RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 ZNF826PQ6ZT77 177 aa7.18□□□□□ -1.26
LIG3-202ENST00000378526 ICOSQ9Y6W8 199 aa7.18□□□□□ -1.26
LIG3-202ENST00000378526 YPEL3P61236 119 aaPredicted RBP7.18□□□□□ -1.26
LIG3-202ENST00000378526 SPSB3Q6PJ21 355 aa7.18□□□□□ -1.26
LIG3-202ENST00000378526 CAMTA1Q9Y6Y1 1673 aa7.18□□□□□ -1.26
LIG3-202ENST00000378526 ZNF497Q6ZNH5 498 aa7.18□□□□□ -1.26
LIG3-202ENST00000378526 COX14Q96I36 57 aa7.18□□□□□ -1.26
LIG3-202ENST00000378526 IGKV3D-7A0A0C4DH55 119 aa7.17□□□□□ -1.26
LIG3-202ENST00000378526 A0A0G2JK05 382 aa7.17□□□□□ -1.26
LIG3-202ENST00000378526 CENPVL1A0A0U1RR11 272 aa7.17□□□□□ -1.26
LIG3-202ENST00000378526 CENPVL3A0A0U1RRI6 287 aa7.17□□□□□ -1.26
LIG3-202ENST00000378526 SAP30O75446 220 aa7.17□□□□□ -1.26
LIG3-202ENST00000378526 VN1R4Q7Z5H5 301 aa7.17□□□□□ -1.26
LIG3-202ENST00000378526 LEAP2Q969E1 77 aa7.17□□□□□ -1.26
LIG3-202ENST00000378526 NUP210Q8TEM1 1887 aaPredicted RBP7.17□□□□□ -1.26
LIG3-202ENST00000378526 PMS2P5A8MQ11 134 aa7.17□□□□□ -1.26
LIG3-202ENST00000378526 C9JQL5 133 aa7.17□□□□□ -1.26
LIG3-202ENST00000378526 GATA2P23769 480 aaPredicted RBP7.17□□□□□ -1.26
LIG3-202ENST00000378526 C2orf66Q6UXQ4 117 aa7.17□□□□□ -1.26
LIG3-202ENST00000378526 RFNGQ9Y644 331 aa7.17□□□□□ -1.26
LIG3-202ENST00000378526 IGHV3-49A0A0A0MS15 119 aa7.17□□□□□ -1.26
LIG3-202ENST00000378526 CELA2BP08218 269 aaPredicted RBP7.17□□□□□ -1.26
LIG3-202ENST00000378526 C9orf139Q6ZV77 190 aa7.17□□□□□ -1.26
LIG3-202ENST00000378526 RPP25LQ8N5L8 163 aaKnown RBP7.17□□□□□ -1.26
LIG3-202ENST00000378526 HIGD1BQ9P298 99 aa7.17□□□□□ -1.26
LIG3-202ENST00000378526 PRRC2AP48634 2157 aaKnown RBP7.17□□□□□ -1.26
LIG3-202ENST00000378526 ADCYAP1P18509 176 aa7.17□□□□□ -1.26
LIG3-202ENST00000378526 TRBV7-1A0A0A6YYK4 115 aa7.17□□□□□ -1.26
LIG3-202ENST00000378526 C12orf77C9JDV5 145 aa7.17□□□□□ -1.26
LIG3-202ENST00000378526 PAX8Q06710 450 aa7.17□□□□□ -1.26
LIG3-202ENST00000378526 MRPL14Q6P1L8 145 aaKnown RBP7.17□□□□□ -1.26
LIG3-202ENST00000378526 KIAA1551Q9HCM1 1747 aa7.17□□□□□ -1.26
LIG3-202ENST00000378526 ANKRD39Q53RE8 183 aa7.17□□□□□ -1.26
LIG3-202ENST00000378526 RNF138Q8WVD3 245 aa7.17□□□□□ -1.26
LIG3-202ENST00000378526 C14orf178Q8N769 122 aaPredicted RBP7.17□□□□□ -1.26
LIG3-202ENST00000378526 PHLPP1O60346 1717 aa7.17□□□□□ -1.26
LIG3-202ENST00000378526 TRBV25-1A0A075B6N4 114 aa7.16□□□□□ -1.26
LIG3-202ENST00000378526 IGKV2-40A0A087WW87 121 aaPredicted RBP7.16□□□□□ -1.26
LIG3-202ENST00000378526 RS1O15537 224 aa7.16□□□□□ -1.26
LIG3-202ENST00000378526 IGKV2D-40P01614 121 aaPredicted RBP7.16□□□□□ -1.26
LIG3-202ENST00000378526 CHCHD2Q9Y6H1 151 aaPredicted RBP7.16□□□□□ -1.26
LIG3-202ENST00000378526 IGLL5B9A064 214 aa7.16□□□□□ -1.26
LIG3-202ENST00000378526 FXYD7P58549 80 aa7.16□□□□□ -1.26
LIG3-202ENST00000378526 CACNA1GO43497 2377 aa7.16□□□□□ -1.26
LIG3-202ENST00000378526 IGHV3OR16-13A0A075B7E8 117 aa7.16□□□□□ -1.26
LIG3-202ENST00000378526 IGHV3-74A0A0B4J1X5 117 aa7.16□□□□□ -1.26
LIG3-202ENST00000378526 SUPT4H1P63272 117 aaKnown RBP7.16□□□□□ -1.26
LIG3-202ENST00000378526 SLX1AQ9BQ83 275 aa7.16□□□□□ -1.26
LIG3-202ENST00000378526 PSCAO43653 123 aa7.16□□□□□ -1.26
LIG3-202ENST00000378526 TRBV12-3P01733 135 aa7.16□□□□□ -1.26
LIG3-202ENST00000378526 PMAIP1Q13794 54 aa7.16□□□□□ -1.26
LIG3-202ENST00000378526 EXOC3-AS1Q8N2X6 119 aa7.16□□□□□ -1.26
LIG3-202ENST00000378526 COL22A1Q8NFW1 1626 aaPredicted RBP7.16□□□□□ -1.26
LIG3-202ENST00000378526 IGHV3-35A0A0C4DH35 117 aa7.16□□□□□ -1.26
LIG3-202ENST00000378526 SRRM4A7MD48 611 aaKnown RBP7.16□□□□□ -1.26
LIG3-202ENST00000378526 IGHV3-23P01764 117 aa7.16□□□□□ -1.26
LIG3-202ENST00000378526 RNF152Q8N8N0 203 aa7.16□□□□□ -1.26
LIG3-202ENST00000378526 COL16A1Q07092 1604 aaPredicted RBP7.16□□□□□ -1.26
LIG3-202ENST00000378526 PFN1P07737 140 aaKnown RBP7.16□□□□□ -1.26
LIG3-202ENST00000378526 NRTNQ99748 197 aa7.16□□□□□ -1.26
LIG3-202ENST00000378526 KLF2Q9Y5W3 355 aaPredicted RBP7.16□□□□□ -1.26
LIG3-202ENST00000378526 TRBV10-2A0A0K0K1G8 114 aa7.16□□□□□ -1.26
LIG3-202ENST00000378526 A4D1N5 150 aa7.16□□□□□ -1.26
LIG3-202ENST00000378526 C20orf78Q9BR46 151 aa7.16□□□□□ -1.26
LIG3-202ENST00000378526 AHDC1Q5TGY3 1603 aaPredicted RBP7.15□□□□□ -1.26
LIG3-202ENST00000378526 NTN3O00634 580 aaPredicted RBP7.15□□□□□ -1.26
LIG3-202ENST00000378526 FAM231DQ6ZW35 169 aa7.15□□□□□ -1.26
LIG3-202ENST00000378526 ZNF329Q86UD4 541 aa7.15□□□□□ -1.26
LIG3-202ENST00000378526 DKK2Q9UBU2 259 aa7.15□□□□□ -1.26
LIG3-202ENST00000378526 ROS1P08922 2347 aa7.15□□□□□ -1.26
LIG3-202ENST00000378526 NRXN3Q9Y4C0 1643 aa7.15□□□□□ -1.26
LIG3-202ENST00000378526 B9A039 149 aa7.15□□□□□ -1.26
LIG3-202ENST00000378526 SAA2-SAA4A0A096LPE2 208 aa7.15□□□□□ -1.26
LIG3-202ENST00000378526 E9PQ18 207 aa7.15□□□□□ -1.26
LIG3-202ENST00000378526 SAA2P0DJI9 122 aaPredicted RBP7.15□□□□□ -1.26
LIG3-202ENST00000378526 HTN3P15516 51 aa7.15□□□□□ -1.26
LIG3-202ENST00000378526 LINC01590Q5TEZ4 76 aa7.15□□□□□ -1.26
LIG3-202ENST00000378526 NHSQ6T4R5 1651 aa7.15□□□□□ -1.26
LIG3-202ENST00000378526 UBE2E1P51965 193 aa7.15□□□□□ -1.26
LIG3-202ENST00000378526 TMEM14EPQ6UXP3 125 aa7.15□□□□□ -1.26
LIG3-202ENST00000378526 IGHV1OR15-1A0A075B7D0 117 aa7.15□□□□□ -1.27
LIG3-202ENST00000378526 MRPL35Q9NZE8 188 aaKnown RBP7.15□□□□□ -1.27
LIG3-202ENST00000378526 IGHV1OR21-1A0A087WYE8 117 aa7.15□□□□□ -1.27
LIG3-202ENST00000378526 PDLIM4P50479 330 aa7.15□□□□□ -1.27
LIG3-202ENST00000378526 AMELYQ99218 206 aa7.15□□□□□ -1.27
LIG3-202ENST00000378526 CCL3P10147 92 aa7.14□□□□□ -1.27
LIG3-202ENST00000378526 C1orf210Q8IVY1 113 aa7.14□□□□□ -1.27
LIG3-202ENST00000378526 C22orf46C9J442 243 aa7.14□□□□□ -1.27
LIG3-202ENST00000378526 Q86TA4 180 aa7.14□□□□□ -1.27
LIG3-202ENST00000378526 UPK3BQ9BT76 320 aa7.14□□□□□ -1.27
LIG3-202ENST00000378526 FANCD2OSQ96PS1 177 aa7.14□□□□□ -1.27
LIG3-202ENST00000378526 SMKR1H3BMG3 65 aa7.14□□□□□ -1.27
LIG3-202ENST00000378526 PFN2P35080 140 aa7.14□□□□□ -1.27
LIG3-202ENST00000378526 MCRIP2Q9BUT9 160 aaKnown RBP7.14□□□□□ -1.27
LIG3-202ENST00000378526 SPINK2P20155 84 aa7.14□□□□□ -1.27
LIG3-202ENST00000378526 TIMM17BO60830 172 aa7.14□□□□□ -1.27
LIG3-202ENST00000378526 WFDC2Q14508 124 aa7.14□□□□□ -1.27
LIG3-202ENST00000378526 OXLD1Q5BKU9 147 aa7.14□□□□□ -1.27
LIG3-202ENST00000378526 OPRPNQ99935 248 aaPredicted RBP7.14□□□□□ -1.27
LIG3-202ENST00000378526 RHOHQ15669 191 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms