RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 BCL3P20749 454 aa4.34□□□□□ -1.71
CLK1-202ENST00000409403 FCGR2BP31994 310 aaPredicted RBP4.34□□□□□ -1.71
CLK1-202ENST00000409403 ATP5IP56385 69 aaPredicted RBP4.34□□□□□ -1.71
CLK1-202ENST00000409403 PSG5Q15238 335 aa4.34□□□□□ -1.71
CLK1-202ENST00000409403 KRTAP27-1Q3LI81 207 aa4.34□□□□□ -1.71
CLK1-202ENST00000409403 GCSAMLQ5JQS6 135 aa4.34□□□□□ -1.71
CLK1-202ENST00000409403 MIC13Q5XKP0 118 aa4.34□□□□□ -1.71
CLK1-202ENST00000409403 RPRMLQ8N4K4 120 aa4.34□□□□□ -1.71
CLK1-202ENST00000409403 DRAM1Q8N682 238 aa4.34□□□□□ -1.71
CLK1-202ENST00000409403 TEX29Q8N6K0 151 aa4.34□□□□□ -1.71
CLK1-202ENST00000409403 PIGCQ92535 297 aa4.34□□□□□ -1.71
CLK1-202ENST00000409403 MGST2Q99735 147 aa4.34□□□□□ -1.71
CLK1-202ENST00000409403 CHRNA10Q9GZZ6 450 aa4.34□□□□□ -1.71
CLK1-202ENST00000409403 SPANXCQ9NY87 97 aa4.34□□□□□ -1.71
CLK1-202ENST00000409403 HILPDAQ9Y5L2 63 aa4.34□□□□□ -1.71
CLK1-202ENST00000409403 LINC00312Q9Y6C7 94 aa4.34□□□□□ -1.71
CLK1-202ENST00000409403 ABCA4P78363 2273 aa4.34□□□□□ -1.71
CLK1-202ENST00000409403 TRGV8A0A0C4DH27 118 aa4.33□□□□□ -1.72
CLK1-202ENST00000409403 C5orf63A6NC05 138 aa4.33□□□□□ -1.72
CLK1-202ENST00000409403 HIGD1CA8MV81 97 aa4.33□□□□□ -1.72
CLK1-202ENST00000409403 IGLV2-8P01709 118 aa4.33□□□□□ -1.72
CLK1-202ENST00000409403 COX6B1P14854 86 aa4.33□□□□□ -1.72
CLK1-202ENST00000409403 VDAC2P45880 294 aaPredicted RBP4.33□□□□□ -1.72
CLK1-202ENST00000409403 ERVK-16P61578 105 aa4.33□□□□□ -1.72
CLK1-202ENST00000409403 RPL30P62888 115 aaKnown RBP4.33□□□□□ -1.72
CLK1-202ENST00000409403 RPL32P62910 135 aaKnown RBP4.33□□□□□ -1.72
CLK1-202ENST00000409403 RSPO1Q2MKA7 263 aaPredicted RBP4.33□□□□□ -1.72
CLK1-202ENST00000409403 DEFB110Q30KQ9 67 aa4.33□□□□□ -1.72
CLK1-202ENST00000409403 Q6P435 159 aa4.33□□□□□ -1.72
CLK1-202ENST00000409403 RBPMS2Q6ZRY4 209 aaKnown RBP4.33□□□□□ -1.72
CLK1-202ENST00000409403 Q6ZUT4 128 aa4.33□□□□□ -1.72
CLK1-202ENST00000409403 Q8IYB0 196 aa4.33□□□□□ -1.72
CLK1-202ENST00000409403 IL1F10Q8WWZ1 152 aa4.33□□□□□ -1.72
CLK1-202ENST00000409403 SNRNP40Q96DI7 357 aaKnown RBP4.33□□□□□ -1.72
CLK1-202ENST00000409403 HSD17B10Q99714 261 aaKnown RBP4.33□□□□□ -1.72
CLK1-202ENST00000409403 RPP21Q9H633 154 aaKnown RBP4.33□□□□□ -1.72
CLK1-202ENST00000409403 ZNF492Q9P255 531 aa4.33□□□□□ -1.72
CLK1-202ENST00000409403 EPPK1P58107 5090 aaKnown RBP4.33□□□□□ -1.72
CLK1-202ENST00000409403 ZGRF1Q86YA3 2104 aa4.33□□□□□ -1.72
CLK1-202ENST00000409403 A0A1B0GWB2 263 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 CNIH1O95406 144 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 DEFA4P12838 97 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 SRYQ05066 204 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 WFDC2Q14508 124 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 ETDBQ3ZM63 59 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.32□□□□□ -1.72
CLK1-202ENST00000409403 RNF138Q8WVD3 245 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 ZDHHC19Q8WVZ1 309 aaPredicted RBP4.32□□□□□ -1.72
CLK1-202ENST00000409403 CACNG8Q8WXS5 425 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 HINT2Q9BX68 163 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 SPANXDQ9BXN6 97 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 TMEM126AQ9H061 195 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 RAB1BQ9H0U4 201 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 ENY2Q9NPA8 101 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 ZNF355PQ9NSJ1 428 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 OCIAD1Q9NX40 245 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 KLRF1Q9NZS2 232 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 TP73-AS1Q9UF72 201 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 UFC1Q9Y3C8 167 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 IGLV5-37A0A075B6J1 123 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 CENPVL3A0A0U1RRI6 287 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 PEX7O00628 323 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 DUX1O43812 170 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 C8orf88P0DMB2 117 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 KIR2DS2P43631 304 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 ZNF816Q0VGE8 651 aaPredicted RBP4.32□□□□□ -1.72
CLK1-202ENST00000409403 GAGE2BQ13066 116 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 GAGE2EQ4V326 116 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 C5orf47Q569G3 176 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 ZNF542PQ5EBM4 170 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 GDF5OSQ5U4N7 250 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 Q6AWC8 147 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 GAGE2AQ6NT46 116 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 Q6Q795 121 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 C9orf47Q6ZRZ4 202 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 LINC00173Q6ZV60 143 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 PPDPFLQ8WWR9 84 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 ARPC1AQ92747 370 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 ZNF414Q96IQ9 312 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 NAA38Q9BRA0 125 aaKnown RBP4.32□□□□□ -1.72
CLK1-202ENST00000409403 CHAC1Q9BUX1 264 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 SLC25A2Q9BXI2 301 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 TMEM133Q9H2Q1 129 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 MAP1LC3AQ9H492 121 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 GAGE2DQ9UEU5 116 aa4.32□□□□□ -1.72
CLK1-202ENST00000409403 TCRBV4S1A1TA0A5B7 111 aa4.31□□□□□ -1.72
CLK1-202ENST00000409403 FBLL1A6NHQ2 334 aaKnown RBP4.31□□□□□ -1.72
CLK1-202ENST00000409403 GGTLC3B5MD39 225 aa4.31□□□□□ -1.72
CLK1-202ENST00000409403 IGLL5B9A064 214 aa4.31□□□□□ -1.72
CLK1-202ENST00000409403 PRSS46E5RG02 174 aa4.31□□□□□ -1.72
CLK1-202ENST00000409403 LINC01619G3V211 115 aa4.31□□□□□ -1.72
CLK1-202ENST00000409403 PRKNO60260 465 aaPredicted RBP4.31□□□□□ -1.72
CLK1-202ENST00000409403 P01737 135 aa4.31□□□□□ -1.72
CLK1-202ENST00000409403 IGKV2-30P06310 120 aa4.31□□□□□ -1.72
CLK1-202ENST00000409403 ASIPP42127 132 aa4.31□□□□□ -1.72
CLK1-202ENST00000409403 RIGQ13278 110 aa4.31□□□□□ -1.72
CLK1-202ENST00000409403 ZNF146Q15072 292 aa4.31□□□□□ -1.72
CLK1-202ENST00000409403 SPATA31B1PQ5VZV4 182 aa4.31□□□□□ -1.72
CLK1-202ENST00000409403 TRAT1Q6PIZ9 186 aa4.31□□□□□ -1.72
CLK1-202ENST00000409403 ZNF497Q6ZNH5 498 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms