RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 SCTP09683 121 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 FUSP35637 526 aaKnown RBP eCLIP4.32□□□□□ -1.72
SCN1A-201ENST00000303395 FLVCR1-AS1Q8TAF5 88 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 A0A1W2PQF6 199 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 ZCCHC24Q8N2G6 241 aaKnown RBP4.32□□□□□ -1.72
SCN1A-201ENST00000303395 SPSB2Q99619 263 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 LIME1Q9H400 295 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 TPTE2P1Q5T6R2 138 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 Q6P435 159 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 ZNF493Q6ZR52 646 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 LINC00305Q7Z4B0 112 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 IGKV1-9A0A0C4DH69 117 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 CDKN1AP38936 164 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 RHOHQ15669 191 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 WBP1Q96G27 269 aa4.32□□□□□ -1.72
SCN1A-201ENST00000303395 VEGFBP49765 207 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 SLAQ13239 276 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 PCOLCEQ15113 449 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 DMRTC1Q5HYR2 192 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 A0A0U1RRA0 63 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 K7EM74 188 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 Q6Q795 121 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 C15orf53Q8NAA6 179 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 OCC1Q8TAD7 63 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 FAM60AQ9NP50 221 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 COL4A1P02462 1669 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 C2CD3Q4AC94 2353 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 A0A1W2PPE3 182 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 H3BUT2 72 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 M0R1W7 72 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 VCYO14598 125 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 EVI2AP22794 236 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 C1orf122Q6ZSJ8 110 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 Q8N8P6 123 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 NABP1Q96AH0 204 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 TMEM14BQ9NUH8 114 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 CRIM1Q9NZV1 1036 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 TRAV26-1A0A087WT03 109 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 TRAV5A0A0B4J249 113 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 A0A1W2PPM0 123 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 NUP35Q8NFH5 326 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 CT55Q8WUE5 264 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 PROP1O75360 226 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 ZIC4Q8N9L1 334 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 CSTL1Q9H114 145 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 NUP210Q8TEM1 1887 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-201ENST00000303395 KIF26AQ9ULI4 1882 aaPredicted RBP4.31□□□□□ -1.72
SCN1A-201ENST00000303395 MYMXA0A1B0GTQ4 84 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 MYF5P13349 255 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 FHL1Q13642 323 aa4.31□□□□□ -1.72
SCN1A-201ENST00000303395 PNRC2Q9NPJ4 139 aaKnown RBP4.31□□□□□ -1.72
SCN1A-201ENST00000303395 IGHV3-72A0A0B4J1Y9 119 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 IGLC7A0M8Q6 106 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 CCL13Q99616 98 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 Q9H3A6 140 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 DPM3Q9P2X0 92 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 FAM240AA0A1B0GVK7 77 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 A0A1W2PR77 199 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 COX6A1P12074 109 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 AZU1P20160 251 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 NPC2P61916 151 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 KIR3DS1Q14943 382 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 ATOX1O00244 68 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 APOC4P55056 127 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 Q86TA4 180 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 TEN1Q86WV5 123 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 USMG5Q96IX5 58 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 C7orf69Q9H7B7 122 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 C21orf62Q9NYP8 219 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 ZNF319Q9P2F9 582 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 IGHV3-64A0A075B6Q5 118 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 HAMPP81172 84 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 TPRX1Q8N7U7 411 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 RNF125Q96EQ8 232 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 TRGV1A0A0A0MS02 117 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 A6NNC1 897 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 MOSP00540 346 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 KLF14Q8TD94 323 aaPredicted RBP4.3□□□□□ -1.72
SCN1A-201ENST00000303395 NPIPB3Q92617 1050 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 FAM104BQ5XKR9 115 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 C11orf44Q8N8P7 122 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 RCHY1Q96PM5 261 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 UCN2Q96RP3 112 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 TTTY12Q9BZ98 90 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 V9GYV3 84 aa4.3□□□□□ -1.72
SCN1A-201ENST00000303395 MYO9AB2RTY4 2548 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 IGHV3-66A0A0C4DH42 116 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 GAGE12HA6NDE8 117 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 J3KT08 172 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 HOXB4P17483 251 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-201ENST00000303395 FOXA3P55318 350 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-201ENST00000303395 KRTAP27-1Q3LI81 207 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 SNRPCP09234 159 aaKnown RBP4.29□□□□□ -1.72
SCN1A-201ENST00000303395 TMEM52Q8NDY8 209 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 LSM4Q9Y4Z0 139 aaKnown RBP4.29□□□□□ -1.72
SCN1A-201ENST00000303395 EXPH5Q8NEV8 1989 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 FAM223BA6NKX1 122 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 F8VRH5 84 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 H0Y8X5 98 aa4.29□□□□□ -1.72
SCN1A-201ENST00000303395 H0YJW9 148 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms