RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 TOMM40O96008 361 aa8.21□□□□□ -1.1
CHD3-201ENST00000330494 SPSB3Q6PJ21 355 aa8.21□□□□□ -1.1
CHD3-201ENST00000330494 LINC01551Q86U37 167 aa8.21□□□□□ -1.1
CHD3-201ENST00000330494 FAM215AQ9Y5M1 114 aa8.21□□□□□ -1.1
CHD3-201ENST00000330494 RBMY1BA6NDE4 496 aaKnown RBP8.21□□□□□ -1.1
CHD3-201ENST00000330494 RBMY1EA6NEQ0 496 aaKnown RBP8.21□□□□□ -1.1
CHD3-201ENST00000330494 RBMY1DP0C7P1 496 aaKnown RBP8.21□□□□□ -1.1
CHD3-201ENST00000330494 RBMY1A1P0DJD3 496 aaKnown RBP8.21□□□□□ -1.1
CHD3-201ENST00000330494 RBMY1CP0DJD4 496 aa8.21□□□□□ -1.1
CHD3-201ENST00000330494 DEFB131AP59861 70 aa8.21□□□□□ -1.1
CHD3-201ENST00000330494 KIR3DS1Q14943 382 aa8.21□□□□□ -1.1
CHD3-201ENST00000330494 NCOR1P1Q9H4R4 102 aa8.21□□□□□ -1.1
CHD3-201ENST00000330494 DEFB130BP0DP73 79 aa8.2□□□□□ -1.1
CHD3-201ENST00000330494 DEFB130AP0DP74 79 aa8.2□□□□□ -1.1
CHD3-201ENST00000330494 SPRNQ5BIV9 151 aa8.2□□□□□ -1.1
CHD3-201ENST00000330494 DTX1Q86Y01 620 aa8.2□□□□□ -1.1
CHD3-201ENST00000330494 KNCNA6PVL3 124 aa8.2□□□□□ -1.1
CHD3-201ENST00000330494 GUSBP1Q15486 140 aa8.2□□□□□ -1.1
CHD3-201ENST00000330494 MRPL52Q86TS9 123 aaKnown RBP8.2□□□□□ -1.1
CHD3-201ENST00000330494 MRAPQ8TCY5 172 aa8.2□□□□□ -1.1
CHD3-201ENST00000330494 IGHV3-16A0A0C4DH30 117 aa8.2□□□□□ -1.1
CHD3-201ENST00000330494 NDUFB8O95169 186 aa8.2□□□□□ -1.1
CHD3-201ENST00000330494 SLC25A16P16260 332 aa8.2□□□□□ -1.1
CHD3-201ENST00000330494 C9orf153Q5TBE3 101 aa8.2□□□□□ -1.1
CHD3-201ENST00000330494 MED13Q9UHV7 2174 aa8.2□□□□□ -1.1
CHD3-201ENST00000330494 LAGE3Q14657 143 aa8.2□□□□□ -1.1
CHD3-201ENST00000330494 MS4A6AQ9H2W1 248 aa8.2□□□□□ -1.1
CHD3-201ENST00000330494 A8MWP6 167 aa8.19□□□□□ -1.1
CHD3-201ENST00000330494 RSPO1Q2MKA7 263 aaPredicted RBP8.19□□□□□ -1.1
CHD3-201ENST00000330494 IFI27L1Q96BM0 104 aa8.19□□□□□ -1.1
CHD3-201ENST00000330494 SLC25A2Q9BXI2 301 aa8.19□□□□□ -1.1
CHD3-201ENST00000330494 LIME1Q9H400 295 aa8.19□□□□□ -1.1
CHD3-201ENST00000330494 COL4A3Q01955 1670 aa8.19□□□□□ -1.1
CHD3-201ENST00000330494 IGHV1-69DA0A0B4J2H0 117 aa8.19□□□□□ -1.1
CHD3-201ENST00000330494 FAM223BA6NKX1 122 aa8.19□□□□□ -1.1
CHD3-201ENST00000330494 IGHV1-69P01742 117 aa8.19□□□□□ -1.1
CHD3-201ENST00000330494 FAM223AQ8IWN6 122 aa8.19□□□□□ -1.1
CHD3-201ENST00000330494 PRADC1Q9BSG0 188 aa8.19□□□□□ -1.1
CHD3-201ENST00000330494 XCL2Q9UBD3 114 aa8.19□□□□□ -1.1
CHD3-201ENST00000330494 OOSP1A8MZH6 123 aa8.19□□□□□ -1.1
CHD3-201ENST00000330494 LINC00158P58513 81 aa8.19□□□□□ -1.1
CHD3-201ENST00000330494 ATXN8Q156A1 80 aa8.19□□□□□ -1.1
CHD3-201ENST00000330494 SPINK13Q1W4C9 94 aa8.19□□□□□ -1.1
CHD3-201ENST00000330494 NXT2Q9NPJ8 142 aaKnown RBP8.19□□□□□ -1.1
CHD3-201ENST00000330494 KLK9Q9UKQ9 250 aa8.19□□□□□ -1.1
CHD3-201ENST00000330494 ERG28Q9UKR5 140 aa8.19□□□□□ -1.1
CHD3-201ENST00000330494 OBSL1O75147 1896 aa8.19□□□□□ -1.1
CHD3-201ENST00000330494 FAM110DQ8TAY7 271 aaPredicted RBP8.19□□□□□ -1.1
CHD3-201ENST00000330494 CHCHD1Q96BP2 118 aaKnown RBP8.19□□□□□ -1.1
CHD3-201ENST00000330494 USMG5Q96IX5 58 aa8.19□□□□□ -1.1
CHD3-201ENST00000330494 PIP4P1Q86T03 277 aa8.19□□□□□ -1.1
CHD3-201ENST00000330494 SNHG12Q9BXW3 62 aa8.19□□□□□ -1.1
CHD3-201ENST00000330494 TCF15Q12870 199 aa8.18□□□□□ -1.1
CHD3-201ENST00000330494 IGHV2-70DA0A0C4DH43 119 aa8.18□□□□□ -1.1
CHD3-201ENST00000330494 IGFL3Q6UXB1 125 aa8.18□□□□□ -1.1
CHD3-201ENST00000330494 AMN1Q8IY45 258 aa8.18□□□□□ -1.1
CHD3-201ENST00000330494 CSTL1Q9H114 145 aa8.18□□□□□ -1.1
CHD3-201ENST00000330494 CEP192Q8TEP8 1941 aa8.18□□□□□ -1.1
CHD3-201ENST00000330494 RNF5Q99942 180 aa8.18□□□□□ -1.1
CHD3-201ENST00000330494 TSSC4Q9Y5U2 329 aaPredicted RBP8.18□□□□□ -1.1
CHD3-201ENST00000330494 CACNA1HO95180 2353 aa8.18□□□□□ -1.1
CHD3-201ENST00000330494 TRBV24-1A0A075B6N3 115 aa8.18□□□□□ -1.1
CHD3-201ENST00000330494 TRAV12-2A0A075B6T6 113 aa8.18□□□□□ -1.1
CHD3-201ENST00000330494 A0A087WX48 190 aa8.18□□□□□ -1.1
CHD3-201ENST00000330494 UBE2E1P51965 193 aa8.18□□□□□ -1.1
CHD3-201ENST00000330494 CR1LQ2VPA4 569 aa8.18□□□□□ -1.1
CHD3-201ENST00000330494 IGLV3-9A0A075B6K5 115 aa8.18□□□□□ -1.1
CHD3-201ENST00000330494 ZNF134P52741 427 aa8.18□□□□□ -1.1
CHD3-201ENST00000330494 LOXP28300 417 aaPredicted RBP8.17□□□□□ -1.1
CHD3-201ENST00000330494 CEACAM8P31997 349 aaPredicted RBP8.17□□□□□ -1.1
CHD3-201ENST00000330494 DLX4Q92988 240 aaPredicted RBP8.17□□□□□ -1.1
CHD3-201ENST00000330494 PCNX3Q9H6A9 2034 aa8.17□□□□□ -1.1
CHD3-201ENST00000330494 C3orf79P0CE67 100 aa8.17□□□□□ -1.1
CHD3-201ENST00000330494 ORMDL2Q53FV1 153 aa8.17□□□□□ -1.1
CHD3-201ENST00000330494 NRGNQ92686 78 aa8.17□□□□□ -1.1
CHD3-201ENST00000330494 POLR3KQ9Y2Y1 108 aaPredicted RBP8.17□□□□□ -1.1
CHD3-201ENST00000330494 FREM1Q5H8C1 2179 aa8.17□□□□□ -1.1
CHD3-201ENST00000330494 M0R2P5 195 aa8.17□□□□□ -1.1
CHD3-201ENST00000330494 C2orf82Q6UX34 121 aa8.17□□□□□ -1.1
CHD3-201ENST00000330494 ATP6V0BQ99437 205 aa8.17□□□□□ -1.1
CHD3-201ENST00000330494 TMEM242Q9NWH2 141 aa8.17□□□□□ -1.1
CHD3-201ENST00000330494 TMEM14BQ9NUH8 114 aa8.17□□□□□ -1.1
CHD3-201ENST00000330494 CFHR2P36980 270 aa8.17□□□□□ -1.1
CHD3-201ENST00000330494 GATA4P43694 442 aa8.16□□□□□ -1.1
CHD3-201ENST00000330494 DAZ1Q9NQZ3 744 aaKnown RBP8.16□□□□□ -1.1
CHD3-201ENST00000330494 ZNF833PQ6ZTB9 187 aa8.16□□□□□ -1.1
CHD3-201ENST00000330494 C9orf139Q6ZV77 190 aa8.16□□□□□ -1.1
CHD3-201ENST00000330494 ATP5L2Q7Z4Y8 100 aa8.16□□□□□ -1.1
CHD3-201ENST00000330494 VOPP1Q96AW1 172 aa8.16□□□□□ -1.1
CHD3-201ENST00000330494 CYYR1Q96J86 154 aa8.16□□□□□ -1.1
CHD3-201ENST00000330494 C1orf159Q96HA4 380 aa8.16□□□□□ -1.1
CHD3-201ENST00000330494 TANC2Q9HCD6 1990 aa8.16□□□□□ -1.1
CHD3-201ENST00000330494 IGHV2-70P01814 119 aa8.16□□□□□ -1.1
CHD3-201ENST00000330494 CHD3Q12873 2000 aaKnown RBP8.16□□□□□ -1.1
CHD3-201ENST00000330494 FAM231BA6NCW3 169 aa8.16□□□□□ -1.1
CHD3-201ENST00000330494 GGTLC3B5MD39 225 aa8.16□□□□□ -1.1
CHD3-201ENST00000330494 SS18L2Q9UHA2 77 aa8.16□□□□□ -1.1
CHD3-201ENST00000330494 TRAV13-1A0A0B4J241 112 aa8.15□□□□□ -1.1
CHD3-201ENST00000330494 NBL1P41271 181 aa8.15□□□□□ -1.1
CHD3-201ENST00000330494 J3QKU1 62 aa8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms