RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 K7EPK0 472 aa9.42□□□□□ -0.9
VPS29-201ENST00000360579 CTDSP2O14595 271 aa9.42□□□□□ -0.9
VPS29-201ENST00000360579 PAX4O43316 350 aa9.42□□□□□ -0.9
VPS29-201ENST00000360579 PRB4P10163 310 aaPredicted RBP9.42□□□□□ -0.9
VPS29-201ENST00000360579 VAMP1P23763 118 aa9.42□□□□□ -0.9
VPS29-201ENST00000360579 SLAQ13239 276 aa9.42□□□□□ -0.9
VPS29-201ENST00000360579 BPIFA4PQ86YQ2 179 aa9.42□□□□□ -0.9
VPS29-201ENST00000360579 DIRAS2Q96HU8 199 aa9.42□□□□□ -0.9
VPS29-201ENST00000360579 TMEM70Q9BUB7 260 aa9.42□□□□□ -0.9
VPS29-201ENST00000360579 FUT9Q9Y231 359 aa9.42□□□□□ -0.9
VPS29-201ENST00000360579 TNFRSF18Q9Y5U5 241 aa9.42□□□□□ -0.9
VPS29-201ENST00000360579 PXMP4Q9Y6I8 212 aa9.42□□□□□ -0.9
VPS29-201ENST00000360579 LY96Q9Y6Y9 160 aa9.42□□□□□ -0.9
VPS29-201ENST00000360579 TRGV1A0A0A0MS02 117 aa9.41□□□□□ -0.9
VPS29-201ENST00000360579 ZNF324O75467 553 aaPredicted RBP9.41□□□□□ -0.9
VPS29-201ENST00000360579 FAUP35544 74 aaKnown RBP9.41□□□□□ -0.9
VPS29-201ENST00000360579 ZNF431Q8TF32 576 aaPredicted RBP9.41□□□□□ -0.9
VPS29-201ENST00000360579 NAA50Q9GZZ1 169 aaKnown RBP9.41□□□□□ -0.9
VPS29-201ENST00000360579 NPVFQ9HCQ7 196 aa9.41□□□□□ -0.9
VPS29-201ENST00000360579 MSRB1Q9NZV6 116 aa9.41□□□□□ -0.9
VPS29-201ENST00000360579 RSL24D1Q9UHA3 163 aaKnown RBP9.41□□□□□ -0.9
VPS29-201ENST00000360579 DNAH8Q96JB1 4490 aa9.41□□□□□ -0.9
VPS29-201ENST00000360579 PRAC2D3DTV9 90 aa9.4□□□□□ -0.9
VPS29-201ENST00000360579 FNDC10F2Z333 226 aa9.4□□□□□ -0.9
VPS29-201ENST00000360579 J3KRW8 73 aa9.4□□□□□ -0.9
VPS29-201ENST00000360579 TEPPQ6URK8 271 aa9.4□□□□□ -0.9
VPS29-201ENST00000360579 PATE2Q6UY27 113 aa9.4□□□□□ -0.9
VPS29-201ENST00000360579 LINC00305Q7Z4B0 112 aa9.4□□□□□ -0.9
VPS29-201ENST00000360579 ZBTB8BQ8NAP8 495 aaPredicted RBP9.4□□□□□ -0.9
VPS29-201ENST00000360579 ST6GAL2Q96JF0 529 aa9.4□□□□□ -0.9
VPS29-201ENST00000360579 LINC00467Q9BRT7 94 aa9.4□□□□□ -0.9
VPS29-201ENST00000360579 GSN-AS1Q9NRJ2 163 aa9.4□□□□□ -0.9
VPS29-201ENST00000360579 PRO0255Q9UI72 69 aa9.4□□□□□ -0.9
VPS29-201ENST00000360579 HMCN2Q8NDA2 5059 aa9.39□□□□□ -0.91
VPS29-201ENST00000360579 NPIPB6E9PJ23 425 aa9.39□□□□□ -0.91
VPS29-201ENST00000360579 SLC25A5P05141 298 aaKnown RBP9.39□□□□□ -0.91
VPS29-201ENST00000360579 CT45A10P0DMU9 189 aa9.39□□□□□ -0.91
VPS29-201ENST00000360579 EVI2AP22794 236 aa9.39□□□□□ -0.91
VPS29-201ENST00000360579 MRPL23Q16540 153 aaKnown RBP9.39□□□□□ -0.91
VPS29-201ENST00000360579 LYPD5Q6UWN5 251 aa9.39□□□□□ -0.91
VPS29-201ENST00000360579 ZNF546Q86UE3 836 aa9.39□□□□□ -0.91
VPS29-201ENST00000360579 C11orf72Q8NBR9 251 aa9.39□□□□□ -0.91
VPS29-201ENST00000360579 PSENENQ9NZ42 101 aa9.39□□□□□ -0.91
VPS29-201ENST00000360579 MGAT4CQ9UBM8 478 aa9.39□□□□□ -0.91
VPS29-201ENST00000360579 IGLV5-52A0A0A0MRZ9 124 aa9.38□□□□□ -0.91
VPS29-201ENST00000360579 SLC17A3O00476 420 aa9.38□□□□□ -0.91
VPS29-201ENST00000360579 GOSR2O14653 212 aa9.38□□□□□ -0.91
VPS29-201ENST00000360579 SPINK4O60575 86 aa9.38□□□□□ -0.91
VPS29-201ENST00000360579 HOXB5P09067 269 aa9.38□□□□□ -0.91
VPS29-201ENST00000360579 RRAS2P62070 204 aaPredicted RBP9.38□□□□□ -0.91
VPS29-201ENST00000360579 GUK1Q16774 197 aa9.38□□□□□ -0.91
VPS29-201ENST00000360579 ANXA2RQ3ZCQ2 193 aa9.38□□□□□ -0.91
VPS29-201ENST00000360579 NEGR1Q7Z3B1 354 aa9.38□□□□□ -0.91
VPS29-201ENST00000360579 EIF4E3Q8N5X7 224 aaKnown RBP9.38□□□□□ -0.91
VPS29-201ENST00000360579 NTN5Q8WTR8 489 aaPredicted RBP9.38□□□□□ -0.91
VPS29-201ENST00000360579 UBR4Q5T4S7 5183 aa9.38□□□□□ -0.91
VPS29-201ENST00000360579 LINC00854A0A1B0GVQ3 168 aa9.37□□□□□ -0.91
VPS29-201ENST00000360579 C7orf71A4D174 169 aa9.37□□□□□ -0.91
VPS29-201ENST00000360579 COX7A2P2O60397 106 aa9.37□□□□□ -0.91
VPS29-201ENST00000360579 SFT2D2O95562 160 aa9.37□□□□□ -0.91
VPS29-201ENST00000360579 SNRPCP09234 159 aaKnown RBP9.37□□□□□ -0.91
VPS29-201ENST00000360579 ID3Q02535 119 aa9.37□□□□□ -0.91
VPS29-201ENST00000360579 SLC38A11Q08AI6 406 aa9.37□□□□□ -0.91
VPS29-201ENST00000360579 IBA57Q5T440 356 aaKnown RBP9.37□□□□□ -0.91
VPS29-201ENST00000360579 C10orf126Q8N4M7 172 aa9.37□□□□□ -0.91
VPS29-201ENST00000360579 SLC25A21Q9BQT8 299 aaPredicted RBP9.37□□□□□ -0.91
VPS29-201ENST00000360579 CCDC59Q9P031 241 aaKnown RBP9.37□□□□□ -0.91
VPS29-201ENST00000360579 HHLA3Q9XRX5 114 aa9.37□□□□□ -0.91
VPS29-201ENST00000360579 IGLC2P0DOY2 106 aa9.36□□□□□ -0.91
VPS29-201ENST00000360579 CRYBA4P53673 196 aa9.36□□□□□ -0.91
VPS29-201ENST00000360579 TCL1AP56279 114 aa9.36□□□□□ -0.91
VPS29-201ENST00000360579 AP3S2P59780 193 aa9.36□□□□□ -0.91
VPS29-201ENST00000360579 POLR2GP62487 172 aaKnown RBP eCLIP9.36□□□□□ -0.91
VPS29-201ENST00000360579 HAMPP81172 84 aa9.36□□□□□ -0.91
VPS29-201ENST00000360579 OR10P1Q8NGE3 313 aa9.36□□□□□ -0.91
VPS29-201ENST00000360579 SAT2Q96F10 170 aaPredicted RBP9.36□□□□□ -0.91
VPS29-201ENST00000360579 SMIM8Q96KF7 97 aa9.36□□□□□ -0.91
VPS29-201ENST00000360579 VGLL1Q99990 258 aa9.36□□□□□ -0.91
VPS29-201ENST00000360579 KRTAP29-1A8MX34 341 aaPredicted RBP9.35□□□□□ -0.91
VPS29-201ENST00000360579 KLLNB2CW77 178 aa9.35□□□□□ -0.91
VPS29-201ENST00000360579 H3BTX0 84 aa9.35□□□□□ -0.91
VPS29-201ENST00000360579 SSSCA1O60232 199 aa9.35□□□□□ -0.91
VPS29-201ENST00000360579 IGHV3-53P01767 116 aa9.35□□□□□ -0.91
VPS29-201ENST00000360579 PLA2G1BP04054 148 aaKnown RBP9.35□□□□□ -0.91
VPS29-201ENST00000360579 SRIP30626 198 aa9.35□□□□□ -0.91
VPS29-201ENST00000360579 PPP1R1AQ13522 171 aa9.35□□□□□ -0.91
VPS29-201ENST00000360579 SERTAD4-AS1Q5TG53 156 aa9.35□□□□□ -0.91
VPS29-201ENST00000360579 TMEM14EPQ6UXP3 125 aa9.35□□□□□ -0.91
VPS29-201ENST00000360579 MRPL53Q96EL3 112 aaKnown RBP9.35□□□□□ -0.91
VPS29-201ENST00000360579 KRTAP4-8Q9BYQ9 185 aa9.35□□□□□ -0.91
VPS29-201ENST00000360579 KLF12Q9Y4X4 402 aa9.35□□□□□ -0.91
VPS29-201ENST00000360579 H3BQ15 152 aa9.34□□□□□ -0.91
VPS29-201ENST00000360579 AGPAT2O15120 278 aa9.34□□□□□ -0.91
VPS29-201ENST00000360579 PSCAO43653 123 aa9.34□□□□□ -0.91
VPS29-201ENST00000360579 PRAF2O60831 178 aa9.34□□□□□ -0.91
VPS29-201ENST00000360579 ZNF253O75346 499 aa9.34□□□□□ -0.91
VPS29-201ENST00000360579 MPDU1O75352 247 aa9.34□□□□□ -0.91
VPS29-201ENST00000360579 METTL15P1P0C7V9 234 aa9.34□□□□□ -0.91
VPS29-201ENST00000360579 OPCMLQ14982 345 aa9.34□□□□□ -0.91
VPS29-201ENST00000360579 C10orf113Q5VZT2 155 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms