RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 HIST1H2BMQ99879 126 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 REG4Q9BYZ8 158 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 NAA60Q9H7X0 242 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 ZNF222Q9UK12 451 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 SCN4AP35499 1836 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 TRIOBPQ9H2D6 2365 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 ZNFX1Q9P2E3 1918 aaKnown RBP2.74□□□□□ -1.97
HMGB1-204ENST00000399489 FER1L6Q2WGJ9 1857 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 PSME4Q14997 1843 aa2.74□□□□□ -1.97
HMGB1-204ENST00000399489 TRGV10A0A0A0MS01 117 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 IGHV1-3A0A0C4DH29 117 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 OR51F1A6NGY5 319 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 ZNF860A6NHJ4 632 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 GEMIN2O14893 280 aaKnown RBP2.73□□□□□ -1.97
HMGB1-204ENST00000399489 MRPS14O60783 128 aaKnown RBP2.73□□□□□ -1.97
HMGB1-204ENST00000399489 IGKV1-5P01602 117 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 TCRAP04437 139 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 PRM2P04554 102 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 IGLC1P0CG04 106 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 GNGT1P63211 74 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 CCL20P78556 96 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 DEFA5Q01523 94 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 ZNF90Q03938 601 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 RNF182Q8N6D2 247 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 ZFAND2AQ8N6M9 145 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 CD177Q8N6Q3 437 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 OR5D16Q8NGK9 328 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 ZNRD1Q9P1U0 126 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 COL4A5P29400 1685 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 CASP8AP2Q9UKL3 1982 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 NUP210Q8TEM1 1887 aaPredicted RBP2.73□□□□□ -1.97
HMGB1-204ENST00000399489 A0A0J9YW62 118 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 A0A1W2PP18 115 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 K7ERS5 55 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 PDCD5O14737 125 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 S100A4P26447 101 aaKnown RBP2.73□□□□□ -1.97
HMGB1-204ENST00000399489 AQP4P55087 323 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 TSPEAR-AS2P59090 65 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 GNB2P62879 340 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 RPL30P62888 115 aaKnown RBP2.73□□□□□ -1.97
HMGB1-204ENST00000399489 HBBP68871 147 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 C15orf32Q32M92 178 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 C9orf153Q5TBE3 101 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 Q6AWC8 147 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 LINC00311Q8N616 119 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 BPIFB6Q8NFQ5 453 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 OR4B1Q8NGF8 309 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 OR5AK2Q8NH90 309 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 LINC01560Q8TB33 94 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 HYLS1Q96M11 299 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 ZNF835Q9Y2P0 537 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 CHCHD2Q9Y6H1 151 aaPredicted RBP2.73□□□□□ -1.97
HMGB1-204ENST00000399489 DICER1Q9UPY3 1922 aaKnown RBP2.73□□□□□ -1.97
HMGB1-204ENST00000399489 ANKRD26Q9UPS8 1709 aa2.73□□□□□ -1.97
HMGB1-204ENST00000399489 TMEM256-PLSCR3K7ERE1 68 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 M0R129 80 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 UQCRQO14949 82 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 EDF1O60869 148 aaKnown RBP2.72□□□□□ -1.97
HMGB1-204ENST00000399489 NDUFB2O95178 105 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 IGHV1-46P01743 117 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 CXCL1P09341 107 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 PTHLHP12272 177 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 HLA-DRB4P13762 266 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 SRP14P37108 136 aaKnown RBP2.72□□□□□ -1.97
HMGB1-204ENST00000399489 UBE2BP63146 152 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 MRPL51Q4U2R6 128 aaKnown RBP2.72□□□□□ -1.97
HMGB1-204ENST00000399489 AADACL3Q5VUY0 350 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 SPINK14Q6IE38 97 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 WFDC11Q8NEX6 87 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 OR10P1Q8NGE3 313 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 OR4X2Q8NGF9 303 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 STAG3L4Q8TBR4 150 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 RAB37Q96AX2 223 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 SEC11CQ9BY50 192 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 SMCO4Q9NRQ5 59 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 IL36BQ9NZH7 164 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 TMEM14AQ9Y6G1 99 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 HLA-DRB4X5D2U9 266 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 CDK5RAP2Q96SN8 1893 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 TJP1Q07157 1748 aa2.72□□□□□ -1.97
HMGB1-204ENST00000399489 TRAV12-2A0A075B6T6 113 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 TRBV27A0A0K0K1C4 114 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 IGHV3-30-3P0DP02 117 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 CSN1S1P47710 185 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 ARPP19P56211 112 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 DSCR10P59022 87 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 IGLV3-21P80748 117 aaPredicted RBP2.71□□□□□ -1.98
HMGB1-204ENST00000399489 AKR1C1Q04828 323 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 Q56UQ5 140 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 C16orf47Q6ZP98 133 aaPredicted RBP2.71□□□□□ -1.98
HMGB1-204ENST00000399489 Q6ZUT4 128 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 SPATA12Q7Z6I5 190 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 ATOH7Q8N100 152 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 LINC00526Q96FQ7 95 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 MCEEQ96PE7 176 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 GABARAPL1Q9H0R8 117 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 PRO3102Q9H379 93 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 LINC00588Q9Y4M8 146 aa2.71□□□□□ -1.98
HMGB1-204ENST00000399489 AFDNP55196 1824 aaKnown RBP2.71□□□□□ -1.98
HMGB1-204ENST00000399489 PRUNE2Q8WUY3 3088 aa2.71□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms