RNA–Protein interactions for RNA: ENST00000340541.4

VAPA-201, Transcript of VAMP associated protein A, humanhuman

TSL 5 BASIC

Gene VAPA, Length 1,227 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-201ENST00000340541 PHLDA1Q8WV24 401 aaPredicted RBP11.06□□□□□ -0.64
VAPA-201ENST00000340541 MRPL32Q9BYC8 188 aaKnown RBP11.06□□□□□ -0.64
VAPA-201ENST00000340541 FUT9Q9Y231 359 aa11.06□□□□□ -0.64
VAPA-201ENST00000340541 IGHV3OR16-12A0A075B7B8 117 aa11.05□□□□□ -0.64
VAPA-201ENST00000340541 SMIM9A6NGZ8 99 aa11.05□□□□□ -0.64
VAPA-201ENST00000340541 BOLA2-SMG1P6H3BVE0 249 aa11.05□□□□□ -0.64
VAPA-201ENST00000340541 AMBPP02760 352 aa11.05□□□□□ -0.64
VAPA-201ENST00000340541 PDE6HQ13956 83 aa11.05□□□□□ -0.64
VAPA-201ENST00000340541 FFAR4Q5NUL3 377 aa11.05□□□□□ -0.64
VAPA-201ENST00000340541 SCGB1C1Q8TD33 95 aa11.05□□□□□ -0.64
VAPA-201ENST00000340541 ZNF503Q96F45 646 aa11.05□□□□□ -0.64
VAPA-201ENST00000340541 CELA1Q9UNI1 258 aa11.05□□□□□ -0.64
VAPA-201ENST00000340541 GOLT1BQ9Y3E0 138 aa11.05□□□□□ -0.64
VAPA-201ENST00000340541 M0R3E3 92 aa11.04□□□□□ -0.64
VAPA-201ENST00000340541 BAP18Q8IXM2 172 aa11.04□□□□□ -0.64
VAPA-201ENST00000340541 FXYD5Q96DB9 178 aa11.04□□□□□ -0.64
VAPA-201ENST00000340541 TRAV12-2A0A075B6T6 113 aa11.03□□□□□ -0.64
VAPA-201ENST00000340541 RNF222A6NCQ9 220 aa11.03□□□□□ -0.64
VAPA-201ENST00000340541 INSP01308 110 aa11.03□□□□□ -0.64
VAPA-201ENST00000340541 TCTAP57738 103 aa11.03□□□□□ -0.64
VAPA-201ENST00000340541 RHOBP62745 196 aa11.03□□□□□ -0.64
VAPA-201ENST00000340541 BLNKQ8WV28 456 aa11.03□□□□□ -0.64
VAPA-201ENST00000340541 MRPL53Q96EL3 112 aaKnown RBP11.03□□□□□ -0.64
VAPA-201ENST00000340541 OR51M1Q9H341 326 aa11.03□□□□□ -0.64
VAPA-201ENST00000340541 TIMM9Q9Y5J7 89 aa11.03□□□□□ -0.64
VAPA-201ENST00000340541 NPIPB6E9PJ23 425 aa11.02□□□□□ -0.65
VAPA-201ENST00000340541 OR10J4P0C629 311 aa11.02□□□□□ -0.65
VAPA-201ENST00000340541 NBEAP1P0C6P0 100 aa11.02□□□□□ -0.65
VAPA-201ENST00000340541 EXOC3-AS1Q8N2X6 119 aa11.02□□□□□ -0.65
VAPA-201ENST00000340541 OR2T35Q8NGX2 323 aa11.02□□□□□ -0.65
VAPA-201ENST00000340541 PAXXQ9BUH6 204 aa11.02□□□□□ -0.65
VAPA-201ENST00000340541 TNFSF18Q9UNG2 199 aa11.02□□□□□ -0.65
VAPA-201ENST00000340541 EIF3GO75821 320 aaKnown RBP eCLIP11.01□□□□□ -0.65
VAPA-201ENST00000340541 HBE1P02100 147 aa11.01□□□□□ -0.65
VAPA-201ENST00000340541 PRM2P04554 102 aa11.01□□□□□ -0.65
VAPA-201ENST00000340541 CT45A10P0DMU9 189 aa11.01□□□□□ -0.65
VAPA-201ENST00000340541 RAB2AP61019 212 aa11.01□□□□□ -0.65
VAPA-201ENST00000340541 KIR3DS1Q14943 382 aa11.01□□□□□ -0.65
VAPA-201ENST00000340541 C12orf74Q32Q52 190 aa11.01□□□□□ -0.65
VAPA-201ENST00000340541 Q6ZTC4 211 aa11.01□□□□□ -0.65
VAPA-201ENST00000340541 OR10J6PQ8NGY7 276 aa11.01□□□□□ -0.65
VAPA-201ENST00000340541 RNF141Q8WVD5 230 aa11.01□□□□□ -0.65
VAPA-201ENST00000340541 FXYD6-FXYD2A0A087WZ82 144 aa11□□□□□ -0.65
VAPA-201ENST00000340541 LOC102723971A0A1B0GUV8 181 aa11□□□□□ -0.65
VAPA-201ENST00000340541 TMEM189A5PLL7 270 aa11□□□□□ -0.65
VAPA-201ENST00000340541 CDKN1BP46527 198 aa11□□□□□ -0.65
VAPA-201ENST00000340541 ZNF266Q14584 549 aa11□□□□□ -0.65
VAPA-201ENST00000340541 ZNF767PQ75MW2 155 aa11□□□□□ -0.65
VAPA-201ENST00000340541 RPP25LQ8N5L8 163 aaKnown RBP11□□□□□ -0.65
VAPA-201ENST00000340541 HSD17B11Q8NBQ5 300 aa11□□□□□ -0.65
VAPA-201ENST00000340541 OR2G3Q8NGZ4 309 aa11□□□□□ -0.65
VAPA-201ENST00000340541 PHYHIPLQ96FC7 376 aa11□□□□□ -0.65
VAPA-201ENST00000340541 PPP1R14DQ9NXH3 145 aa11□□□□□ -0.65
VAPA-201ENST00000340541 PRELID1Q9Y255 219 aa11□□□□□ -0.65
VAPA-201ENST00000340541 ZNF705GA8MUZ8 300 aaPredicted RBP10.99□□□□□ -0.65
VAPA-201ENST00000340541 OR7C2O60412 319 aa10.99□□□□□ -0.65
VAPA-201ENST00000340541 M6PRP20645 277 aa10.99□□□□□ -0.65
VAPA-201ENST00000340541 ATP6V0CP27449 155 aa10.99□□□□□ -0.65
VAPA-201ENST00000340541 EMP1P54849 157 aa10.99□□□□□ -0.65
VAPA-201ENST00000340541 ICAM4Q14773 271 aa10.99□□□□□ -0.65
VAPA-201ENST00000340541 RRN3P1Q2M238 152 aa10.99□□□□□ -0.65
VAPA-201ENST00000340541 ACOT6Q3I5F7 207 aaPredicted RBP10.99□□□□□ -0.65
VAPA-201ENST00000340541 INO80EQ8NBZ0 244 aaPredicted RBP10.99□□□□□ -0.65
VAPA-201ENST00000340541 ODF3Q96PU9 254 aa10.99□□□□□ -0.65
VAPA-201ENST00000340541 PSMG3Q9BT73 122 aaPredicted RBP10.99□□□□□ -0.65
VAPA-201ENST00000340541 TMEM208Q9BTX3 173 aa10.99□□□□□ -0.65
VAPA-201ENST00000340541 DKK2Q9UBU2 259 aa10.99□□□□□ -0.65
VAPA-201ENST00000340541 PLAC8L1A1L4L8 177 aa10.98□□□□□ -0.65
VAPA-201ENST00000340541 C11orf94C9JXX5 98 aa10.98□□□□□ -0.65
VAPA-201ENST00000340541 SPART-AS1P0CW21 52 aa10.98□□□□□ -0.65
VAPA-201ENST00000340541 UBE2L3P68036 154 aaKnown RBP10.98□□□□□ -0.65
VAPA-201ENST00000340541 ERCC8Q13216 396 aa10.98□□□□□ -0.65
VAPA-201ENST00000340541 KHDC3LQ587J8 217 aa10.98□□□□□ -0.65
VAPA-201ENST00000340541 GFI1BQ5VTD9 330 aa10.98□□□□□ -0.65
VAPA-201ENST00000340541 C2CD4CQ8TF44 421 aa10.98□□□□□ -0.65
VAPA-201ENST00000340541 FAM19A4Q96LR4 140 aa10.98□□□□□ -0.65
VAPA-201ENST00000340541 AAMDCQ9H7C9 122 aa10.98□□□□□ -0.65
VAPA-201ENST00000340541 YTHDF2Q9Y5A9 579 aaKnown RBP10.98□□□□□ -0.65
VAPA-201ENST00000340541 TRAV10A0A0B4J240 114 aa10.97□□□□□ -0.65
VAPA-201ENST00000340541 SMLR1H3BR10 107 aa10.97□□□□□ -0.65
VAPA-201ENST00000340541 AZU1P20160 251 aa10.97□□□□□ -0.65
VAPA-201ENST00000340541 TSPOP30536 169 aa10.97□□□□□ -0.65
VAPA-201ENST00000340541 TAS2R45P59539 299 aa10.97□□□□□ -0.65
VAPA-201ENST00000340541 FAM222AQ5U5X8 452 aa10.97□□□□□ -0.65
VAPA-201ENST00000340541 RPL7L1Q6DKI1 246 aaKnown RBP10.97□□□□□ -0.65
VAPA-201ENST00000340541 FAM122CQ6P4D5 195 aa10.97□□□□□ -0.65
VAPA-201ENST00000340541 TMEM256Q8N2U0 113 aa10.97□□□□□ -0.65
VAPA-201ENST00000340541 OR10G4Q8NGN3 311 aa10.97□□□□□ -0.65
VAPA-201ENST00000340541 OR10G9Q8NGN4 311 aa10.97□□□□□ -0.65
VAPA-201ENST00000340541 OR10G7Q8NGN6 311 aa10.97□□□□□ -0.65
VAPA-201ENST00000340541 AGPAT4-IT1Q9H0P7 198 aa10.97□□□□□ -0.65
VAPA-201ENST00000340541 SH3BGRL3Q9H299 93 aa10.97□□□□□ -0.65
VAPA-201ENST00000340541 KMT2AQ03164 3969 aa10.97□□□□□ -0.65
VAPA-201ENST00000340541 IGKV2-40A0A087WW87 121 aaPredicted RBP10.96□□□□□ -0.65
VAPA-201ENST00000340541 IGKV2D-40P01614 121 aaPredicted RBP10.96□□□□□ -0.65
VAPA-201ENST00000340541 TAS2R60P59551 318 aa10.96□□□□□ -0.65
VAPA-201ENST00000340541 RANP62826 216 aaKnown RBP10.96□□□□□ -0.65
VAPA-201ENST00000340541 C9orf47Q6ZRZ4 202 aa10.96□□□□□ -0.65
VAPA-201ENST00000340541 LYPD1Q8N2G4 141 aa10.96□□□□□ -0.65
VAPA-201ENST00000340541 LINC01587Q99440 93 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms