RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 HERC1Q15751 4861 aa11.45□□□□□ -0.58
CUX2-202ENST00000397643 ZNF705FA8MVS1 300 aaPredicted RBP11.45□□□□□ -0.58
CUX2-202ENST00000397643 BOLA2-SMG1P6H3BVE0 249 aa11.45□□□□□ -0.58
CUX2-202ENST00000397643 MBP02144 154 aa11.45□□□□□ -0.58
CUX2-202ENST00000397643 ZNF705DP0CH99 300 aaPredicted RBP11.45□□□□□ -0.58
CUX2-202ENST00000397643 ZNF705BP0CI00 300 aaPredicted RBP11.45□□□□□ -0.58
CUX2-202ENST00000397643 SOHLH1Q5JUK2 328 aa11.45□□□□□ -0.58
CUX2-202ENST00000397643 C1orf194Q5T5A4 169 aa11.45□□□□□ -0.58
CUX2-202ENST00000397643 LINC00305Q7Z4B0 112 aa11.45□□□□□ -0.58
CUX2-202ENST00000397643 BAP18Q8IXM2 172 aa11.45□□□□□ -0.58
CUX2-202ENST00000397643 STOML3Q8TAV4 291 aa11.45□□□□□ -0.58
CUX2-202ENST00000397643 TMEM37Q8WXS4 190 aa11.45□□□□□ -0.58
CUX2-202ENST00000397643 FAM210BQ96KR6 192 aa11.45□□□□□ -0.58
CUX2-202ENST00000397643 NEU1Q99519 415 aa11.45□□□□□ -0.58
CUX2-202ENST00000397643 SHANK2-AS3Q9BTD1 123 aa11.45□□□□□ -0.58
CUX2-202ENST00000397643 C1QTNF4Q9BXJ3 329 aa11.45□□□□□ -0.58
CUX2-202ENST00000397643 SLC25A39Q9BZJ4 359 aaPredicted RBP11.45□□□□□ -0.58
CUX2-202ENST00000397643 SH3BGRL3Q9H299 93 aa11.45□□□□□ -0.58
CUX2-202ENST00000397643 SLC25A32Q9H2D1 315 aa11.45□□□□□ -0.58
CUX2-202ENST00000397643 HELTA6NFD8 242 aa11.44□□□□□ -0.58
CUX2-202ENST00000397643 ZNF98A6NK75 572 aa11.44□□□□□ -0.58
CUX2-202ENST00000397643 H3BMM0 161 aa11.44□□□□□ -0.58
CUX2-202ENST00000397643 H3BRN7 92 aa11.44□□□□□ -0.58
CUX2-202ENST00000397643 BUB3O43684 328 aa11.44□□□□□ -0.58
CUX2-202ENST00000397643 SPART-AS1P0CW21 52 aa11.44□□□□□ -0.58
CUX2-202ENST00000397643 M6PRP20645 277 aa11.44□□□□□ -0.58
CUX2-202ENST00000397643 RNF212Q495C1 297 aa11.44□□□□□ -0.58
CUX2-202ENST00000397643 GCSAMLQ5JQS6 135 aa11.44□□□□□ -0.58
CUX2-202ENST00000397643 C1orf134Q5TEV5 83 aa11.44□□□□□ -0.58
CUX2-202ENST00000397643 C16orf54Q6UWD8 224 aa11.44□□□□□ -0.58
CUX2-202ENST00000397643 UHRF2Q96PU4 802 aa11.44□□□□□ -0.58
CUX2-202ENST00000397643 RFNGQ9Y644 331 aa11.44□□□□□ -0.58
CUX2-202ENST00000397643 SEC11BP0C7V7 166 aa11.43□□□□□ -0.58
CUX2-202ENST00000397643 EIF5AL1Q6IS14 154 aaKnown RBP11.43□□□□□ -0.58
CUX2-202ENST00000397643 OR8I2Q8N0Y5 310 aa11.43□□□□□ -0.58
CUX2-202ENST00000397643 MAPKAPK5-AS1Q8N8E1 139 aa11.43□□□□□ -0.58
CUX2-202ENST00000397643 SLC25A22Q9H936 323 aa11.43□□□□□ -0.58
CUX2-202ENST00000397643 NUTF2P61970 127 aaKnown RBP11.42□□□□□ -0.58
CUX2-202ENST00000397643 RHOBP62745 196 aa11.42□□□□□ -0.58
CUX2-202ENST00000397643 TNP2Q05952 138 aa11.42□□□□□ -0.58
CUX2-202ENST00000397643 AKR1C8PQ5T2L2 129 aa11.42□□□□□ -0.58
CUX2-202ENST00000397643 FAM78BQ5VT40 261 aa11.42□□□□□ -0.58
CUX2-202ENST00000397643 OR10G4Q8NGN3 311 aa11.42□□□□□ -0.58
CUX2-202ENST00000397643 OR10G9Q8NGN4 311 aa11.42□□□□□ -0.58
CUX2-202ENST00000397643 OR10G7Q8NGN6 311 aa11.42□□□□□ -0.58
CUX2-202ENST00000397643 GPR82Q96P67 336 aa11.42□□□□□ -0.58
CUX2-202ENST00000397643 MRPL32Q9BYC8 188 aaKnown RBP11.42□□□□□ -0.58
CUX2-202ENST00000397643 DKK2Q9UBU2 259 aa11.42□□□□□ -0.58
CUX2-202ENST00000397643 A0A1W2PPV4 95 aa11.41□□□□□ -0.58
CUX2-202ENST00000397643 TMEM189A5PLL7 270 aa11.41□□□□□ -0.58
CUX2-202ENST00000397643 C16orf90A8MZG2 172 aa11.41□□□□□ -0.58
CUX2-202ENST00000397643 HLA-DRB4P13762 266 aa11.41□□□□□ -0.58
CUX2-202ENST00000397643 EMP1P54849 157 aa11.41□□□□□ -0.58
CUX2-202ENST00000397643 RAB2AP61019 212 aa11.41□□□□□ -0.58
CUX2-202ENST00000397643 SEPSECSQ9HD40 501 aaKnown RBP11.41□□□□□ -0.58
CUX2-202ENST00000397643 FUT9Q9Y231 359 aa11.41□□□□□ -0.58
CUX2-202ENST00000397643 BOLA1Q9Y3E2 137 aa11.41□□□□□ -0.58
CUX2-202ENST00000397643 HLA-DRB4X5D2U9 266 aa11.41□□□□□ -0.58
CUX2-202ENST00000397643 RPL7P18124 248 aaKnown RBP11.4□□□□□ -0.58
CUX2-202ENST00000397643 GALR1P47211 349 aa11.4□□□□□ -0.58
CUX2-202ENST00000397643 GDF5OSQ5U4N7 250 aa11.4□□□□□ -0.58
CUX2-202ENST00000397643 FAM222AQ5U5X8 452 aa11.4□□□□□ -0.58
CUX2-202ENST00000397643 FAM122CQ6P4D5 195 aa11.4□□□□□ -0.58
CUX2-202ENST00000397643 SIGLEC15Q6ZMC9 328 aa11.4□□□□□ -0.58
CUX2-202ENST00000397643 NIPSNAP3BQ9BS92 247 aa11.4□□□□□ -0.58
CUX2-202ENST00000397643 ACTR3CQ9C0K3 210 aaPredicted RBP11.4□□□□□ -0.58
CUX2-202ENST00000397643 TRAV5A0A0B4J249 113 aa11.39□□□□□ -0.59
CUX2-202ENST00000397643 SMIM9A6NGZ8 99 aa11.39□□□□□ -0.59
CUX2-202ENST00000397643 UMAD1C9J7I0 102 aa11.39□□□□□ -0.59
CUX2-202ENST00000397643 TAS2R45P59539 299 aa11.39□□□□□ -0.59
CUX2-202ENST00000397643 DEFB1P60022 68 aa11.39□□□□□ -0.59
CUX2-202ENST00000397643 SNRPD3P62318 126 aaKnown RBP11.39□□□□□ -0.59
CUX2-202ENST00000397643 SPATA31B1PQ5VZV4 182 aa11.39□□□□□ -0.59
CUX2-202ENST00000397643 MIR17HGQ75NE6 70 aa11.39□□□□□ -0.59
CUX2-202ENST00000397643 BPIFA4PQ86YQ2 179 aa11.39□□□□□ -0.59
CUX2-202ENST00000397643 TMED6Q8WW62 240 aa11.39□□□□□ -0.59
CUX2-202ENST00000397643 NRN1Q9NPD7 142 aa11.39□□□□□ -0.59
CUX2-202ENST00000397643 RPRMQ9NS64 109 aa11.39□□□□□ -0.59
CUX2-202ENST00000397643 CDC34P49427 236 aaPredicted RBP11.38□□□□□ -0.59
CUX2-202ENST00000397643 MORN5Q5VZ52 161 aa11.38□□□□□ -0.59
CUX2-202ENST00000397643 TMEM88Q6PEY1 159 aa11.38□□□□□ -0.59
CUX2-202ENST00000397643 Q8N1X5 172 aa11.38□□□□□ -0.59
CUX2-202ENST00000397643 TEX48A0A1B0GUV7 120 aa11.37□□□□□ -0.59
CUX2-202ENST00000397643 FXYD7P58549 80 aa11.37□□□□□ -0.59
CUX2-202ENST00000397643 PHYHIPLQ96FC7 376 aa11.37□□□□□ -0.59
CUX2-202ENST00000397643 TMEM14CQ9P0S9 112 aa11.37□□□□□ -0.59
CUX2-202ENST00000397643 IGHV3OR16-12A0A075B7B8 117 aa11.36□□□□□ -0.59
CUX2-202ENST00000397643 HTN3P15516 51 aa11.36□□□□□ -0.59
CUX2-202ENST00000397643 MEOX2P50222 304 aa11.36□□□□□ -0.59
CUX2-202ENST00000397643 RAB5CP51148 216 aa11.36□□□□□ -0.59
CUX2-202ENST00000397643 KHDC3LQ587J8 217 aa11.36□□□□□ -0.59
CUX2-202ENST00000397643 SAMD13Q5VXD3 122 aa11.36□□□□□ -0.59
CUX2-202ENST00000397643 DPPA3Q6W0C5 159 aa11.36□□□□□ -0.59
CUX2-202ENST00000397643 RAB24Q969Q5 203 aa11.36□□□□□ -0.59
CUX2-202ENST00000397643 SLC25A2Q9BXI2 301 aa11.36□□□□□ -0.59
CUX2-202ENST00000397643 CTXND1A0A1B0GTU2 59 aa11.35□□□□□ -0.59
CUX2-202ENST00000397643 OR7C2O60412 319 aa11.35□□□□□ -0.59
CUX2-202ENST00000397643 IGKV3-20P01619 116 aa11.35□□□□□ -0.59
CUX2-202ENST00000397643 FAM3BP58499 235 aaPredicted RBP11.35□□□□□ -0.59
CUX2-202ENST00000397643 FAM167A-AS1Q96KT0 104 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 219.4 ms