RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 FNDC1Q4ZHG4 1894 aaPredicted RBP11.05□□□□□ -0.64
USP49-203ENST00000394253 C22orf46C9J442 243 aa11.05□□□□□ -0.64
USP49-203ENST00000394253 PRR15LQ9BU68 103 aa11.05□□□□□ -0.64
USP49-203ENST00000394253 PCOLCEQ15113 449 aa11.04□□□□□ -0.64
USP49-203ENST00000394253 USMG5Q96IX5 58 aa11.04□□□□□ -0.64
USP49-203ENST00000394253 PIN1P1O15428 100 aa11.04□□□□□ -0.64
USP49-203ENST00000394253 DUX4L9Q6RFH8 374 aaPredicted RBP11.04□□□□□ -0.64
USP49-203ENST00000394253 RFNGQ9Y644 331 aa11.04□□□□□ -0.64
USP49-203ENST00000394253 CXCL10P02778 98 aa11.04□□□□□ -0.64
USP49-203ENST00000394253 ACANP16112 2415 aa11.04□□□□□ -0.64
USP49-203ENST00000394253 NPSP0C0P6 89 aa11.04□□□□□ -0.64
USP49-203ENST00000394253 PFN2P35080 140 aa11.04□□□□□ -0.64
USP49-203ENST00000394253 ZNF106Q9H2Y7 1883 aaKnown RBP11.04□□□□□ -0.64
USP49-203ENST00000394253 HERVK_113P63121 156 aa11.04□□□□□ -0.64
USP49-203ENST00000394253 TMEM52Q8NDY8 209 aa11.04□□□□□ -0.64
USP49-203ENST00000394253 RNASE2P10153 161 aaKnown RBP11.03□□□□□ -0.64
USP49-203ENST00000394253 RPL15P61313 204 aaKnown RBP11.03□□□□□ -0.64
USP49-203ENST00000394253 TREML4Q6UXN2 200 aa11.03□□□□□ -0.64
USP49-203ENST00000394253 TEX48A0A1B0GUV7 120 aa11.03□□□□□ -0.64
USP49-203ENST00000394253 GLRX5Q86SX6 157 aa11.03□□□□□ -0.64
USP49-203ENST00000394253 UBE2BP63146 152 aa11.03□□□□□ -0.64
USP49-203ENST00000394253 POLR3KQ9Y2Y1 108 aaPredicted RBP11.03□□□□□ -0.64
USP49-203ENST00000394253 MDS2Q8NDY4 140 aa11.03□□□□□ -0.64
USP49-203ENST00000394253 SAP30O75446 220 aa11.02□□□□□ -0.64
USP49-203ENST00000394253 REPIN1Q9BWE0 567 aaKnown RBP11.02□□□□□ -0.65
USP49-203ENST00000394253 MRPL14Q6P1L8 145 aaKnown RBP11.02□□□□□ -0.65
USP49-203ENST00000394253 F8VRH5 84 aa11.02□□□□□ -0.65
USP49-203ENST00000394253 SRXN1Q9BYN0 137 aa11.02□□□□□ -0.65
USP49-203ENST00000394253 CENPVL1A0A0U1RR11 272 aa11.02□□□□□ -0.65
USP49-203ENST00000394253 FAM223BA6NKX1 122 aa11.02□□□□□ -0.65
USP49-203ENST00000394253 K7EMI3 77 aa11.02□□□□□ -0.65
USP49-203ENST00000394253 SLC25A16P16260 332 aa11.02□□□□□ -0.65
USP49-203ENST00000394253 LTBRP36941 435 aa11.02□□□□□ -0.65
USP49-203ENST00000394253 CDKN1AP38936 164 aa11.02□□□□□ -0.65
USP49-203ENST00000394253 ZFP2Q6ZN57 461 aa11.02□□□□□ -0.65
USP49-203ENST00000394253 FAM223AQ8IWN6 122 aa11.02□□□□□ -0.65
USP49-203ENST00000394253 FXYD7P58549 80 aa11.01□□□□□ -0.65
USP49-203ENST00000394253 CGB7P0DN87 165 aa11.01□□□□□ -0.65
USP49-203ENST00000394253 TMEM92Q6UXU6 159 aa11.01□□□□□ -0.65
USP49-203ENST00000394253 FOXS1O43638 330 aa11.01□□□□□ -0.65
USP49-203ENST00000394253 BAALC-AS2P0C853 105 aa11.01□□□□□ -0.65
USP49-203ENST00000394253 NDUFA12Q9UI09 145 aa11.01□□□□□ -0.65
USP49-203ENST00000394253 NPYP01303 97 aa11.01□□□□□ -0.65
USP49-203ENST00000394253 HLA-DRB4P13762 266 aa11.01□□□□□ -0.65
USP49-203ENST00000394253 HLA-DRB4X5D2U9 266 aa11.01□□□□□ -0.65
USP49-203ENST00000394253 A0A0B4J2C4 111 aa11□□□□□ -0.65
USP49-203ENST00000394253 IGHV2-70P01814 119 aa11□□□□□ -0.65
USP49-203ENST00000394253 BMPERQ8N8U9 685 aa11□□□□□ -0.65
USP49-203ENST00000394253 C3orf36Q3SXR2 165 aa11□□□□□ -0.65
USP49-203ENST00000394253 ANXA2RQ3ZCQ2 193 aa11□□□□□ -0.65
USP49-203ENST00000394253 ZNF501Q96CX3 271 aaPredicted RBP11□□□□□ -0.65
USP49-203ENST00000394253 LINC01590Q5TEZ4 76 aa11□□□□□ -0.65
USP49-203ENST00000394253 SHANK3Q9BYB0 1731 aa11□□□□□ -0.65
USP49-203ENST00000394253 A0A087WWL8 130 aa11□□□□□ -0.65
USP49-203ENST00000394253 CXCL5P42830 114 aa11□□□□□ -0.65
USP49-203ENST00000394253 FAM240AA0A1B0GVK7 77 aa10.99□□□□□ -0.65
USP49-203ENST00000394253 CGB3P0DN86 165 aa10.99□□□□□ -0.65
USP49-203ENST00000394253 IGHV2OR16-5A0A0B4J2B6 119 aa10.99□□□□□ -0.65
USP49-203ENST00000394253 ID3Q02535 119 aa10.99□□□□□ -0.65
USP49-203ENST00000394253 C1QL2Q7Z5L3 287 aa10.99□□□□□ -0.65
USP49-203ENST00000394253 MESP1Q9BRJ9 268 aa10.99□□□□□ -0.65
USP49-203ENST00000394253 LGALS9BQ3B8N2 356 aa10.99□□□□□ -0.65
USP49-203ENST00000394253 LGALS9CQ6DKI2 356 aa10.99□□□□□ -0.65
USP49-203ENST00000394253 WDR83OSQ9Y284 106 aa10.99□□□□□ -0.65
USP49-203ENST00000394253 NUP210LQ5VU65 1888 aa10.99□□□□□ -0.65
USP49-203ENST00000394253 SRSF8Q9BRL6 282 aaKnown RBP10.99□□□□□ -0.65
USP49-203ENST00000394253 CECR9P0C854 216 aa10.99□□□□□ -0.65
USP49-203ENST00000394253 NMSQ5H8A3 153 aa10.99□□□□□ -0.65
USP49-203ENST00000394253 LINC01565O15544 149 aa10.99□□□□□ -0.65
USP49-203ENST00000394253 C17orf100A8MU93 164 aa10.99□□□□□ -0.65
USP49-203ENST00000394253 Q8N8P6 123 aa10.99□□□□□ -0.65
USP49-203ENST00000394253 PRSS46E5RG02 174 aa10.98□□□□□ -0.65
USP49-203ENST00000394253 IGHV2-26A0A0B4J1V2 119 aa10.98□□□□□ -0.65
USP49-203ENST00000394253 TIMM23O14925 209 aa10.98□□□□□ -0.65
USP49-203ENST00000394253 LY6G6FQ5SQ64 297 aa10.98□□□□□ -0.65
USP49-203ENST00000394253 HS3ST6Q96QI5 342 aa10.98□□□□□ -0.65
USP49-203ENST00000394253 PRSS57Q6UWY2 283 aa10.98□□□□□ -0.65
USP49-203ENST00000394253 VSIG2Q96IQ7 327 aa10.98□□□□□ -0.65
USP49-203ENST00000394253 C2orf66Q6UXQ4 117 aa10.98□□□□□ -0.65
USP49-203ENST00000394253 PPP1R32Q7Z5V6 425 aa10.98□□□□□ -0.65
USP49-203ENST00000394253 ATP5EP56381 51 aaPredicted RBP10.98□□□□□ -0.65
USP49-203ENST00000394253 SMKR1H3BMG3 65 aa10.97□□□□□ -0.65
USP49-203ENST00000394253 CRYGCP07315 174 aa10.97□□□□□ -0.65
USP49-203ENST00000394253 FAM219BQ5XKK7 198 aa10.97□□□□□ -0.65
USP49-203ENST00000394253 HGFACQ04756 655 aa10.97□□□□□ -0.65
USP49-203ENST00000394253 PLAC1Q9HBJ0 212 aa10.97□□□□□ -0.65
USP49-203ENST00000394253 TRAV12-2A0A075B6T6 113 aa10.97□□□□□ -0.65
USP49-203ENST00000394253 PRSS47A8MTI9 375 aa10.97□□□□□ -0.65
USP49-203ENST00000394253 CELA3AP09093 270 aa10.97□□□□□ -0.65
USP49-203ENST00000394253 FAM216BQ8N7L0 139 aa10.97□□□□□ -0.65
USP49-203ENST00000394253 PRR19A6NJB7 356 aa10.96□□□□□ -0.65
USP49-203ENST00000394253 DAZ1Q9NQZ3 744 aaKnown RBP10.96□□□□□ -0.65
USP49-203ENST00000394253 C18orf32Q8TCD1 76 aa10.96□□□□□ -0.65
USP49-203ENST00000394253 K7ERJ3 54 aa10.96□□□□□ -0.65
USP49-203ENST00000394253 NREPQ16612 68 aa10.96□□□□□ -0.65
USP49-203ENST00000394253 HIGD2BQ4VC39 106 aa10.96□□□□□ -0.65
USP49-203ENST00000394253 ZNF493Q6ZR52 646 aa10.96□□□□□ -0.65
USP49-203ENST00000394253 RNF5Q99942 180 aa10.96□□□□□ -0.65
USP49-203ENST00000394253 PRSS29PA6NIE9 313 aa10.96□□□□□ -0.66
USP49-203ENST00000394253 J3QQQ9 107 aa10.96□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 56.2 ms