RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 IGLV2-23P01705 113 aa10.2□□□□□ -0.78
SDC3-201ENST00000336798 MPZP25189 248 aa10.2□□□□□ -0.78
SDC3-201ENST00000336798 TRBV25-1A0A075B6N4 114 aa10.19□□□□□ -0.78
SDC3-201ENST00000336798 ZNRF2Q8NHG8 242 aa10.19□□□□□ -0.78
SDC3-201ENST00000336798 CHAC1Q9BUX1 264 aa10.19□□□□□ -0.78
SDC3-201ENST00000336798 A0A0G2JRQ6 117 aa10.19□□□□□ -0.78
SDC3-201ENST00000336798 K7EP34 96 aa10.19□□□□□ -0.78
SDC3-201ENST00000336798 TRPT1Q86TN4 253 aaKnown RBP10.19□□□□□ -0.78
SDC3-201ENST00000336798 MDS2Q8NDY4 140 aa10.19□□□□□ -0.78
SDC3-201ENST00000336798 IGF2BP2-AS1Q96M15 143 aa10.19□□□□□ -0.78
SDC3-201ENST00000336798 PNRC2Q9NPJ4 139 aaKnown RBP10.19□□□□□ -0.78
SDC3-201ENST00000336798 C20orf144Q9BQM9 153 aa10.19□□□□□ -0.78
SDC3-201ENST00000336798 OVOL2Q9BRP0 275 aa10.18□□□□□ -0.78
SDC3-201ENST00000336798 OOSP1A8MZH6 123 aa10.18□□□□□ -0.78
SDC3-201ENST00000336798 SYS1-DBNDD2H3BUS1 97 aa10.18□□□□□ -0.78
SDC3-201ENST00000336798 CCL25O15444 150 aa10.18□□□□□ -0.78
SDC3-201ENST00000336798 RNASE2P10153 161 aaKnown RBP10.18□□□□□ -0.78
SDC3-201ENST00000336798 PRSS57Q6UWY2 283 aa10.18□□□□□ -0.78
SDC3-201ENST00000336798 Q86TA4 180 aa10.18□□□□□ -0.78
SDC3-201ENST00000336798 A0A0J9YY99 117 aa10.18□□□□□ -0.78
SDC3-201ENST00000336798 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.18□□□□□ -0.78
SDC3-201ENST00000336798 NDUFB8O95169 186 aa10.18□□□□□ -0.78
SDC3-201ENST00000336798 DEFB105AQ8NG35 78 aa10.18□□□□□ -0.78
SDC3-201ENST00000336798 CYTL1Q9NRR1 136 aa10.18□□□□□ -0.78
SDC3-201ENST00000336798 FAM186AA6NE01 2351 aa10.18□□□□□ -0.78
SDC3-201ENST00000336798 ALPK2Q86TB3 2170 aa10.18□□□□□ -0.78
SDC3-201ENST00000336798 INTS1Q8N201 2190 aaKnown RBP10.18□□□□□ -0.78
SDC3-201ENST00000336798 DUX4L9Q6RFH8 374 aaPredicted RBP10.18□□□□□ -0.78
SDC3-201ENST00000336798 LRRC37AA6NMS7 1700 aa10.18□□□□□ -0.78
SDC3-201ENST00000336798 TAF1LQ8IZX4 1826 aa10.18□□□□□ -0.78
SDC3-201ENST00000336798 C15orf62A8K5M9 175 aa10.18□□□□□ -0.78
SDC3-201ENST00000336798 IGKV1-39P01597 117 aa10.18□□□□□ -0.78
SDC3-201ENST00000336798 IGKV1D-39P04432 117 aa10.18□□□□□ -0.78
SDC3-201ENST00000336798 BRCA1P38398 1863 aaKnown RBP10.18□□□□□ -0.78
SDC3-201ENST00000336798 YLPM1P49750 1951 aaKnown RBP10.18□□□□□ -0.78
SDC3-201ENST00000336798 C9orf118A6NHY6 69 aa10.17□□□□□ -0.78
SDC3-201ENST00000336798 FBLN5Q9UBX5 448 aa10.17□□□□□ -0.78
SDC3-201ENST00000336798 MORN5Q5VZ52 161 aa10.17□□□□□ -0.78
SDC3-201ENST00000336798 HS3ST6Q96QI5 342 aa10.17□□□□□ -0.78
SDC3-201ENST00000336798 CACNA1DQ01668 2161 aa10.17□□□□□ -0.78
SDC3-201ENST00000336798 A0A1W2PPI3 338 aa10.17□□□□□ -0.78
SDC3-201ENST00000336798 KLF5Q13887 457 aaPredicted RBP10.17□□□□□ -0.78
SDC3-201ENST00000336798 RNF5Q99942 180 aa10.17□□□□□ -0.78
SDC3-201ENST00000336798 SDK2Q58EX2 2172 aa10.17□□□□□ -0.78
SDC3-201ENST00000336798 CR1LQ2VPA4 569 aa10.17□□□□□ -0.78
SDC3-201ENST00000336798 TP53BP1Q12888 1972 aaPredicted RBP10.17□□□□□ -0.78
SDC3-201ENST00000336798 HAMPP81172 84 aa10.17□□□□□ -0.78
SDC3-201ENST00000336798 NMSQ5H8A3 153 aa10.17□□□□□ -0.78
SDC3-201ENST00000336798 Q6ZVH6 145 aa10.17□□□□□ -0.78
SDC3-201ENST00000336798 SCRT2Q9NQ03 307 aa10.17□□□□□ -0.78
SDC3-201ENST00000336798 NYNRINQ9P2P1 1898 aaKnown RBP10.17□□□□□ -0.78
SDC3-201ENST00000336798 TET1Q8NFU7 2136 aa10.17□□□□□ -0.78
SDC3-201ENST00000336798 PRSS29PA6NIE9 313 aa10.16□□□□□ -0.78
SDC3-201ENST00000336798 FANCMQ8IYD8 2048 aa10.16□□□□□ -0.78
SDC3-201ENST00000336798 TCTEX1D4Q5JR98 221 aa10.16□□□□□ -0.78
SDC3-201ENST00000336798 H3BMM0 161 aa10.16□□□□□ -0.78
SDC3-201ENST00000336798 TAL2Q16559 108 aa10.16□□□□□ -0.78
SDC3-201ENST00000336798 MST1LQ2TV78 715 aa10.16□□□□□ -0.78
SDC3-201ENST00000336798 UBE2WQ96B02 151 aa10.16□□□□□ -0.78
SDC3-201ENST00000336798 Q9HAA7 133 aa10.16□□□□□ -0.78
SDC3-201ENST00000336798 IGKV1OR2-108A0A075B7D4 117 aa10.16□□□□□ -0.78
SDC3-201ENST00000336798 LINC01549A6NIU2 74 aa10.16□□□□□ -0.78
SDC3-201ENST00000336798 TMEM14EPQ6UXP3 125 aa10.16□□□□□ -0.78
SDC3-201ENST00000336798 SBF2Q86WG5 1849 aa10.16□□□□□ -0.78
SDC3-201ENST00000336798 TRBV20-1A0A075B6N2 111 aa10.15□□□□□ -0.78
SDC3-201ENST00000336798 VWC2Q2TAL6 325 aa10.15□□□□□ -0.78
SDC3-201ENST00000336798 GREB1Q4ZG55 1949 aa10.15□□□□□ -0.78
SDC3-201ENST00000336798 A0A1B0GUS0 222 aa10.15□□□□□ -0.78
SDC3-201ENST00000336798 SOCS3O14543 225 aa10.15□□□□□ -0.78
SDC3-201ENST00000336798 ANGP03950 147 aaKnown RBP10.15□□□□□ -0.78
SDC3-201ENST00000336798 TEX36Q5VZQ5 186 aa10.15□□□□□ -0.78
SDC3-201ENST00000336798 SHANK2-AS3Q9BTD1 123 aa10.15□□□□□ -0.78
SDC3-201ENST00000336798 CACNA1GO43497 2377 aa10.15□□□□□ -0.78
SDC3-201ENST00000336798 IGHV4-4A0A075B6R2 117 aa10.15□□□□□ -0.78
SDC3-201ENST00000336798 CRYBA4P53673 196 aa10.15□□□□□ -0.78
SDC3-201ENST00000336798 SPTA1P02549 2419 aa10.15□□□□□ -0.78
SDC3-201ENST00000336798 DOCK6Q96HP0 2047 aa10.15□□□□□ -0.78
SDC3-201ENST00000336798 IGHV1-69DA0A0B4J2H0 117 aa10.15□□□□□ -0.78
SDC3-201ENST00000336798 hADV29S1A0JD25 119 aa10.15□□□□□ -0.78
SDC3-201ENST00000336798 IGHV1-69P01742 117 aa10.15□□□□□ -0.78
SDC3-201ENST00000336798 MMP23AO75900 390 aa10.15□□□□□ -0.79
SDC3-201ENST00000336798 IGFBPL1Q8WX77 278 aa10.15□□□□□ -0.79
SDC3-201ENST00000336798 ZDBF2Q9HCK1 2354 aa10.14□□□□□ -0.79
SDC3-201ENST00000336798 C22orf46C9J442 243 aa10.14□□□□□ -0.79
SDC3-201ENST00000336798 FAM120AOSQ5T036 256 aa10.14□□□□□ -0.79
SDC3-201ENST00000336798 LHFPL1Q86WI0 220 aa10.14□□□□□ -0.79
SDC3-201ENST00000336798 RS1O15537 224 aa10.14□□□□□ -0.79
SDC3-201ENST00000336798 IGHV2-5P01817 119 aa10.14□□□□□ -0.79
SDC3-201ENST00000336798 PRB2P02812 416 aaPredicted RBP10.14□□□□□ -0.79
SDC3-201ENST00000336798 ARID2Q68CP9 1835 aa10.14□□□□□ -0.79
SDC3-201ENST00000336798 I3L3M4 83 aa10.14□□□□□ -0.79
SDC3-201ENST00000336798 Q6ZRM9 215 aa10.14□□□□□ -0.79
SDC3-201ENST00000336798 SCN10AQ9Y5Y9 1956 aa10.14□□□□□ -0.79
SDC3-201ENST00000336798 TRIOBPQ9H2D6 2365 aa10.14□□□□□ -0.79
SDC3-201ENST00000336798 KIF26BQ2KJY2 2108 aa10.14□□□□□ -0.79
SDC3-201ENST00000336798 IGKV2D-24A0A075B6R9 120 aa10.14□□□□□ -0.79
SDC3-201ENST00000336798 UBE2BP63146 152 aa10.14□□□□□ -0.79
SDC3-201ENST00000336798 TRAV26-1A0A087WT03 109 aa10.13□□□□□ -0.79
SDC3-201ENST00000336798 B3GALT5-AS1P59052 145 aa10.13□□□□□ -0.79
SDC3-201ENST00000336798 LINC01559Q495D7 138 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 53.7 ms