RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 C8orf49Q96NF6 230 aa14.72□□□□□ -0.05
USP48-204ENST00000400301 DLEU1O43261 78 aa14.71□□□□□ -0.05
USP48-204ENST00000400301 TEX43Q6ZNM6 134 aa14.71□□□□□ -0.05
USP48-204ENST00000400301 IGF2BP2-AS1Q96M15 143 aa14.71□□□□□ -0.05
USP48-204ENST00000400301 MOB4Q9Y3A3 225 aa14.71□□□□□ -0.05
USP48-204ENST00000400301 Q8NA96 180 aa14.71□□□□□ -0.06
USP48-204ENST00000400301 PRUNE2Q8WUY3 3088 aa14.71□□□□□ -0.06
USP48-204ENST00000400301 TMEM213A2RRL7 107 aa14.7□□□□□ -0.06
USP48-204ENST00000400301 ATP5LO75964 103 aa14.7□□□□□ -0.06
USP48-204ENST00000400301 FAM74A4Q5TZK3 123 aa14.7□□□□□ -0.06
USP48-204ENST00000400301 SMKR1H3BMG3 65 aa14.7□□□□□ -0.06
USP48-204ENST00000400301 IGLC2P0DOY2 106 aa14.7□□□□□ -0.06
USP48-204ENST00000400301 IGLC3P0DOY3 106 aa14.7□□□□□ -0.06
USP48-204ENST00000400301 ZC2HC1AQ96GY0 325 aa14.7□□□□□ -0.06
USP48-204ENST00000400301 IGKV1-17P01599 117 aa14.7□□□□□ -0.06
USP48-204ENST00000400301 NXT2Q9NPJ8 142 aaKnown RBP14.7□□□□□ -0.06
USP48-204ENST00000400301 K7ERU9 68 aa14.7□□□□□ -0.06
USP48-204ENST00000400301 ATP6V0E1O15342 81 aa14.7□□□□□ -0.06
USP48-204ENST00000400301 IGLV1-47P01700 117 aa14.7□□□□□ -0.06
USP48-204ENST00000400301 PEF1Q9UBV8 284 aaKnown RBP14.7□□□□□ -0.06
USP48-204ENST00000400301 INS-IGF2F8WCM5 200 aa14.69□□□□□ -0.06
USP48-204ENST00000400301 NDUFS7O75251 213 aa14.69□□□□□ -0.06
USP48-204ENST00000400301 LTAP01374 205 aa14.69□□□□□ -0.06
USP48-204ENST00000400301 GNLYP22749 145 aa14.69□□□□□ -0.06
USP48-204ENST00000400301 SIGLEC15Q6ZMC9 328 aa14.69□□□□□ -0.06
USP48-204ENST00000400301 SELENOKQ9Y6D0 94 aa14.69□□□□□ -0.06
USP48-204ENST00000400301 SCGB1C2P0DMR2 95 aa14.69□□□□□ -0.06
USP48-204ENST00000400301 RNASE4P34096 147 aaKnown RBP14.69□□□□□ -0.06
USP48-204ENST00000400301 IFI27P40305 119 aaPredicted RBP14.69□□□□□ -0.06
USP48-204ENST00000400301 G3V318 75 aa14.69□□□□□ -0.06
USP48-204ENST00000400301 GP9P14770 177 aa14.69□□□□□ -0.06
USP48-204ENST00000400301 ERCC8Q13216 396 aa14.69□□□□□ -0.06
USP48-204ENST00000400301 TDRG1Q3Y452 100 aa14.69□□□□□ -0.06
USP48-204ENST00000400301 FABP2P12104 132 aa14.68□□□□□ -0.06
USP48-204ENST00000400301 COX6B1P14854 86 aa14.68□□□□□ -0.06
USP48-204ENST00000400301 UBE2E1P51965 193 aa14.68□□□□□ -0.06
USP48-204ENST00000400301 Q1RN00 199 aa14.68□□□□□ -0.06
USP48-204ENST00000400301 MPV17L2Q567V2 206 aa14.68□□□□□ -0.06
USP48-204ENST00000400301 MS4A6AQ9H2W1 248 aa14.68□□□□□ -0.06
USP48-204ENST00000400301 H3BVH4 76 aa14.68□□□□□ -0.06
USP48-204ENST00000400301 HIST1H4GQ99525 98 aa14.68□□□□□ -0.06
USP48-204ENST00000400301 MRPL52Q86TS9 123 aaKnown RBP14.67□□□□□ -0.06
USP48-204ENST00000400301 CSPG4Q6UVK1 2322 aa14.67□□□□□ -0.06
USP48-204ENST00000400301 WIPF2Q8TF74 440 aaPredicted RBP14.67□□□□□ -0.06
USP48-204ENST00000400301 KIR2DL5BA0A0G2JN68 375 aa14.67□□□□□ -0.06
USP48-204ENST00000400301 KIR2DL5BA0A0G2JPC4 375 aa14.67□□□□□ -0.06
USP48-204ENST00000400301 I3L2K1 104 aa14.67□□□□□ -0.06
USP48-204ENST00000400301 KIR2DL5AQ8N109 375 aa14.67□□□□□ -0.06
USP48-204ENST00000400301 DYNLRB2Q8TF09 96 aa14.67□□□□□ -0.06
USP48-204ENST00000400301 K7EIM0 57 aa14.66□□□□□ -0.06
USP48-204ENST00000400301 RNF182Q8N6D2 247 aa14.66□□□□□ -0.06
USP48-204ENST00000400301 SCGB3A1Q96QR1 104 aa14.66□□□□□ -0.06
USP48-204ENST00000400301 OR11H12B2RN74 326 aa14.66□□□□□ -0.06
USP48-204ENST00000400301 HAX1O00165 279 aa14.66□□□□□ -0.06
USP48-204ENST00000400301 SNRPD3P62318 126 aaKnown RBP14.66□□□□□ -0.06
USP48-204ENST00000400301 SYT8Q8NBV8 401 aa14.66□□□□□ -0.06
USP48-204ENST00000400301 OR11H1Q8NG94 326 aa14.66□□□□□ -0.06
USP48-204ENST00000400301 OR11H2Q8NH07 326 aa14.66□□□□□ -0.06
USP48-204ENST00000400301 FAM110DQ8TAY7 271 aaPredicted RBP14.66□□□□□ -0.06
USP48-204ENST00000400301 NPFFR1Q9GZQ6 430 aa14.66□□□□□ -0.06
USP48-204ENST00000400301 TRBV7-1A0A0A6YYK4 115 aa14.65□□□□□ -0.06
USP48-204ENST00000400301 SRD5A1P18405 259 aa14.65□□□□□ -0.06
USP48-204ENST00000400301 IGKV1D-37A0A075B6S9 117 aa14.65□□□□□ -0.06
USP48-204ENST00000400301 TRAV21A0A0B4J279 112 aa14.65□□□□□ -0.06
USP48-204ENST00000400301 IGHV1-24A0A0C4DH33 117 aa14.65□□□□□ -0.06
USP48-204ENST00000400301 H3BUX3 64 aa14.65□□□□□ -0.06
USP48-204ENST00000400301 PRR25Q96S07 402 aa14.65□□□□□ -0.06
USP48-204ENST00000400301 DGAT2L7PQ6IED9 249 aa14.65□□□□□ -0.06
USP48-204ENST00000400301 Q8N7P7 452 aa14.65□□□□□ -0.06
USP48-204ENST00000400301 TGFAP01135 160 aa14.65□□□□□ -0.06
USP48-204ENST00000400301 IGLL1P15814 213 aa14.65□□□□□ -0.06
USP48-204ENST00000400301 OR11H6Q8NGC7 330 aa14.64□□□□□ -0.07
USP48-204ENST00000400301 KIR2DL4Q99706 377 aa14.64□□□□□ -0.07
USP48-204ENST00000400301 ADAMTS20P59510 1910 aa14.64□□□□□ -0.07
USP48-204ENST00000400301 A0A087X0K7 114 aa14.64□□□□□ -0.07
USP48-204ENST00000400301 TEX22C9J3V5 150 aa14.64□□□□□ -0.07
USP48-204ENST00000400301 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP14.64□□□□□ -0.07
USP48-204ENST00000400301 ZNF56Q15929 161 aa14.64□□□□□ -0.07
USP48-204ENST00000400301 FAM104BQ5XKR9 115 aa14.63□□□□□ -0.07
USP48-204ENST00000400301 RUSC1-AS1Q66K80 236 aa14.63□□□□□ -0.07
USP48-204ENST00000400301 ANKRD11Q6UB99 2663 aaPredicted RBP14.63□□□□□ -0.07
USP48-204ENST00000400301 IGHV2-70DA0A0C4DH43 119 aa14.63□□□□□ -0.07
USP48-204ENST00000400301 MAJINQ3KP22 176 aa14.63□□□□□ -0.07
USP48-204ENST00000400301 MRPS16Q9Y3D3 137 aaKnown RBP14.63□□□□□ -0.07
USP48-204ENST00000400301 PLP1P60201 277 aa14.62□□□□□ -0.07
USP48-204ENST00000400301 PIEZO1Q92508 2521 aa14.62□□□□□ -0.07
USP48-204ENST00000400301 TRIOO75962 3097 aa14.62□□□□□ -0.07
USP48-204ENST00000400301 NDUFA3O95167 84 aa14.62□□□□□ -0.07
USP48-204ENST00000400301 CRYGCP07315 174 aa14.62□□□□□ -0.07
USP48-204ENST00000400301 C9orf139Q6ZV77 190 aa14.62□□□□□ -0.07
USP48-204ENST00000400301 OR1N2Q8NGR9 330 aa14.62□□□□□ -0.07
USP48-204ENST00000400301 TANC2Q9HCD6 1990 aa14.61□□□□□ -0.07
USP48-204ENST00000400301 IGLV2-8P01709 118 aa14.61□□□□□ -0.07
USP48-204ENST00000400301 SMIM13P0DJ93 91 aa14.61□□□□□ -0.07
USP48-204ENST00000400301 WFDC12Q8WWY7 111 aa14.61□□□□□ -0.07
USP48-204ENST00000400301 VGLL1Q99990 258 aa14.61□□□□□ -0.07
USP48-204ENST00000400301 OVOL1O14753 267 aa14.61□□□□□ -0.07
USP48-204ENST00000400301 PSMG4Q5JS54 123 aa14.61□□□□□ -0.07
USP48-204ENST00000400301 DPM2O94777 84 aa14.6□□□□□ -0.07
USP48-204ENST00000400301 HLA-DMBP28068 263 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 69.2 ms