RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 ZNF705FA8MVS1 300 aaPredicted RBP21.61■■□□□ 1.05
USP42-202ENST00000404008 FGF8P55075 233 aaPredicted RBP21.61■■□□□ 1.05
USP42-202ENST00000404008 RANP62826 216 aaKnown RBP21.61■■□□□ 1.05
USP42-202ENST00000404008 EBLN2Q6P2I7 272 aa21.61■■□□□ 1.05
USP42-202ENST00000404008 MRPL53Q96EL3 112 aaKnown RBP21.61■■□□□ 1.05
USP42-202ENST00000404008 TMEM167BQ9NRX6 74 aa21.61■■□□□ 1.05
USP42-202ENST00000404008 PRELID1Q9Y255 219 aa21.61■■□□□ 1.05
USP42-202ENST00000404008 ICAM4Q14773 271 aa21.6■■□□□ 1.05
USP42-202ENST00000404008 MBD3L1Q8WWY6 194 aa21.6■■□□□ 1.05
USP42-202ENST00000404008 Q9H3A6 140 aa21.6■■□□□ 1.05
USP42-202ENST00000404008 M0R3E3 92 aa21.59■■□□□ 1.05
USP42-202ENST00000404008 HAGHQ16775 308 aa21.59■■□□□ 1.05
USP42-202ENST00000404008 SBSPONQ8IVN8 264 aa21.59■■□□□ 1.05
USP42-202ENST00000404008 IQCF2Q8IXL9 164 aa21.59■■□□□ 1.05
USP42-202ENST00000404008 PRB4P10163 310 aaPredicted RBP21.58■■□□□ 1.04
USP42-202ENST00000404008 FAM74A1Q5RGS3 127 aa21.58■■□□□ 1.04
USP42-202ENST00000404008 SFT2D1Q8WV19 159 aa21.58■■□□□ 1.04
USP42-202ENST00000404008 TMPRSS5Q9H3S3 457 aa21.58■■□□□ 1.04
USP42-202ENST00000404008 KIR2DL5BA0A0G2JN68 375 aa21.57■■□□□ 1.04
USP42-202ENST00000404008 KIR2DL5BA0A0G2JPC4 375 aa21.57■■□□□ 1.04
USP42-202ENST00000404008 PRAC2D3DTV9 90 aa21.57■■□□□ 1.04
USP42-202ENST00000404008 APOC4P55056 127 aa21.57■■□□□ 1.04
USP42-202ENST00000404008 ALKAL2Q6UX46 152 aa21.57■■□□□ 1.04
USP42-202ENST00000404008 KIR2DL5AQ8N109 375 aa21.57■■□□□ 1.04
USP42-202ENST00000404008 OR8A1Q8NGG7 326 aa21.57■■□□□ 1.04
USP42-202ENST00000404008 KIR2DL5BQ8NHK3 375 aa21.57■■□□□ 1.04
USP42-202ENST00000404008 H2AFB1P0C5Y9 115 aa21.56■■□□□ 1.04
USP42-202ENST00000404008 ZNF705DP0CH99 300 aaPredicted RBP21.56■■□□□ 1.04
USP42-202ENST00000404008 ZNF705BP0CI00 300 aaPredicted RBP21.56■■□□□ 1.04
USP42-202ENST00000404008 CLUHP3Q96NS8 147 aa21.56■■□□□ 1.04
USP42-202ENST00000404008 ASCL2Q99929 193 aa21.56■■□□□ 1.04
USP42-202ENST00000404008 OTORQ9NRC9 128 aa21.56■■□□□ 1.04
USP42-202ENST00000404008 DNAH9Q9NYC9 4486 aa21.55■■□□□ 1.04
USP42-202ENST00000404008 OR4B1Q8NGF8 309 aa21.55■■□□□ 1.04
USP42-202ENST00000404008 NBEAL2Q6ZNJ1 2754 aa21.55■■□□□ 1.04
USP42-202ENST00000404008 A8MTW9 85 aa21.54■■□□□ 1.04
USP42-202ENST00000404008 DUSP14O95147 198 aaKnown RBP21.54■■□□□ 1.04
USP42-202ENST00000404008 IGKV3-20P01619 116 aa21.54■■□□□ 1.04
USP42-202ENST00000404008 CNN1P51911 297 aaKnown RBP21.54■■□□□ 1.04
USP42-202ENST00000404008 CSTL1Q9H114 145 aa21.54■■□□□ 1.04
USP42-202ENST00000404008 HIST1H1AQ02539 215 aaPredicted RBP21.53■■□□□ 1.04
USP42-202ENST00000404008 MORN3Q6PF18 240 aaPredicted RBP21.52■■□□□ 1.04
USP42-202ENST00000404008 PGPA6NDG6 321 aa21.51■■□□□ 1.03
USP42-202ENST00000404008 UBE2CO00762 179 aa21.51■■□□□ 1.03
USP42-202ENST00000404008 OR10J6PQ8NGY7 276 aa21.51■■□□□ 1.03
USP42-202ENST00000404008 A0A1B0GV50 99 aa21.5■■□□□ 1.03
USP42-202ENST00000404008 A0A1W2PRE2 83 aa21.5■■□□□ 1.03
USP42-202ENST00000404008 TM2D3Q9BRN9 247 aa21.5■■□□□ 1.03
USP42-202ENST00000404008 TRAV1-1A0A0B4J248 108 aa21.49■■□□□ 1.03
USP42-202ENST00000404008 ZNF705EA8MWA4 302 aaPredicted RBP21.49■■□□□ 1.03
USP42-202ENST00000404008 CA1P00915 261 aaPredicted RBP21.49■■□□□ 1.03
USP42-202ENST00000404008 GIG44P09565 113 aaPredicted RBP21.49■■□□□ 1.03
USP42-202ENST00000404008 CSN1S1P47710 185 aa21.49■■□□□ 1.03
USP42-202ENST00000404008 NUTF2P61970 127 aaKnown RBP21.49■■□□□ 1.03
USP42-202ENST00000404008 AMTNQ6UX39 209 aa21.49■■□□□ 1.03
USP42-202ENST00000404008 RXFP4Q8TDU9 374 aa21.49■■□□□ 1.03
USP42-202ENST00000404008 YTHDF2Q9Y5A9 579 aaKnown RBP21.49■■□□□ 1.03
USP42-202ENST00000404008 GGTLC3B5MD39 225 aa21.48■■□□□ 1.03
USP42-202ENST00000404008 NPIPB6E9PJ23 425 aa21.48■■□□□ 1.03
USP42-202ENST00000404008 UBE2G2P60604 165 aa21.48■■□□□ 1.03
USP42-202ENST00000404008 CMTM2Q8TAZ6 248 aa21.48■■□□□ 1.03
USP42-202ENST00000404008 SLC35B3Q9H1N7 401 aa21.48■■□□□ 1.03
USP42-202ENST00000404008 TGP01266 2768 aa21.47■■□□□ 1.03
USP42-202ENST00000404008 IGKV2-40A0A087WW87 121 aaPredicted RBP21.47■■□□□ 1.03
USP42-202ENST00000404008 FAM74A7A6NL05 159 aa21.47■■□□□ 1.03
USP42-202ENST00000404008 IGKV2D-40P01614 121 aaPredicted RBP21.47■■□□□ 1.03
USP42-202ENST00000404008 NHLRC4P0CG21 123 aaPredicted RBP21.47■■□□□ 1.03
USP42-202ENST00000404008 Q6ZWC4 215 aa21.47■■□□□ 1.03
USP42-202ENST00000404008 ARL6IP6Q8N6S5 226 aa21.47■■□□□ 1.03
USP42-202ENST00000404008 DIRC3C9JPN6 131 aa21.46■■□□□ 1.03
USP42-202ENST00000404008 SUMO1P63165 101 aaKnown RBP21.46■■□□□ 1.03
USP42-202ENST00000404008 ARL2-SNX15V9GYD0 113 aa21.46■■□□□ 1.03
USP42-202ENST00000404008 TEX46H3BTG2 121 aa21.45■■□□□ 1.02
USP42-202ENST00000404008 HBE1P02100 147 aa21.45■■□□□ 1.02
USP42-202ENST00000404008 SLC25A5P05141 298 aaKnown RBP21.45■■□□□ 1.02
USP42-202ENST00000404008 DEFB135Q30KP9 77 aa21.45■■□□□ 1.02
USP42-202ENST00000404008 TEX261Q6UWH6 196 aa21.45■■□□□ 1.02
USP42-202ENST00000404008 C9orf47Q6ZRZ4 202 aa21.45■■□□□ 1.02
USP42-202ENST00000404008 C5orf17Q8NAS9 161 aa21.45■■□□□ 1.02
USP42-202ENST00000404008 SPATA25Q9BR10 227 aa21.45■■□□□ 1.02
USP42-202ENST00000404008 TENM3Q9P273 2699 aa21.44■■□□□ 1.02
USP42-202ENST00000404008 RBAKDNA6NC62 111 aa21.44■■□□□ 1.02
USP42-202ENST00000404008 FXYD7P58549 80 aa21.44■■□□□ 1.02
USP42-202ENST00000404008 CCL20P78556 96 aa21.44■■□□□ 1.02
USP42-202ENST00000404008 ERCC8Q13216 396 aa21.44■■□□□ 1.02
USP42-202ENST00000404008 VGLL1Q99990 258 aa21.44■■□□□ 1.02
USP42-202ENST00000404008 NKX6-2Q9C056 277 aaPredicted RBP21.44■■□□□ 1.02
USP42-202ENST00000404008 PPT1P50897 306 aa21.43■■□□□ 1.02
USP42-202ENST00000404008 GNG5P63218 68 aa21.43■■□□□ 1.02
USP42-202ENST00000404008 C1QTNF4Q9BXJ3 329 aa21.43■■□□□ 1.02
USP42-202ENST00000404008 AGPAT4-IT1Q9H0P7 198 aa21.43■■□□□ 1.02
USP42-202ENST00000404008 ZMAT4Q9H898 229 aa21.43■■□□□ 1.02
USP42-202ENST00000404008 RETNQ9HD89 108 aa21.43■■□□□ 1.02
USP42-202ENST00000404008 RPH3ALQ9UNE2 315 aa21.43■■□□□ 1.02
USP42-202ENST00000404008 HUWE1Q7Z6Z7 4374 aaKnown RBP21.43■■□□□ 1.02
USP42-202ENST00000404008 CT45A10P0DMU9 189 aa21.42■■□□□ 1.02
USP42-202ENST00000404008 LINC00477Q96M19 166 aa21.42■■□□□ 1.02
USP42-202ENST00000404008 PPP1R14DQ9NXH3 145 aa21.42■■□□□ 1.02
USP42-202ENST00000404008 XCL2Q9UBD3 114 aa21.42■■□□□ 1.02
USP42-202ENST00000404008 PAGE4O60829 102 aa21.41■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms