RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 SRRM5B3KS81 715 aa9.61□□□□□ -0.87
SYNPO-202ENST00000394243 EFNA2O43921 213 aa9.61□□□□□ -0.87
SYNPO-202ENST00000394243 IGHV1-46P01743 117 aa9.61□□□□□ -0.87
SYNPO-202ENST00000394243 TRAV41A0A0B4J266 112 aa9.61□□□□□ -0.87
SYNPO-202ENST00000394243 TCTEX1D4Q5JR98 221 aa9.61□□□□□ -0.87
SYNPO-202ENST00000394243 SPANXCQ9NY87 97 aa9.61□□□□□ -0.87
SYNPO-202ENST00000394243 SPTA1P02549 2419 aa9.6□□□□□ -0.87
SYNPO-202ENST00000394243 TINCRA0A1B0GVN0 87 aa9.6□□□□□ -0.87
SYNPO-202ENST00000394243 PAX9P55771 341 aa9.6□□□□□ -0.87
SYNPO-202ENST00000394243 DEFB125Q8N687 156 aa9.6□□□□□ -0.87
SYNPO-202ENST00000394243 TRAV26-2A0A0B4J265 109 aa9.6□□□□□ -0.87
SYNPO-202ENST00000394243 IL17RELQ6ZVW7 336 aa9.6□□□□□ -0.87
SYNPO-202ENST00000394243 FAM168AQ92567 244 aa9.6□□□□□ -0.87
SYNPO-202ENST00000394243 DKK2Q9UBU2 259 aa9.6□□□□□ -0.87
SYNPO-202ENST00000394243 DOCK7Q96N67 2140 aa9.6□□□□□ -0.87
SYNPO-202ENST00000394243 SYNJ2BPP57105 145 aa9.6□□□□□ -0.87
SYNPO-202ENST00000394243 SPACA3Q8IXA5 215 aa9.6□□□□□ -0.87
SYNPO-202ENST00000394243 GLI3P10071 1580 aa9.6□□□□□ -0.87
SYNPO-202ENST00000394243 UCNP55089 124 aa9.59□□□□□ -0.87
SYNPO-202ENST00000394243 TRPT1Q86TN4 253 aaKnown RBP9.59□□□□□ -0.87
SYNPO-202ENST00000394243 IGHV1-8P0DP01 117 aa9.59□□□□□ -0.87
SYNPO-202ENST00000394243 Q6ZS49 121 aa9.59□□□□□ -0.87
SYNPO-202ENST00000394243 COL4A1P02462 1669 aa9.59□□□□□ -0.87
SYNPO-202ENST00000394243 IGHG4P01861 327 aa9.59□□□□□ -0.87
SYNPO-202ENST00000394243 SHANK3Q9BYB0 1731 aa9.59□□□□□ -0.87
SYNPO-202ENST00000394243 PFN2P35080 140 aa9.59□□□□□ -0.87
SYNPO-202ENST00000394243 FLVCR1-AS1Q8TAF5 88 aa9.59□□□□□ -0.87
SYNPO-202ENST00000394243 KLF2Q9Y5W3 355 aaPredicted RBP9.59□□□□□ -0.87
SYNPO-202ENST00000394243 SHANK2-AS3Q9BTD1 123 aa9.59□□□□□ -0.87
SYNPO-202ENST00000394243 RALGAPA2Q2PPJ7 1873 aa9.58□□□□□ -0.88
SYNPO-202ENST00000394243 SBF2Q86WG5 1849 aa9.58□□□□□ -0.88
SYNPO-202ENST00000394243 TMEM219Q86XT9 240 aa9.58□□□□□ -0.88
SYNPO-202ENST00000394243 SIGLEC9Q9Y336 463 aa9.58□□□□□ -0.88
SYNPO-202ENST00000394243 F8VRH5 84 aa9.58□□□□□ -0.88
SYNPO-202ENST00000394243 NDUFS7O75251 213 aa9.58□□□□□ -0.88
SYNPO-202ENST00000394243 ANK1P16157 1881 aa9.58□□□□□ -0.88
SYNPO-202ENST00000394243 TRBV7-1A0A0A6YYK4 115 aa9.58□□□□□ -0.88
SYNPO-202ENST00000394243 IGKV1-16P04430 117 aa9.58□□□□□ -0.88
SYNPO-202ENST00000394243 KLRD1Q13241 179 aa9.58□□□□□ -0.88
SYNPO-202ENST00000394243 PINLYPA6NC86 204 aa9.57□□□□□ -0.88
SYNPO-202ENST00000394243 MRPL14Q6P1L8 145 aaKnown RBP9.57□□□□□ -0.88
SYNPO-202ENST00000394243 PRSS22Q9GZN4 317 aa9.57□□□□□ -0.88
SYNPO-202ENST00000394243 NPYP01303 97 aa9.57□□□□□ -0.88
SYNPO-202ENST00000394243 EFNA4P52798 201 aa9.57□□□□□ -0.88
SYNPO-202ENST00000394243 PDE6HQ13956 83 aa9.57□□□□□ -0.88
SYNPO-202ENST00000394243 SS18Q15532 418 aa9.57□□□□□ -0.88
SYNPO-202ENST00000394243 PCP2Q8IVA1 136 aa9.57□□□□□ -0.88
SYNPO-202ENST00000394243 DSCR8Q96T75 97 aa9.57□□□□□ -0.88
SYNPO-202ENST00000394243 DOCK6Q96HP0 2047 aa9.57□□□□□ -0.88
SYNPO-202ENST00000394243 DKK1O94907 266 aa9.57□□□□□ -0.88
SYNPO-202ENST00000394243 IGHG3P01860 377 aa9.57□□□□□ -0.88
SYNPO-202ENST00000394243 PRB1P04280 392 aa9.57□□□□□ -0.88
SYNPO-202ENST00000394243 TDRG1Q3Y452 100 aa9.57□□□□□ -0.88
SYNPO-202ENST00000394243 C5orf47Q569G3 176 aa9.57□□□□□ -0.88
SYNPO-202ENST00000394243 FAM231DQ6ZW35 169 aa9.57□□□□□ -0.88
SYNPO-202ENST00000394243 SPRR3Q9UBC9 169 aa9.57□□□□□ -0.88
SYNPO-202ENST00000394243 NDUFA12Q9UI09 145 aa9.57□□□□□ -0.88
SYNPO-202ENST00000394243 IGLV3-12A0A075B6K2 115 aa9.56□□□□□ -0.88
SYNPO-202ENST00000394243 PLXNA1Q9UIW2 1896 aa9.56□□□□□ -0.88
SYNPO-202ENST00000394243 TRAV25A0A0B4J276 109 aa9.56□□□□□ -0.88
SYNPO-202ENST00000394243 DTX1Q86Y01 620 aa9.56□□□□□ -0.88
SYNPO-202ENST00000394243 A0A0G2JMZ2 1700 aa9.56□□□□□ -0.88
SYNPO-202ENST00000394243 LRRC37A2A6NM11 1700 aa9.56□□□□□ -0.88
SYNPO-202ENST00000394243 LRRC37AA6NMS7 1700 aa9.56□□□□□ -0.88
SYNPO-202ENST00000394243 LCTP09848 1927 aa9.56□□□□□ -0.88
SYNPO-202ENST00000394243 UBR3Q6ZT12 1888 aa9.56□□□□□ -0.88
SYNPO-202ENST00000394243 C11orf44Q8N8P7 122 aa9.56□□□□□ -0.88
SYNPO-202ENST00000394243 PRSS29PA6NIE9 313 aa9.56□□□□□ -0.88
SYNPO-202ENST00000394243 GGNQ86UU5 652 aa9.56□□□□□ -0.88
SYNPO-202ENST00000394243 IGKV1-6A0A0C4DH72 117 aa9.55□□□□□ -0.88
SYNPO-202ENST00000394243 C5orf64Q2M2E5 130 aa9.55□□□□□ -0.88
SYNPO-202ENST00000394243 CRLF1O75462 422 aa9.55□□□□□ -0.88
SYNPO-202ENST00000394243 NDUFC2O95298 119 aa9.55□□□□□ -0.88
SYNPO-202ENST00000394243 I3L3M4 83 aa9.55□□□□□ -0.88
SYNPO-202ENST00000394243 UBE2E2Q96LR5 201 aa9.55□□□□□ -0.88
SYNPO-202ENST00000394243 HS3ST6Q96QI5 342 aa9.55□□□□□ -0.88
SYNPO-202ENST00000394243 J3QQQ9 107 aa9.55□□□□□ -0.88
SYNPO-202ENST00000394243 VMO1Q7Z5L0 202 aa9.55□□□□□ -0.88
SYNPO-202ENST00000394243 KNCNA6PVL3 124 aa9.55□□□□□ -0.88
SYNPO-202ENST00000394243 A0A1W2PPI3 338 aa9.54□□□□□ -0.88
SYNPO-202ENST00000394243 NACAE9PAV3 2078 aa9.54□□□□□ -0.88
SYNPO-202ENST00000394243 TRAV26-1A0A087WT03 109 aa9.54□□□□□ -0.88
SYNPO-202ENST00000394243 K7EN84 100 aa9.54□□□□□ -0.88
SYNPO-202ENST00000394243 RNF5Q99942 180 aa9.54□□□□□ -0.88
SYNPO-202ENST00000394243 BUB1B-PAK6H3BSN5 160 aa9.54□□□□□ -0.88
SYNPO-202ENST00000394243 J3KT08 172 aa9.54□□□□□ -0.88
SYNPO-202ENST00000394243 LTBRP36941 435 aa9.54□□□□□ -0.88
SYNPO-202ENST00000394243 ZDBF2Q9HCK1 2354 aa9.54□□□□□ -0.88
SYNPO-202ENST00000394243 SHISA9B4DS77 424 aa9.54□□□□□ -0.88
SYNPO-202ENST00000394243 C3orf56Q8N813 242 aa9.54□□□□□ -0.88
SYNPO-202ENST00000394243 CFC1BP0CG36 223 aa9.54□□□□□ -0.88
SYNPO-202ENST00000394243 CFC1P0CG37 223 aa9.54□□□□□ -0.88
SYNPO-202ENST00000394243 RNASE6Q93091 150 aaKnown RBP9.54□□□□□ -0.88
SYNPO-202ENST00000394243 SDHAF1A6NFY7 115 aa9.53□□□□□ -0.88
SYNPO-202ENST00000394243 CFPP27918 469 aa9.53□□□□□ -0.88
SYNPO-202ENST00000394243 WFDC2Q14508 124 aa9.53□□□□□ -0.88
SYNPO-202ENST00000394243 FOXI2Q6ZQN5 318 aa9.53□□□□□ -0.88
SYNPO-202ENST00000394243 ZNF747Q9BV97 191 aa9.53□□□□□ -0.88
SYNPO-202ENST00000394243 SCRT2Q9NQ03 307 aa9.53□□□□□ -0.88
SYNPO-202ENST00000394243 TMEM14BQ9NUH8 114 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms