RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 UBE2G1P62253 170 aa10.32□□□□□ -0.76
LIMS1-204ENST00000409441 NSUN5P1Q3KNT7 163 aa10.32□□□□□ -0.76
LIMS1-204ENST00000409441 SHISA2Q6UWI4 295 aa10.32□□□□□ -0.76
LIMS1-204ENST00000409441 BAGE2Q86Y30 109 aa10.32□□□□□ -0.76
LIMS1-204ENST00000409441 NDUFA11Q86Y39 141 aa10.32□□□□□ -0.76
LIMS1-204ENST00000409441 EEF1AKMT3Q96AZ1 226 aa10.32□□□□□ -0.76
LIMS1-204ENST00000409441 TXN2Q99757 166 aa10.32□□□□□ -0.76
LIMS1-204ENST00000409441 GPR61Q9BZJ8 451 aa10.32□□□□□ -0.76
LIMS1-204ENST00000409441 OTORQ9NRC9 128 aa10.32□□□□□ -0.76
LIMS1-204ENST00000409441 ADARB2-AS1A8MUL3 147 aa10.31□□□□□ -0.76
LIMS1-204ENST00000409441 DNLZQ5SXM8 178 aa10.31□□□□□ -0.76
LIMS1-204ENST00000409441 GFI1BQ5VTD9 330 aa10.31□□□□□ -0.76
LIMS1-204ENST00000409441 BPIFA4PQ86YQ2 179 aa10.31□□□□□ -0.76
LIMS1-204ENST00000409441 KLHL30-AS1Q8NEE0 82 aa10.31□□□□□ -0.76
LIMS1-204ENST00000409441 RNF125Q96EQ8 232 aa10.31□□□□□ -0.76
LIMS1-204ENST00000409441 FMC1Q96HJ9 113 aa10.31□□□□□ -0.76
LIMS1-204ENST00000409441 RNASE7Q9H1E1 156 aaKnown RBP10.31□□□□□ -0.76
LIMS1-204ENST00000409441 Q9H3A6 140 aa10.31□□□□□ -0.76
LIMS1-204ENST00000409441 C21orf62Q9NYP8 219 aa10.31□□□□□ -0.76
LIMS1-204ENST00000409441 STAB1Q9NY15 2570 aa10.31□□□□□ -0.76
LIMS1-204ENST00000409441 TRBV7-1A0A0A6YYK4 115 aa10.3□□□□□ -0.76
LIMS1-204ENST00000409441 SMIM27A0A1W2PRY6 76 aa10.3□□□□□ -0.76
LIMS1-204ENST00000409441 CLEC3BP05452 202 aa10.3□□□□□ -0.76
LIMS1-204ENST00000409441 WDR73Q6P4I2 378 aa10.3□□□□□ -0.76
LIMS1-204ENST00000409441 LYPD1Q8N2G4 141 aa10.3□□□□□ -0.76
LIMS1-204ENST00000409441 ZNF502Q8TBZ5 544 aa10.3□□□□□ -0.76
LIMS1-204ENST00000409441 C4orf3Q8WVX3 66 aa10.3□□□□□ -0.76
LIMS1-204ENST00000409441 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.29□□□□□ -0.76
LIMS1-204ENST00000409441 TRBV6-1A0A0K0K1D8 114 aa10.29□□□□□ -0.76
LIMS1-204ENST00000409441 PCP4L1A6NKN8 68 aa10.29□□□□□ -0.76
LIMS1-204ENST00000409441 MT-ND6P03923 174 aa10.29□□□□□ -0.76
LIMS1-204ENST00000409441 LGALS1P09382 135 aaKnown RBP10.29□□□□□ -0.76
LIMS1-204ENST00000409441 GNG5P63218 68 aa10.29□□□□□ -0.76
LIMS1-204ENST00000409441 CLEC19AQ6UXS0 136 aa10.29□□□□□ -0.76
LIMS1-204ENST00000409441 C8orf86Q6ZUL3 223 aa10.29□□□□□ -0.76
LIMS1-204ENST00000409441 OR8I2Q8N0Y5 310 aa10.29□□□□□ -0.76
LIMS1-204ENST00000409441 OR4F17Q8NGA8 305 aa10.29□□□□□ -0.76
LIMS1-204ENST00000409441 OR10D4PQ8NGN7 298 aa10.29□□□□□ -0.76
LIMS1-204ENST00000409441 LINC00479Q96M42 142 aa10.29□□□□□ -0.76
LIMS1-204ENST00000409441 CCDC140Q96MF4 163 aa10.29□□□□□ -0.76
LIMS1-204ENST00000409441 GPR82Q96P67 336 aa10.29□□□□□ -0.76
LIMS1-204ENST00000409441 GNB1LQ9BYB4 327 aa10.29□□□□□ -0.76
LIMS1-204ENST00000409441 NIT2Q9NQR4 276 aa10.29□□□□□ -0.76
LIMS1-204ENST00000409441 PEF1Q9UBV8 284 aaKnown RBP10.29□□□□□ -0.76
LIMS1-204ENST00000409441 ZNF705GA8MUZ8 300 aaPredicted RBP10.29□□□□□ -0.76
LIMS1-204ENST00000409441 GATCO43716 136 aaKnown RBP10.29□□□□□ -0.76
LIMS1-204ENST00000409441 TCRAP04437 139 aa10.29□□□□□ -0.76
LIMS1-204ENST00000409441 IL4P05112 153 aa10.29□□□□□ -0.76
LIMS1-204ENST00000409441 S100A7P31151 101 aa10.29□□□□□ -0.76
LIMS1-204ENST00000409441 Q56UQ5 140 aa10.29□□□□□ -0.76
LIMS1-204ENST00000409441 LEMD1Q68G75 181 aa10.29□□□□□ -0.76
LIMS1-204ENST00000409441 GRAMD2BQ96HH9 432 aa10.29□□□□□ -0.76
LIMS1-204ENST00000409441 HIST1H2BLQ99880 126 aa10.29□□□□□ -0.76
LIMS1-204ENST00000409441 ZNF586Q9NXT0 402 aa10.29□□□□□ -0.76
LIMS1-204ENST00000409441 TRAV34A0A0B4J273 112 aa10.28□□□□□ -0.76
LIMS1-204ENST00000409441 IZUMO1RA6ND01 250 aa10.28□□□□□ -0.76
LIMS1-204ENST00000409441 F8W735 103 aaPredicted RBP10.28□□□□□ -0.76
LIMS1-204ENST00000409441 TRBV12-3P01733 135 aa10.28□□□□□ -0.76
LIMS1-204ENST00000409441 FABP4P15090 132 aa10.28□□□□□ -0.76
LIMS1-204ENST00000409441 DEFB136Q30KP8 78 aa10.28□□□□□ -0.76
LIMS1-204ENST00000409441 PDZD11Q5EBL8 140 aa10.28□□□□□ -0.76
LIMS1-204ENST00000409441 OR1N2Q8NGR9 330 aa10.28□□□□□ -0.76
LIMS1-204ENST00000409441 MLST8Q9BVC4 326 aa10.28□□□□□ -0.76
LIMS1-204ENST00000409441 MRPL18Q9H0U6 180 aaKnown RBP10.28□□□□□ -0.76
LIMS1-204ENST00000409441 ZNF492Q9P255 531 aa10.28□□□□□ -0.76
LIMS1-204ENST00000409441 TRBV19A0A075B6N1 114 aa10.27□□□□□ -0.77
LIMS1-204ENST00000409441 OR2T8A6NH00 312 aa10.27□□□□□ -0.77
LIMS1-204ENST00000409441 MRPS12O15235 138 aaKnown RBP10.27□□□□□ -0.77
LIMS1-204ENST00000409441 LTAP01374 205 aa10.27□□□□□ -0.77
LIMS1-204ENST00000409441 IGLC2P0DOY2 106 aa10.27□□□□□ -0.77
LIMS1-204ENST00000409441 GPR183P32249 361 aa10.27□□□□□ -0.77
LIMS1-204ENST00000409441 ADMP35318 185 aa10.27□□□□□ -0.77
LIMS1-204ENST00000409441 PYY3Q5JQD4 70 aa10.27□□□□□ -0.77
LIMS1-204ENST00000409441 FAM209BQ5JX69 171 aa10.27□□□□□ -0.77
LIMS1-204ENST00000409441 RASL11AQ6T310 242 aa10.27□□□□□ -0.77
LIMS1-204ENST00000409441 OR11H1Q8NG94 326 aa10.27□□□□□ -0.77
LIMS1-204ENST00000409441 CMTM2Q8TAZ6 248 aa10.27□□□□□ -0.77
LIMS1-204ENST00000409441 RAX2Q96IS3 184 aa10.27□□□□□ -0.77
LIMS1-204ENST00000409441 PACRGQ96M98 296 aaPredicted RBP10.27□□□□□ -0.77
LIMS1-204ENST00000409441 DUX3Q96PT4 197 aa10.27□□□□□ -0.77
LIMS1-204ENST00000409441 ATP6V0BQ99437 205 aa10.27□□□□□ -0.77
LIMS1-204ENST00000409441 CCL24O00175 119 aa10.26□□□□□ -0.77
LIMS1-204ENST00000409441 CTSGP08311 255 aa10.26□□□□□ -0.77
LIMS1-204ENST00000409441 CBLN1P23435 193 aa10.26□□□□□ -0.77
LIMS1-204ENST00000409441 PDE6HQ13956 83 aa10.26□□□□□ -0.77
LIMS1-204ENST00000409441 CT83Q5H943 113 aa10.26□□□□□ -0.77
LIMS1-204ENST00000409441 NHLRC2Q8NBF2 726 aa10.26□□□□□ -0.77
LIMS1-204ENST00000409441 NUDT10Q8NFP7 164 aa10.26□□□□□ -0.77
LIMS1-204ENST00000409441 DPF1Q92782 380 aa10.26□□□□□ -0.77
LIMS1-204ENST00000409441 TMEM18Q96B42 140 aa10.26□□□□□ -0.77
LIMS1-204ENST00000409441 NUDT11Q96G61 164 aa10.26□□□□□ -0.77
LIMS1-204ENST00000409441 IGHV4OR15-8A0A075B7B6 117 aa10.25□□□□□ -0.77
LIMS1-204ENST00000409441 A0A087WW49 117 aa10.25□□□□□ -0.77
LIMS1-204ENST00000409441 SNURFLB1AK76 121 aa10.25□□□□□ -0.77
LIMS1-204ENST00000409441 AMBPP02760 352 aa10.25□□□□□ -0.77
LIMS1-204ENST00000409441 SNRPCP09234 159 aaKnown RBP10.25□□□□□ -0.77
LIMS1-204ENST00000409441 ARL3P36405 182 aa10.25□□□□□ -0.77
LIMS1-204ENST00000409441 USF2Q15853 346 aaPredicted RBP10.25□□□□□ -0.77
LIMS1-204ENST00000409441 ARL6IP6Q8N6S5 226 aa10.25□□□□□ -0.77
LIMS1-204ENST00000409441 RPH3ALQ9UNE2 315 aa10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 110.3 ms