RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 ATP6V0BQ99437 205 aa8.41□□□□□ -1.06
CLIP1-201ENST00000302528 PSME4Q14997 1843 aa8.41□□□□□ -1.06
CLIP1-201ENST00000302528 MBD3L4A6NDZ8 208 aaPredicted RBP8.41□□□□□ -1.06
CLIP1-201ENST00000302528 MBD3L3A6NE82 208 aaPredicted RBP8.41□□□□□ -1.06
CLIP1-201ENST00000302528 MBD3L5A6NJ08 208 aaPredicted RBP8.41□□□□□ -1.06
CLIP1-201ENST00000302528 ETDBQ3ZM63 59 aa8.41□□□□□ -1.06
CLIP1-201ENST00000302528 Q8N8P6 123 aa8.41□□□□□ -1.06
CLIP1-201ENST00000302528 C8orf31Q8N9H6 132 aa8.41□□□□□ -1.06
CLIP1-201ENST00000302528 MBD3L2Q8NHZ7 208 aaPredicted RBP8.41□□□□□ -1.06
CLIP1-201ENST00000302528 FAM110DQ8TAY7 271 aaPredicted RBP8.41□□□□□ -1.06
CLIP1-201ENST00000302528 IGKV2D-24A0A075B6R9 120 aa8.41□□□□□ -1.06
CLIP1-201ENST00000302528 IGKV1OR2-108A0A075B7D4 117 aa8.41□□□□□ -1.06
CLIP1-201ENST00000302528 CLPSL2Q6UWE3 100 aa8.41□□□□□ -1.06
CLIP1-201ENST00000302528 SHANK2-AS3Q9BTD1 123 aa8.41□□□□□ -1.06
CLIP1-201ENST00000302528 IGKV1-12A0A0C4DH73 117 aa8.41□□□□□ -1.06
CLIP1-201ENST00000302528 SDHAF1A6NFY7 115 aa8.41□□□□□ -1.06
CLIP1-201ENST00000302528 IGKV1D-12P01611 117 aa8.41□□□□□ -1.06
CLIP1-201ENST00000302528 SAA4P35542 130 aa8.41□□□□□ -1.06
CLIP1-201ENST00000302528 TMEM14EPQ6UXP3 125 aa8.41□□□□□ -1.06
CLIP1-201ENST00000302528 CACNA1DQ01668 2161 aa8.4□□□□□ -1.06
CLIP1-201ENST00000302528 IGHV1OR15-1A0A075B7D0 117 aa8.4□□□□□ -1.06
CLIP1-201ENST00000302528 F8W1H4 67 aa8.4□□□□□ -1.06
CLIP1-201ENST00000302528 PDE6HQ13956 83 aa8.4□□□□□ -1.06
CLIP1-201ENST00000302528 PAQR4Q8N4S7 273 aaPredicted RBP8.4□□□□□ -1.06
CLIP1-201ENST00000302528 NCOR1O75376 2440 aa8.4□□□□□ -1.06
CLIP1-201ENST00000302528 PFN1P07737 140 aaKnown RBP8.4□□□□□ -1.06
CLIP1-201ENST00000302528 IGF2BP2-AS1Q96M15 143 aa8.4□□□□□ -1.06
CLIP1-201ENST00000302528 RLFQ13129 1914 aa8.4□□□□□ -1.06
CLIP1-201ENST00000302528 PINLYPA6NC86 204 aa8.4□□□□□ -1.06
CLIP1-201ENST00000302528 A8MWP6 167 aa8.4□□□□□ -1.06
CLIP1-201ENST00000302528 NDUFB1O75438 58 aa8.4□□□□□ -1.06
CLIP1-201ENST00000302528 NDUFC2O95298 119 aa8.4□□□□□ -1.06
CLIP1-201ENST00000302528 FUSP35637 526 aaKnown RBP eCLIP8.4□□□□□ -1.06
CLIP1-201ENST00000302528 FAM104BQ5XKR9 115 aa8.4□□□□□ -1.06
CLIP1-201ENST00000302528 ZMAT4Q9H898 229 aa8.4□□□□□ -1.06
CLIP1-201ENST00000302528 PRO1854Q9UHT4 67 aa8.4□□□□□ -1.06
CLIP1-201ENST00000302528 TRIOBPQ9H2D6 2365 aa8.4□□□□□ -1.07
CLIP1-201ENST00000302528 C9orf118A6NHY6 69 aa8.4□□□□□ -1.07
CLIP1-201ENST00000302528 SPTBP11277 2137 aa8.39□□□□□ -1.07
CLIP1-201ENST00000302528 LOC285556D6RIA3 1793 aa8.39□□□□□ -1.07
CLIP1-201ENST00000302528 OR11H6Q8NGC7 330 aa8.39□□□□□ -1.07
CLIP1-201ENST00000302528 ABCA1O95477 2261 aa8.39□□□□□ -1.07
CLIP1-201ENST00000302528 ARHGEF17Q96PE2 2063 aaPredicted RBP8.39□□□□□ -1.07
CLIP1-201ENST00000302528 MP68P56378 58 aa8.39□□□□□ -1.07
CLIP1-201ENST00000302528 NMSQ5H8A3 153 aa8.39□□□□□ -1.07
CLIP1-201ENST00000302528 ZNF664Q8N3J9 261 aa8.39□□□□□ -1.07
CLIP1-201ENST00000302528 ABCA4P78363 2273 aa8.39□□□□□ -1.07
CLIP1-201ENST00000302528 IGHV4-28A0A0C4DH34 117 aa8.39□□□□□ -1.07
CLIP1-201ENST00000302528 IGKV1-39P01597 117 aa8.39□□□□□ -1.07
CLIP1-201ENST00000302528 IGKV1D-39P04432 117 aa8.39□□□□□ -1.07
