RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 C1orf122Q6ZSJ8 110 aa10.33□□□□□ -0.76
COL6A3-203ENST00000353578 BMPERQ8N8U9 685 aa10.33□□□□□ -0.76
COL6A3-203ENST00000353578 I3L3M4 83 aa10.33□□□□□ -0.76
COL6A3-203ENST00000353578 IGKV3D-11A0A0A0MRZ8 115 aa10.33□□□□□ -0.76
COL6A3-203ENST00000353578 MRPS36P82909 103 aaKnown RBP10.33□□□□□ -0.76
COL6A3-203ENST00000353578 LINC00643Q86TS7 51 aa10.33□□□□□ -0.76
COL6A3-203ENST00000353578 TMEM52Q8NDY8 209 aa10.33□□□□□ -0.76
COL6A3-203ENST00000353578 DMRTC2Q8IXT2 367 aaPredicted RBP10.33□□□□□ -0.76
COL6A3-203ENST00000353578 TRAV41A0A0B4J266 112 aa10.32□□□□□ -0.76
COL6A3-203ENST00000353578 JMJD7-PLA2G4BH0Y9G9 81 aa10.32□□□□□ -0.76
COL6A3-203ENST00000353578 NTN3O00634 580 aaPredicted RBP10.32□□□□□ -0.76
COL6A3-203ENST00000353578 HCSTQ9UBK5 93 aa10.32□□□□□ -0.76
COL6A3-203ENST00000353578 A0A1W2PR77 199 aa10.32□□□□□ -0.76
COL6A3-203ENST00000353578 IGLL5B9A064 214 aa10.32□□□□□ -0.76
COL6A3-203ENST00000353578 PEAR1Q5VY43 1037 aaPredicted RBP10.32□□□□□ -0.76
COL6A3-203ENST00000353578 J3QQQ9 107 aa10.32□□□□□ -0.76
COL6A3-203ENST00000353578 IGKV3D-15A0A087WSY6 115 aa10.32□□□□□ -0.76
COL6A3-203ENST00000353578 IGKV3-15P01624 115 aa10.32□□□□□ -0.76
COL6A3-203ENST00000353578 HERVK_113P63121 156 aa10.32□□□□□ -0.76
COL6A3-203ENST00000353578 C2orf66Q6UXQ4 117 aa10.32□□□□□ -0.76
COL6A3-203ENST00000353578 PIFOQ8TCI5 191 aa10.32□□□□□ -0.76
COL6A3-203ENST00000353578 CSPG4Q6UVK1 2322 aa10.32□□□□□ -0.76
COL6A3-203ENST00000353578 MYO18BQ8IUG5 2567 aa10.31□□□□□ -0.76
COL6A3-203ENST00000353578 CCL8P80075 99 aa10.31□□□□□ -0.76
COL6A3-203ENST00000353578 FOXC1Q12948 553 aa10.31□□□□□ -0.76
COL6A3-203ENST00000353578 PCNX3Q9H6A9 2034 aa10.31□□□□□ -0.76
COL6A3-203ENST00000353578 IGHV1-69DA0A0B4J2H0 117 aa10.31□□□□□ -0.76
COL6A3-203ENST00000353578 HERV-K104P63124 156 aa10.31□□□□□ -0.76
COL6A3-203ENST00000353578 TRGV2A0A075B6R0 118 aa10.31□□□□□ -0.76
COL6A3-203ENST00000353578 Q6ZS92 163 aa10.31□□□□□ -0.76
COL6A3-203ENST00000353578 ZCCHC24Q8N2G6 241 aaKnown RBP10.31□□□□□ -0.76
COL6A3-203ENST00000353578 ZNF501Q96CX3 271 aaPredicted RBP10.31□□□□□ -0.76
COL6A3-203ENST00000353578 SUMO4Q6EEV6 95 aa10.31□□□□□ -0.76
COL6A3-203ENST00000353578 PTPRQQ9UMZ3 2332 aa10.31□□□□□ -0.76
COL6A3-203ENST00000353578 A0A0A6YYD4 124 aa10.31□□□□□ -0.76
COL6A3-203ENST00000353578 IGKV1-9A0A0C4DH69 117 aa10.3□□□□□ -0.76
COL6A3-203ENST00000353578 AGFG2O95081 481 aa10.3□□□□□ -0.76
COL6A3-203ENST00000353578 PRSS12P56730 875 aa10.3□□□□□ -0.76
COL6A3-203ENST00000353578 FAM219BQ5XKK7 198 aa10.3□□□□□ -0.76
COL6A3-203ENST00000353578 LINC01587Q99440 93 aa10.3□□□□□ -0.76
COL6A3-203ENST00000353578 SHANK2-AS3Q9BTD1 123 aa10.3□□□□□ -0.76
COL6A3-203ENST00000353578 SMIM2Q9BVW6 85 aa10.3□□□□□ -0.76
COL6A3-203ENST00000353578 TMEM133Q9H2Q1 129 aa10.3□□□□□ -0.76
COL6A3-203ENST00000353578 IGHV5-10-1A0A0J9YXX1 117 aa10.3□□□□□ -0.76
COL6A3-203ENST00000353578 IGKV1-5P01602 117 aa10.3□□□□□ -0.76
COL6A3-203ENST00000353578 PKIGQ9Y2B9 76 aa10.3□□□□□ -0.76
COL6A3-203ENST00000353578 ZNF826PQ6ZT77 177 aa10.3□□□□□ -0.76
COL6A3-203ENST00000353578 SS18Q15532 418 aa10.3□□□□□ -0.76
COL6A3-203ENST00000353578 TMEM14BQ9NUH8 114 aa10.3□□□□□ -0.76
COL6A3-203ENST00000353578 NDUFC2-KCTD14E9PQ53 114 aa10.3□□□□□ -0.76
COL6A3-203ENST00000353578 CENPVQ7Z7K6 275 aaPredicted RBP10.3□□□□□ -0.76
COL6A3-203ENST00000353578 LRRC75A-AS1Q8N1F1 130 aa10.29□□□□□ -0.76
COL6A3-203ENST00000353578 C15orf62A8K5M9 175 aa10.29□□□□□ -0.76
COL6A3-203ENST00000353578 SPACA3Q8IXA5 215 aa10.29□□□□□ -0.76
COL6A3-203ENST00000353578 C10orf105Q8TEF2 133 aa10.29□□□□□ -0.76
COL6A3-203ENST00000353578 MYO9AB2RTY4 2548 aa10.29□□□□□ -0.76
COL6A3-203ENST00000353578 IGKV3OR2-268A0A0C4DH90 116 aa10.29□□□□□ -0.76
COL6A3-203ENST00000353578 BRK1Q8WUW1 75 aa10.29□□□□□ -0.76
COL6A3-203ENST00000353578 ZNF747Q9BV97 191 aa10.29□□□□□ -0.76
COL6A3-203ENST00000353578 LSM4Q9Y4Z0 139 aaKnown RBP10.29□□□□□ -0.76
COL6A3-203ENST00000353578 FUSP35637 526 aaKnown RBP eCLIP10.28□□□□□ -0.76
COL6A3-203ENST00000353578 C6orf226Q5I0X4 101 aa10.28□□□□□ -0.76
COL6A3-203ENST00000353578 NDUFA12Q9UI09 145 aa10.28□□□□□ -0.76
COL6A3-203ENST00000353578 USMG5Q96IX5 58 aa10.28□□□□□ -0.76
COL6A3-203ENST00000353578 LOC101059948A0A1B0GTJ6 334 aa10.28□□□□□ -0.76
COL6A3-203ENST00000353578 NDUFA7O95182 113 aa10.28□□□□□ -0.76
COL6A3-203ENST00000353578 PMS2P5A8MQ11 134 aa10.28□□□□□ -0.76
COL6A3-203ENST00000353578 C9JQL5 133 aa10.28□□□□□ -0.76
COL6A3-203ENST00000353578 CRLF1O75462 422 aa10.28□□□□□ -0.76
COL6A3-203ENST00000353578 C3orf22Q8N5N4 141 aa10.28□□□□□ -0.76
COL6A3-203ENST00000353578 TRAV12-1A0A0B4J245 112 aa10.28□□□□□ -0.76
COL6A3-203ENST00000353578 PSMB8P28062 276 aa10.28□□□□□ -0.76
COL6A3-203ENST00000353578 SPATA12Q7Z6I5 190 aa10.28□□□□□ -0.76
COL6A3-203ENST00000353578 TP53TG1Q9Y2A0 90 aa10.28□□□□□ -0.76
COL6A3-203ENST00000353578 WBP1Q96G27 269 aa10.28□□□□□ -0.76
COL6A3-203ENST00000353578 TRBV25-1A0A075B6N4 114 aa10.28□□□□□ -0.76
COL6A3-203ENST00000353578 CR1LQ2VPA4 569 aa10.28□□□□□ -0.76
COL6A3-203ENST00000353578 NTN5Q8WTR8 489 aaPredicted RBP10.28□□□□□ -0.76
COL6A3-203ENST00000353578 SCRT1Q9BWW7 348 aa10.28□□□□□ -0.76
COL6A3-203ENST00000353578 SP7Q8TDD2 431 aaPredicted RBP10.27□□□□□ -0.76
COL6A3-203ENST00000353578 LENEPQ9Y5L5 61 aa10.27□□□□□ -0.76
COL6A3-203ENST00000353578 FAM223BA6NKX1 122 aa10.27□□□□□ -0.77
COL6A3-203ENST00000353578 FAM223AQ8IWN6 122 aa10.27□□□□□ -0.77
COL6A3-203ENST00000353578 HAMPP81172 84 aa10.27□□□□□ -0.77
COL6A3-203ENST00000353578 K7ERJ3 54 aa10.27□□□□□ -0.77
COL6A3-203ENST00000353578 LINC00527Q9UJ94 153 aa10.27□□□□□ -0.77
COL6A3-203ENST00000353578 C2CD3Q4AC94 2353 aa10.26□□□□□ -0.77
COL6A3-203ENST00000353578 C16orf47Q6ZP98 133 aaPredicted RBP10.26□□□□□ -0.77
COL6A3-203ENST00000353578 IGKV1D-33P01593 117 aa10.26□□□□□ -0.77
COL6A3-203ENST00000353578 IGKV1-33P01594 117 aa10.26□□□□□ -0.77
COL6A3-203ENST00000353578 WNT2P09544 360 aa10.26□□□□□ -0.77
COL6A3-203ENST00000353578 NBL1P41271 181 aa10.26□□□□□ -0.77
COL6A3-203ENST00000353578 PAX8Q06710 450 aa10.26□□□□□ -0.77
COL6A3-203ENST00000353578 MORN5Q5VZ52 161 aa10.26□□□□□ -0.77
COL6A3-203ENST00000353578 NEU4Q8WWR8 484 aaPredicted RBP10.26□□□□□ -0.77
COL6A3-203ENST00000353578 PF4P02776 101 aa10.26□□□□□ -0.77
COL6A3-203ENST00000353578 RBAKDNA6NC62 111 aa10.26□□□□□ -0.77
COL6A3-203ENST00000353578 INSP01308 110 aa10.26□□□□□ -0.77
COL6A3-203ENST00000353578 ARMS2P0C7Q2 107 aa10.26□□□□□ -0.77
COL6A3-203ENST00000353578 IGHV1OR15-9A0A0B4J2B8 117 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms