RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 DKK2Q9UBU2 259 aa11.65□□□□□ -0.54
LSM1-201ENST00000311351 ALG5Q9Y673 324 aa11.65□□□□□ -0.54
LSM1-201ENST00000311351 ZNF705GA8MUZ8 300 aaPredicted RBP11.64□□□□□ -0.55
LSM1-201ENST00000311351 PRAC2D3DTV9 90 aa11.64□□□□□ -0.55
LSM1-201ENST00000311351 TCTAP57738 103 aa11.64□□□□□ -0.55
LSM1-201ENST00000311351 CHAC2Q8WUX2 184 aa11.64□□□□□ -0.55
LSM1-201ENST00000311351 SAT2Q96F10 170 aaPredicted RBP11.64□□□□□ -0.55
LSM1-201ENST00000311351 PARD6GQ9BYG4 376 aaPredicted RBP11.64□□□□□ -0.55
LSM1-201ENST00000311351 MPDU1O75352 247 aa11.63□□□□□ -0.55
LSM1-201ENST00000311351 RNF126Q9BV68 326 aa11.63□□□□□ -0.55
LSM1-201ENST00000311351 MED28Q9H204 178 aa11.63□□□□□ -0.55
LSM1-201ENST00000311351 PPP1R14DQ9NXH3 145 aa11.63□□□□□ -0.55
LSM1-201ENST00000311351 ZNF586Q9NXT0 402 aa11.63□□□□□ -0.55
LSM1-201ENST00000311351 MPC2O95563 127 aa11.62□□□□□ -0.55
LSM1-201ENST00000311351 PYYP10082 97 aa11.62□□□□□ -0.55
LSM1-201ENST00000311351 ASB13Q8WXK3 278 aa11.62□□□□□ -0.55
LSM1-201ENST00000311351 NIPSNAP3BQ9BS92 247 aa11.62□□□□□ -0.55
LSM1-201ENST00000311351 DNAH10Q8IVF4 4471 aa11.62□□□□□ -0.55
LSM1-201ENST00000311351 FRAS1Q86XX4 4008 aa11.61□□□□□ -0.55
LSM1-201ENST00000311351 TEX48A0A1B0GUV7 120 aa11.61□□□□□ -0.55
LSM1-201ENST00000311351 KIR3DS1Q14943 382 aa11.61□□□□□ -0.55
LSM1-201ENST00000311351 WDR61Q9GZS3 305 aaKnown RBP11.61□□□□□ -0.55
LSM1-201ENST00000311351 AZU1P20160 251 aa11.6□□□□□ -0.55
LSM1-201ENST00000311351 CDKN1BP46527 198 aa11.6□□□□□ -0.55
LSM1-201ENST00000311351 GUK1Q16774 197 aa11.6□□□□□ -0.55
LSM1-201ENST00000311351 MIR17HGQ75NE6 70 aa11.6□□□□□ -0.55
LSM1-201ENST00000311351 OR10J6PQ8NGY7 276 aa11.6□□□□□ -0.55
LSM1-201ENST00000311351 SLC25A2Q9BXI2 301 aa11.6□□□□□ -0.55
LSM1-201ENST00000311351 TMEM14CQ9P0S9 112 aa11.6□□□□□ -0.55
LSM1-201ENST00000311351 MBD2Q9UBB5 411 aa11.6□□□□□ -0.55
LSM1-201ENST00000311351 HSPB11Q9Y547 144 aa11.6□□□□□ -0.55
LSM1-201ENST00000311351 TRBV19A0A075B6N1 114 aa11.59□□□□□ -0.55
LSM1-201ENST00000311351 M0R3E3 92 aa11.59□□□□□ -0.55
LSM1-201ENST00000311351 NDUFB4O95168 129 aa11.59□□□□□ -0.55
LSM1-201ENST00000311351 HTN3P15516 51 aa11.59□□□□□ -0.55
LSM1-201ENST00000311351 BLNKQ8WV28 456 aa11.59□□□□□ -0.55
LSM1-201ENST00000311351 ATP5SQ99766 215 aa11.59□□□□□ -0.55
LSM1-201ENST00000311351 SMIM3Q9BZL3 60 aa11.59□□□□□ -0.55
LSM1-201ENST00000311351 KCNIP2Q9NS61 270 aa11.59□□□□□ -0.55
LSM1-201ENST00000311351 PLAC8L1A1L4L8 177 aa11.58□□□□□ -0.56
LSM1-201ENST00000311351 J3KRW8 73 aa11.58□□□□□ -0.56
LSM1-201ENST00000311351 ZNF253O75346 499 aa11.58□□□□□ -0.56
LSM1-201ENST00000311351 HTN1P15515 57 aa11.58□□□□□ -0.56
LSM1-201ENST00000311351 DAD1P61803 113 aa11.58□□□□□ -0.56
LSM1-201ENST00000311351 FAM167A-AS1Q96KT0 104 aa11.58□□□□□ -0.56
LSM1-201ENST00000311351 LINC01587Q99440 93 aa11.58□□□□□ -0.56
LSM1-201ENST00000311351 NDUFAF3Q9BU61 184 aa11.58□□□□□ -0.56
LSM1-201ENST00000311351 NPIPB6E9PJ23 425 aa11.57□□□□□ -0.56
LSM1-201ENST00000311351 HIST1H1EP10412 219 aaKnown RBP11.57□□□□□ -0.56
LSM1-201ENST00000311351 RPL12P30050 165 aaKnown RBP11.57□□□□□ -0.56
LSM1-201ENST00000311351 TSPOP30536 169 aa11.57□□□□□ -0.56
LSM1-201ENST00000311351 OXA1LQ15070 435 aa11.57□□□□□ -0.56
LSM1-201ENST00000311351 GFI1BQ5VTD9 330 aa11.57□□□□□ -0.56
LSM1-201ENST00000311351 TMEM256Q8N2U0 113 aa11.57□□□□□ -0.56
LSM1-201ENST00000311351 TIMM9Q9Y5J7 89 aa11.57□□□□□ -0.56
LSM1-201ENST00000311351 CT45A10P0DMU9 189 aa11.56□□□□□ -0.56
LSM1-201ENST00000311351 TAS2R60P59551 318 aa11.56□□□□□ -0.56
LSM1-201ENST00000311351 FCN2Q15485 313 aa11.56□□□□□ -0.56
LSM1-201ENST00000311351 EXOC3-AS1Q8N2X6 119 aa11.56□□□□□ -0.56
LSM1-201ENST00000311351 MRPL53Q96EL3 112 aaKnown RBP11.56□□□□□ -0.56
LSM1-201ENST00000311351 LYRM9A8MSI8 78 aa11.55□□□□□ -0.56
LSM1-201ENST00000311351 C17orf112F2Z3M2 114 aa11.55□□□□□ -0.56
LSM1-201ENST00000311351 GIPP09681 153 aaPredicted RBP11.55□□□□□ -0.56
LSM1-201ENST00000311351 DEFB130BP0DP73 79 aa11.55□□□□□ -0.56
LSM1-201ENST00000311351 DEFB130AP0DP74 79 aa11.55□□□□□ -0.56
LSM1-201ENST00000311351 ERCC8Q13216 396 aa11.55□□□□□ -0.56
LSM1-201ENST00000311351 PDE6HQ13956 83 aa11.55□□□□□ -0.56
LSM1-201ENST00000311351 MRPL32Q9BYC8 188 aaKnown RBP11.55□□□□□ -0.56
LSM1-201ENST00000311351 WFDC1Q9HC57 220 aa11.55□□□□□ -0.56
LSM1-201ENST00000311351 IFNA5P01569 189 aa11.54□□□□□ -0.56
LSM1-201ENST00000311351 OR10J4P0C629 311 aa11.54□□□□□ -0.56
LSM1-201ENST00000311351 LEPP41159 167 aa11.54□□□□□ -0.56
LSM1-201ENST00000311351 FFAR4Q5NUL3 377 aa11.54□□□□□ -0.56
LSM1-201ENST00000311351 PHYHIPLQ96FC7 376 aa11.54□□□□□ -0.56
LSM1-201ENST00000311351 C16orf74Q96GX8 76 aa11.54□□□□□ -0.56
LSM1-201ENST00000311351 ODF3Q96PU9 254 aa11.54□□□□□ -0.56
LSM1-201ENST00000311351 OR51M1Q9H341 326 aa11.54□□□□□ -0.56
LSM1-201ENST00000311351 FUT9Q9Y231 359 aa11.54□□□□□ -0.56
LSM1-201ENST00000311351 IGKV2-40A0A087WW87 121 aaPredicted RBP11.53□□□□□ -0.56
LSM1-201ENST00000311351 H7BYZ3 331 aa11.53□□□□□ -0.56
LSM1-201ENST00000311351 EIF3GO75821 320 aaKnown RBP eCLIP11.53□□□□□ -0.56
LSM1-201ENST00000311351 IGKV2D-40P01614 121 aaPredicted RBP11.53□□□□□ -0.56
LSM1-201ENST00000311351 ICAM4Q14773 271 aa11.53□□□□□ -0.56
LSM1-201ENST00000311351 FAM122CQ6P4D5 195 aa11.53□□□□□ -0.56
LSM1-201ENST00000311351 TMEM88Q6PEY1 159 aa11.53□□□□□ -0.56
LSM1-201ENST00000311351 RNASE8Q8TDE3 154 aaKnown RBP11.53□□□□□ -0.56
LSM1-201ENST00000311351 TMEM263Q8WUH6 116 aaKnown RBP11.53□□□□□ -0.56
LSM1-201ENST00000311351 FXYD5Q96DB9 178 aa11.53□□□□□ -0.56
LSM1-201ENST00000311351 C20orf144Q9BQM9 153 aa11.53□□□□□ -0.56
LSM1-201ENST00000311351 PAXXQ9BUH6 204 aa11.53□□□□□ -0.56
LSM1-201ENST00000311351 AAMDCQ9H7C9 122 aa11.53□□□□□ -0.56
LSM1-201ENST00000311351 PRELID1Q9Y255 219 aa11.53□□□□□ -0.56
LSM1-201ENST00000311351 TRAV12-3A0A0B4J271 114 aa11.52□□□□□ -0.57
LSM1-201ENST00000311351 OR7C2O60412 319 aa11.52□□□□□ -0.57
LSM1-201ENST00000311351 NBEAP1P0C6P0 100 aa11.52□□□□□ -0.57
LSM1-201ENST00000311351 P0DMU3 169 aa11.52□□□□□ -0.57
LSM1-201ENST00000311351 FAM231AP0DMU4 169 aa11.52□□□□□ -0.57
LSM1-201ENST00000311351 FAM231CP0DMU5 169 aa11.52□□□□□ -0.57
LSM1-201ENST00000311351 SCGB1C1Q8TD33 95 aa11.52□□□□□ -0.57
LSM1-201ENST00000311351 RNF141Q8WVD5 230 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 72.5 ms