RNA–Protein interactions for RNA: ENST00000397545.8

CCDC40-204, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS P3 TSL 5 BASIC

Gene CCDC40, Length 4,294 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-204ENST00000397545 TMEM213A2RRL7 107 aa8.69□□□□□ -1.02
CCDC40-204ENST00000397545 CFHR2P36980 270 aa8.69□□□□□ -1.02
CCDC40-204ENST00000397545 SEC11AP67812 179 aa8.69□□□□□ -1.02
CCDC40-204ENST00000397545 HSD52Q0P140 79 aa8.69□□□□□ -1.02
CCDC40-204ENST00000397545 PAPPA-AS1Q5QFB9 102 aa8.69□□□□□ -1.02
CCDC40-204ENST00000397545 LYPD6BQ8NI32 183 aa8.69□□□□□ -1.02
CCDC40-204ENST00000397545 ITLN2Q8WWU7 325 aaPredicted RBP8.69□□□□□ -1.02
CCDC40-204ENST00000397545 SLC50A1Q9BRV3 221 aa8.69□□□□□ -1.02
CCDC40-204ENST00000397545 TMEM14BQ9NUH8 114 aa8.69□□□□□ -1.02
CCDC40-204ENST00000397545 TOMM7Q9P0U1 55 aa8.69□□□□□ -1.02
CCDC40-204ENST00000397545 DOPEY1Q5JWR5 2465 aa8.69□□□□□ -1.02
CCDC40-204ENST00000397545 SH2D1AO60880 128 aa8.68□□□□□ -1.02
CCDC40-204ENST00000397545 Q6ZVH6 145 aa8.68□□□□□ -1.02
CCDC40-204ENST00000397545 OR13C6PQ8NH95 151 aa8.68□□□□□ -1.02
CCDC40-204ENST00000397545 MS4A6AQ9H2W1 248 aa8.68□□□□□ -1.02
CCDC40-204ENST00000397545 CYSLTR1Q9Y271 337 aa8.68□□□□□ -1.02
CCDC40-204ENST00000397545 COL8A2P25067 703 aa8.68□□□□□ -1.02
CCDC40-204ENST00000397545 SAMD13Q5VXD3 122 aa8.68□□□□□ -1.02
CCDC40-204ENST00000397545 V9GYV3 84 aa8.68□□□□□ -1.02
CCDC40-204ENST00000397545 IGLC2P0DOY2 106 aa8.68□□□□□ -1.02
CCDC40-204ENST00000397545 IGLC3P0DOY3 106 aa8.68□□□□□ -1.02
CCDC40-204ENST00000397545 POLQO75417 2590 aa8.68□□□□□ -1.02
CCDC40-204ENST00000397545 DIAPH2-AS1Q14236 149 aa8.68□□□□□ -1.02
CCDC40-204ENST00000397545 LCNL1Q6ZST4 164 aa8.68□□□□□ -1.02
CCDC40-204ENST00000397545 RCHY1Q96PM5 261 aa8.68□□□□□ -1.02
CCDC40-204ENST00000397545 TPSG1Q9NRR2 321 aa8.68□□□□□ -1.02
CCDC40-204ENST00000397545 TRAV2A0A0B4J234 112 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 SRRM4A7MD48 611 aaKnown RBP8.67□□□□□ -1.02
CCDC40-204ENST00000397545 IGHG3P01860 377 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 PLA2G5P39877 138 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 WT1-ASQ06250 92 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 C5orf64Q2M2E5 130 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 C11orf44Q8N8P7 122 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 DUX3Q96PT4 197 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 FRYQ5TBA9 3013 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 TRAV40A0A0B4J280 105 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 MBD3L4A6NDZ8 208 aaPredicted RBP8.67□□□□□ -1.02
CCDC40-204ENST00000397545 MBD3L3A6NE82 208 aaPredicted RBP8.67□□□□□ -1.02
CCDC40-204ENST00000397545 MBD3L5A6NJ08 208 aaPredicted RBP8.67□□□□□ -1.02
CCDC40-204ENST00000397545 NPFFO15130 113 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 SCGB1A1P11684 91 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 RASL11AQ6T310 242 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 MBD3L2Q8NHZ7 208 aaPredicted RBP8.67□□□□□ -1.02
CCDC40-204ENST00000397545 FAM168AQ92567 244 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 VCX2Q9H322 139 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 TRAV21A0A0B4J279 112 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 A0A1B0GV72 72 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 GAGE12BA1L429 117 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 BUB1B-PAK6H3BSN5 160 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 TOMM40O96008 361 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 THBDP07204 575 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 IGLL1P15814 213 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 YPEL3P61236 119 aaPredicted RBP8.67□□□□□ -1.02
CCDC40-204ENST00000397545 PAX8Q06710 450 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 TMEM249Q2WGJ8 235 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 MAJINQ3KP22 176 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 BRD3OSQ6XYD6 125 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 TMEM158Q8WZ71 300 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 TNFRSF14Q92956 283 aa8.67□□□□□ -1.02
CCDC40-204ENST00000397545 TRAV8-2A0A0B4J237 113 aa8.66□□□□□ -1.02
CCDC40-204ENST00000397545 TRAV12-3A0A0B4J271 114 aa8.66□□□□□ -1.02
CCDC40-204ENST00000397545 ERCC8Q13216 396 aa8.66□□□□□ -1.02
CCDC40-204ENST00000397545 VMO1Q7Z5L0 202 aa8.66□□□□□ -1.02
CCDC40-204ENST00000397545 Q86TA4 180 aa8.66□□□□□ -1.02
CCDC40-204ENST00000397545 CCL19Q99731 98 aa8.66□□□□□ -1.02
CCDC40-204ENST00000397545 SPRY4Q9C004 299 aa8.66□□□□□ -1.02
CCDC40-204ENST00000397545 CHTOPQ9Y3Y2 248 aaKnown RBP8.66□□□□□ -1.02
CCDC40-204ENST00000397545 NUPR1O60356 82 aa8.66□□□□□ -1.02
CCDC40-204ENST00000397545 KIR3DS1Q14943 382 aa8.66□□□□□ -1.02
CCDC40-204ENST00000397545 PSG3Q16557 428 aa8.66□□□□□ -1.02
CCDC40-204ENST00000397545 PLA2G2CQ5R387 149 aa8.66□□□□□ -1.02
CCDC40-204ENST00000397545 C14orf178Q8N769 122 aaPredicted RBP8.66□□□□□ -1.02
CCDC40-204ENST00000397545 COX11Q9Y6N1 276 aa8.66□□□□□ -1.02
CCDC40-204ENST00000397545 MED12LQ86YW9 2145 aa8.66□□□□□ -1.02
CCDC40-204ENST00000397545 C17orf58Q2M2W7 97 aa8.66□□□□□ -1.02
CCDC40-204ENST00000397545 C15orf65H3BRN8 121 aa8.66□□□□□ -1.02
CCDC40-204ENST00000397545 HOXA3O43365 443 aaPredicted RBP8.66□□□□□ -1.02
CCDC40-204ENST00000397545 IGHV4-39P01824 125 aa8.66□□□□□ -1.02
CCDC40-204ENST00000397545 VWC2Q2TAL6 325 aa8.66□□□□□ -1.02
CCDC40-204ENST00000397545 PRR30Q53SZ7 412 aaPredicted RBP8.66□□□□□ -1.02
CCDC40-204ENST00000397545 TDRG1Q3Y452 100 aa8.65□□□□□ -1.02
CCDC40-204ENST00000397545 GTSF1LQ9H1H1 148 aa8.65□□□□□ -1.02
CCDC40-204ENST00000397545 NDUFA4L2Q9NRX3 87 aa8.65□□□□□ -1.02
CCDC40-204ENST00000397545 KLF2Q9Y5W3 355 aaPredicted RBP8.65□□□□□ -1.02
CCDC40-204ENST00000397545 DSCAML1Q8TD84 2053 aa8.65□□□□□ -1.02
CCDC40-204ENST00000397545 WISP2O76076 250 aa8.65□□□□□ -1.02
CCDC40-204ENST00000397545 ZNF688P0C7X2 276 aa8.65□□□□□ -1.02
CCDC40-204ENST00000397545 NBL1P41271 181 aa8.65□□□□□ -1.02
CCDC40-204ENST00000397545 MTURNQ8N3F0 131 aa8.65□□□□□ -1.02
CCDC40-204ENST00000397545 OR9G4Q8NGQ1 327 aa8.65□□□□□ -1.02
CCDC40-204ENST00000397545 LINC01587Q99440 93 aa8.65□□□□□ -1.02
CCDC40-204ENST00000397545 A0A1W2PRX2 142 aa8.65□□□□□ -1.03
CCDC40-204ENST00000397545 E7EQL1 145 aa8.64□□□□□ -1.03
CCDC40-204ENST00000397545 TMEM262E9PQX1 116 aa8.64□□□□□ -1.03
CCDC40-204ENST00000397545 H7C1H1 209 aa8.64□□□□□ -1.03
CCDC40-204ENST00000397545 COX6B1P14854 86 aa8.64□□□□□ -1.03
CCDC40-204ENST00000397545 LAGE3Q14657 143 aa8.64□□□□□ -1.03
CCDC40-204ENST00000397545 PRSS57Q6UWY2 283 aa8.64□□□□□ -1.03
CCDC40-204ENST00000397545 USP9YO00507 2555 aaPredicted RBP8.64□□□□□ -1.03
CCDC40-204ENST00000397545 IGHV3-73A0A0B4J1V6 119 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 94.6 ms