CLIP1-201ENST00000302528 HERVK_113P63121 156 aa8.39□□□□□ -1.07
CLIP1-201ENST00000302528 GAFA1Q96PS6 74 aa8.39□□□□□ -1.07
CLIP1-201ENST00000302528 BPESC1Q9GZL8 116 aa8.39□□□□□ -1.07
CLIP1-201ENST00000302528 PRSS46E5RG02 174 aa8.39□□□□□ -1.07
CLIP1-201ENST00000302528 RNF223E7ERA6 249 aa8.39□□□□□ -1.07
CLIP1-201ENST00000302528 IGHG2P01859 326 aa8.39□□□□□ -1.07
CLIP1-201ENST00000302528 PRSS57Q6UWY2 283 aa8.39□□□□□ -1.07
CLIP1-201ENST00000302528 TMEM75Q8N9X5 138 aa8.39□□□□□ -1.07
CLIP1-201ENST00000302528 C14orf132Q9NPU4 83 aa8.39□□□□□ -1.07
CLIP1-201ENST00000302528 ETDCA0A1B0GVM5 59 aa8.38□□□□□ -1.07
CLIP1-201ENST00000302528 CRYGSP22914 178 aa8.38□□□□□ -1.07
CLIP1-201ENST00000302528 PYY3Q5JQD4 70 aa8.38□□□□□ -1.07
CLIP1-201ENST00000302528 C8orf49Q96NF6 230 aa8.38□□□□□ -1.07
CLIP1-201ENST00000302528 HS3ST6Q96QI5 342 aa8.38□□□□□ -1.07
CLIP1-201ENST00000302528 TIMM17AQ99595 171 aa8.38□□□□□ -1.07
CLIP1-201ENST00000302528 SPANXCQ9NY87 97 aa8.38□□□□□ -1.07
CLIP1-201ENST00000302528 SEC61GP60059 68 aa8.38□□□□□ -1.07
CLIP1-201ENST00000302528 SCN10AQ9Y5Y9 1956 aa8.38□□□□□ -1.07
CLIP1-201ENST00000302528 CEP290O15078 2479 aa8.38□□□□□ -1.07
CLIP1-201ENST00000302528 A0A087WV48 116 aa8.38□□□□□ -1.07
CLIP1-201ENST00000302528 CFHR1Q03591 330 aa8.38□□□□□ -1.07
CLIP1-201ENST00000302528 LINC00479Q96M42 142 aa8.38□□□□□ -1.07
CLIP1-201ENST00000302528 RUSC1-AS1Q66K80 236 aa8.38□□□□□ -1.07
CLIP1-201ENST00000302528 CFHR4Q92496 578 aa8.38□□□□□ -1.07
CLIP1-201ENST00000302528 PKIGQ9Y2B9 76 aa8.38□□□□□ -1.07
CLIP1-201ENST00000302528 PATJQ8NI35 1801 aa8.38□□□□□ -1.07
CLIP1-201ENST00000302528 OTOFQ9HC10 1997 aa8.38□□□□□ -1.07
CLIP1-201ENST00000302528 IGHV4-4A0A075B6R2 117 aa8.37□□□□□ -1.07
CLIP1-201ENST00000302528 C15orf53Q8NAA6 179 aa8.37□□□□□ -1.07
CLIP1-201ENST00000302528 SRSF8Q9BRL6 282 aaKnown RBP8.37□□□□□ -1.07
CLIP1-201ENST00000302528 ORMDL1Q9P0S3 153 aa8.37□□□□□ -1.07
CLIP1-201ENST00000302528 ZDBF2Q9HCK1 2354 aa8.37□□□□□ -1.07
CLIP1-201ENST00000302528 GAGE12HA6NDE8 117 aa8.37□□□□□ -1.07
CLIP1-201ENST00000302528 LINC00473A8K010 186 aa8.37□□□□□ -1.07
CLIP1-201ENST00000302528 CYTL1Q9NRR1 136 aa8.37□□□□□ -1.07
CLIP1-201ENST00000302528 IGLV3-12A0A075B6K2 115 aa8.37□□□□□ -1.07
CLIP1-201ENST00000302528 TRAV26-2A0A0B4J265 109 aa8.37□□□□□ -1.07
CLIP1-201ENST00000302528 TRAV12-2A0A075B6T6 113 aa8.37□□□□□ -1.07
CLIP1-201ENST00000302528 IGLV3-32A0A0A0MS00 114 aa8.37□□□□□ -1.07
CLIP1-201ENST00000302528 MLANAQ16655 118 aa8.37□□□□□ -1.07
CLIP1-201ENST00000302528 CACNA1GO43497 2377 aa8.37□□□□□ -1.07
CLIP1-201ENST00000302528 SBF1O95248 1867 aa8.37□□□□□ -1.07
CLIP1-201ENST00000302528 F6UB75 175 aa8.37□□□□□ -1.07
CLIP1-201ENST00000302528 NTN3O00634 580 aaPredicted RBP8.37□□□□□ -1.07
CLIP1-201ENST00000302528 ATP6V0E1O15342 81 aa8.37□□□□□ -1.07
CLIP1-201ENST00000302528 NDUFS6O75380 124 aaKnown RBP8.37□□□□□ -1.07
CLIP1-201ENST00000302528 RPL18AQ02543 176 aaKnown RBP8.37□□□□□ -1.07
CLIP1-201ENST00000302528 Q9HAA7 133 aa8.37□□□□□ -1.07
CLIP1-201ENST00000302528 RALGAPA1Q6GYQ0 2036 aa8.36□□□□□ -1.07
CLIP1-201ENST00000302528 IGHV1-24A0A0C4DH33 117 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms