RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 CYTL1Q9NRR1 136 aa9.69□□□□□ -0.86
VPS28-201ENST00000292510 hCG_2014768A0A024R1R8 64 aa9.68□□□□□ -0.86
VPS28-201ENST00000292510 IGHV3OR16-12A0A075B7B8 117 aa9.68□□□□□ -0.86
VPS28-201ENST00000292510 BORCS7-ASMTA0A0B4J1R7 106 aa9.68□□□□□ -0.86
VPS28-201ENST00000292510 IGHV4-28A0A0C4DH34 117 aa9.68□□□□□ -0.86
VPS28-201ENST00000292510 UBE2L3P68036 154 aaKnown RBP9.68□□□□□ -0.86
VPS28-201ENST00000292510 PDE6HQ13956 83 aa9.68□□□□□ -0.86
VPS28-201ENST00000292510 KHDC3LQ587J8 217 aa9.68□□□□□ -0.86
VPS28-201ENST00000292510 RPP25LQ8N5L8 163 aaKnown RBP9.68□□□□□ -0.86
VPS28-201ENST00000292510 Q8NAQ8 132 aa9.68□□□□□ -0.86
VPS28-201ENST00000292510 OR2G3Q8NGZ4 309 aa9.68□□□□□ -0.86
VPS28-201ENST00000292510 IL17DQ8TAD2 202 aa9.68□□□□□ -0.86
VPS28-201ENST00000292510 ST6GAL2Q96JF0 529 aa9.68□□□□□ -0.86
VPS28-201ENST00000292510 A0A1W2PPV4 95 aa9.67□□□□□ -0.86
VPS28-201ENST00000292510 BOLA2-SMG1P6H3BVE0 249 aa9.67□□□□□ -0.86
VPS28-201ENST00000292510 RBMY1A1P0DJD3 496 aaKnown RBP9.67□□□□□ -0.86
VPS28-201ENST00000292510 RBMY1CP0DJD4 496 aa9.67□□□□□ -0.86
VPS28-201ENST00000292510 TAS2R45P59539 299 aa9.67□□□□□ -0.86
VPS28-201ENST00000292510 ICAM4Q14773 271 aa9.67□□□□□ -0.86
VPS28-201ENST00000292510 RBMY1FQ15415 496 aaKnown RBP9.67□□□□□ -0.86
VPS28-201ENST00000292510 CASC10Q5T4H9 136 aa9.67□□□□□ -0.86
VPS28-201ENST00000292510 BAP18Q8IXM2 172 aa9.67□□□□□ -0.86
VPS28-201ENST00000292510 C1orf158Q8N1D5 194 aa9.67□□□□□ -0.86
VPS28-201ENST00000292510 KCNRGQ8N5I3 272 aa9.67□□□□□ -0.86
VPS28-201ENST00000292510 PLECQ15149 4684 aaKnown RBP9.67□□□□□ -0.86
VPS28-201ENST00000292510 TRAV12-2A0A075B6T6 113 aa9.66□□□□□ -0.86
VPS28-201ENST00000292510 HMSDA8MTL9 139 aa9.66□□□□□ -0.86
VPS28-201ENST00000292510 TAAR5O14804 337 aa9.66□□□□□ -0.86
VPS28-201ENST00000292510 CRXO43186 299 aaPredicted RBP9.66□□□□□ -0.86
VPS28-201ENST00000292510 CDC34P49427 236 aaPredicted RBP9.66□□□□□ -0.86
VPS28-201ENST00000292510 SERF2P84101 59 aa9.66□□□□□ -0.86
VPS28-201ENST00000292510 ZNF345Q14585 488 aa9.66□□□□□ -0.86
VPS28-201ENST00000292510 ZNF705AQ6ZN79 300 aaPredicted RBP9.66□□□□□ -0.86
VPS28-201ENST00000292510 OR10J6PQ8NGY7 276 aa9.66□□□□□ -0.86
VPS28-201ENST00000292510 GNPNAT1Q96EK6 184 aaPredicted RBP9.66□□□□□ -0.86
VPS28-201ENST00000292510 IGF2BP2-AS1Q96M15 143 aa9.66□□□□□ -0.86
VPS28-201ENST00000292510 C11orf68Q9H3H3 251 aaKnown RBP9.66□□□□□ -0.86
VPS28-201ENST00000292510 AAMDCQ9H7C9 122 aa9.66□□□□□ -0.86
VPS28-201ENST00000292510 PPP1R14DQ9NXH3 145 aa9.66□□□□□ -0.86
VPS28-201ENST00000292510 TENM2Q9NT68 2774 aa9.65□□□□□ -0.86
VPS28-201ENST00000292510 PFDN1O60925 122 aa9.65□□□□□ -0.86
VPS28-201ENST00000292510 JTBO76095 146 aa9.65□□□□□ -0.86
VPS28-201ENST00000292510 MIFP14174 115 aa9.65□□□□□ -0.86
VPS28-201ENST00000292510 RANP62826 216 aaKnown RBP9.65□□□□□ -0.86
VPS28-201ENST00000292510 ERCC8Q13216 396 aa9.65□□□□□ -0.86
VPS28-201ENST00000292510 PMS2P11Q13670 270 aa9.65□□□□□ -0.86
VPS28-201ENST00000292510 KIR3DS1Q14943 382 aa9.65□□□□□ -0.86
VPS28-201ENST00000292510 SSX7Q7RTT5 188 aa9.65□□□□□ -0.86
VPS28-201ENST00000292510 RAB24Q969Q5 203 aa9.65□□□□□ -0.86
VPS28-201ENST00000292510 MRPL53Q96EL3 112 aaKnown RBP9.65□□□□□ -0.86
VPS28-201ENST00000292510 ARPC5LQ9BPX5 153 aa9.65□□□□□ -0.86
VPS28-201ENST00000292510 PRELID1Q9Y255 219 aa9.65□□□□□ -0.86
VPS28-201ENST00000292510 IGKV2-40A0A087WW87 121 aaPredicted RBP9.64□□□□□ -0.87
VPS28-201ENST00000292510 NPIPB6E9PJ23 425 aa9.64□□□□□ -0.87
VPS28-201ENST00000292510 IGKV2D-40P01614 121 aaPredicted RBP9.64□□□□□ -0.87
VPS28-201ENST00000292510 MBP02144 154 aa9.64□□□□□ -0.87
VPS28-201ENST00000292510 STAG3L2P0CL84 134 aa9.64□□□□□ -0.87
VPS28-201ENST00000292510 STAG3L3P0CL85 134 aa9.64□□□□□ -0.87
VPS28-201ENST00000292510 ARL14EPLP0DKL9 152 aa9.64□□□□□ -0.87
VPS28-201ENST00000292510 CT45A10P0DMU9 189 aa9.64□□□□□ -0.87
VPS28-201ENST00000292510 NANOS2P60321 138 aaKnown RBP9.64□□□□□ -0.87
VPS28-201ENST00000292510 PQLC2Q6ZP29 291 aa9.64□□□□□ -0.87
VPS28-201ENST00000292510 Q9H3A6 140 aa9.64□□□□□ -0.87
VPS28-201ENST00000292510 GOLT1BQ9Y3E0 138 aa9.64□□□□□ -0.87
VPS28-201ENST00000292510 DYNC2H1Q8NCM8 4307 aaKnown RBP9.64□□□□□ -0.87
VPS28-201ENST00000292510 J3KRW8 73 aa9.63□□□□□ -0.87
VPS28-201ENST00000292510 INSP01308 110 aa9.63□□□□□ -0.87
VPS28-201ENST00000292510 AMBPP02760 352 aa9.63□□□□□ -0.87
VPS28-201ENST00000292510 PRM2P04554 102 aa9.63□□□□□ -0.87
VPS28-201ENST00000292510 ZNF726P1Q15940 193 aa9.63□□□□□ -0.87
VPS28-201ENST00000292510 TCTE3Q8IZS6 198 aa9.63□□□□□ -0.87
VPS28-201ENST00000292510 TMEM208Q9BTX3 173 aa9.63□□□□□ -0.87
VPS28-201ENST00000292510 A0A0D9SG52 128 aa9.62□□□□□ -0.87
VPS28-201ENST00000292510 CXorf65A6NEN9 183 aa9.62□□□□□ -0.87
VPS28-201ENST00000292510 BCL2L11O43521 198 aa9.62□□□□□ -0.87
VPS28-201ENST00000292510 CDKN1BP46527 198 aa9.62□□□□□ -0.87
VPS28-201ENST00000292510 TMUB2Q71RG4 321 aa9.62□□□□□ -0.87
VPS28-201ENST00000292510 C11orf45Q8TAV5 145 aa9.62□□□□□ -0.87
VPS28-201ENST00000292510 HYLS1Q96M11 299 aa9.62□□□□□ -0.87
VPS28-201ENST00000292510 NEU1Q99519 415 aa9.62□□□□□ -0.87
VPS28-201ENST00000292510 VGLL1Q99990 258 aa9.62□□□□□ -0.87
VPS28-201ENST00000292510 ZNF471Q9BX82 626 aaPredicted RBP9.62□□□□□ -0.87
VPS28-201ENST00000292510 ACTR3CQ9C0K3 210 aaPredicted RBP9.62□□□□□ -0.87
VPS28-201ENST00000292510 AGPAT4-IT1Q9H0P7 198 aa9.62□□□□□ -0.87
VPS28-201ENST00000292510 CELA1Q9UNI1 258 aa9.62□□□□□ -0.87
VPS28-201ENST00000292510 RYR3Q15413 4870 aa9.62□□□□□ -0.87
VPS28-201ENST00000292510 KANTRA0A1W2PQU2 76 aa9.61□□□□□ -0.87
VPS28-201ENST00000292510 ZNF705GA8MUZ8 300 aaPredicted RBP9.61□□□□□ -0.87
VPS28-201ENST00000292510 GCHFRP30047 84 aa9.61□□□□□ -0.87
VPS28-201ENST00000292510 EMP1P54849 157 aa9.61□□□□□ -0.87
VPS28-201ENST00000292510 CD300CQ08708 224 aa9.61□□□□□ -0.87
VPS28-201ENST00000292510 AKR1C8PQ5T2L2 129 aa9.61□□□□□ -0.87
VPS28-201ENST00000292510 LYPD1Q8N2G4 141 aa9.61□□□□□ -0.87
VPS28-201ENST00000292510 PLA2G2EQ9NZK7 142 aa9.61□□□□□ -0.87
VPS28-201ENST00000292510 SACSQ9NZJ4 4579 aa9.61□□□□□ -0.87
VPS28-201ENST00000292510 LOC102723971A0A1B0GUV8 181 aa9.6□□□□□ -0.87
VPS28-201ENST00000292510 PGPA6NDG6 321 aa9.6□□□□□ -0.87
VPS28-201ENST00000292510 SMIM9A6NGZ8 99 aa9.6□□□□□ -0.87
VPS28-201ENST00000292510 HBE1P02100 147 aa9.6□□□□□ -0.87
VPS28-201ENST00000292510 RRN3P1Q2M238 152 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms