIP13.48□□□□□ -0.25
SF3A1-202ENST00000411423 TAS2R60P59551 318 aa13.48□□□□□ -0.25
SF3A1-202ENST00000411423 PTTG1O95997 202 aa13.47□□□□□ -0.25
SF3A1-202ENST00000411423 HTN1P15515 57 aa13.47□□□□□ -0.25
SF3A1-202ENST00000411423 DAD1P61803 113 aa13.47□□□□□ -0.25
SF3A1-202ENST00000411423 TMEM256Q8N2U0 113 aa13.47□□□□□ -0.25
SF3A1-202ENST00000411423 FXYD5Q96DB9 178 aa13.47□□□□□ -0.25
SF3A1-202ENST00000411423 MRPL53Q96EL3 112 aaKnown RBP13.47□□□□□ -0.25
SF3A1-202ENST00000411423 NDUFAF3Q9BU61 184 aa13.47□□□□□ -0.25
SF3A1-202ENST00000411423 TIMM9Q9Y5J7 89 aa13.47□□□□□ -0.25
SF3A1-202ENST00000411423 OR10J4P0C629 311 aa13.46□□□□□ -0.25
SF3A1-202ENST00000411423 PET100P0DJ07 73 aa13.46□□□□□ -0.25
SF3A1-202ENST00000411423 PDE6HQ13956 83 aa13.46□□□□□ -0.25
SF3A1-202ENST00000411423 RNASE8Q8TDE3 154 aaKnown RBP13.46□□□□□ -0.25
SF3A1-202ENST00000411423 PHYHIPLQ96FC7 376 aa13.46□□□□□ -0.25
SF3A1-202ENST00000411423 FAM19A4Q96LR4 140 aa13.46□□□□□ -0.25
SF3A1-202ENST00000411423 OR51M1Q9H341 326 aa13.46□□□□□ -0.25
SF3A1-202ENST00000411423 FUT9Q9Y231 359 aa13.46□□□□□ -0.25
SF3A1-202ENST00000411423 LYRM9A8MSI8 78 aa13.45□□□□□ -0.26
SF3A1-202ENST00000411423 DEFB130BP0DP73 79 aa13.45□□□□□ -0.26
SF3A1-202ENST00000411423 DEFB130AP0DP74 79 aa13.45□□□□□ -0.26
SF3A1-202ENST00000411423 ICAM4Q14773 271 aa13.45□□□□□ -0.26
SF3A1-202ENST00000411423 Q5BKY6 102 aa13.45□□□□□ -0.26
SF3A1-202ENST00000411423 FFAR4Q5NUL3 377 aa13.45□□□□□ -0.26
SF3A1-202ENST00000411423 ODF3Q96PU9 254 aa13.45□□□□□ -0.26
SF3A1-202ENST00000411423 MRPL32Q9BYC8 188 aaKnown RBP13.45□□□□□ -0.26
SF3A1-202ENST00000411423 AGPAT4-IT1Q9H0P7 198 aa13.45□□□□□ -0.26
SF3A1-202ENST00000411423 FAT2Q9NYQ8 4349 aa13.45□□□□□ -0.26
SF3A1-202ENST00000411423 DNAH17Q9UFH2 4485 aa13.45□□□□□ -0.26
SF3A1-202ENST00000411423 IGKV2-40A0A087WW87 121 aaPredicted RBP13.44□□□□□ -0.26
SF3A1-202ENST00000411423 TRAV12-3A0A0B4J271 114 aa13.44□□□□□ -0.26
SF3A1-202ENST00000411423 C17orf112F2Z3M2 114 aa13.44□□□□□ -0.26
SF3A1-202ENST00000411423 IGKV2D-40P01614 121 aaPredicted RBP13.44□□□□□ -0.26
SF3A1-202ENST00000411423 NBEAP1P0C6P0 100 aa13.44□□□□□ -0.26
SF3A1-202ENST00000411423 FAM122CQ6P4D5 195 aa13.44□□□□□ -0.26
SF3A1-202ENST00000411423 TMEM88Q6PEY1 159 aa13.44□□□□□ -0.26
SF3A1-202ENST00000411423 RNF141Q8WVD5 230 aa13.44□□□□□ -0.26
SF3A1-202ENST00000411423 C16orf74Q96GX8 76 aa13.44□□□□□ -0.26
SF3A1-202ENST00000411423 PAXXQ9BUH6 204 aa13.44□□□□□ -0.26
SF3A1-202ENST00000411423 H7BYZ3 331 aa13.43□□□□□ -0.26
SF3A1-202ENST00000411423 LEPP41159 167 aa13.43□□□□□ -0.26
SF3A1-202ENST00000411423 Q6ZQT7 251 aa13.43□□□□□ -0.26
SF3A1-202ENST00000411423 VGLL1Q99990 258 aa13.43□□□□□ -0.26
SF3A1-202ENST00000411423 C20orf144Q9BQM9 153 aa13.43□□□□□ -0.26
SF3A1-202ENST00000411423 KCNIP2Q9NS61 270 aa13.43□□□□□ -0.26
SF3A1-202ENST00000411423 PRELID1Q9Y255 219 aa13.43□□□□□ -0.26
SF3A1-202ENST00000411423 CD300CQ08708 224 aa13.42□□□□□ -0.26
SF3A1-202ENST00000411423 BTN1A1Q13410 526 aa13.42□□□□□ -0.26
SF3A1-202ENST00000411423 PRR9Q5T870 116 aa13.42□□□□□ -0.26
SF3A1-202ENST00000411423 TMEM263Q8WUH6 116 aaKnown RBP13.42□□□□□ -0.26
SF3A1-202ENST00000411423 NOP10Q9NPE3 64 aaKnown RBP13.42□□□□□ -0.26
SF3A1-202ENST00000411423 KLLNB2CW77 178 aa13.41□□□□□ -0.26
SF3A1-202ENST00000411423 IFNA5P01569 189 aa13.41□□□□□ -0.26
SF3A1-202ENST00000411423 POM121L12Q8N7R1 296 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 1198.8 ms