RNA–Protein interactions for RNA: ENST00000269318.9

CCDC40-201, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2 BASIC

Gene CCDC40, Length 1,970 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-201ENST00000269318 IGHV3-11P01762 117 aa12.77□□□□□ -0.37
CCDC40-201ENST00000269318 MRPL54Q6P161 138 aaKnown RBP12.77□□□□□ -0.37
CCDC40-201ENST00000269318 LCNL1Q6ZST4 164 aa12.77□□□□□ -0.37
CCDC40-201ENST00000269318 ASCL2Q99929 193 aa12.77□□□□□ -0.37
CCDC40-201ENST00000269318 PRDM13Q9H4Q3 707 aa12.77□□□□□ -0.37
CCDC40-201ENST00000269318 IGHV3OR16-13A0A075B7E8 117 aa12.76□□□□□ -0.37
CCDC40-201ENST00000269318 IGHV3-74A0A0B4J1X5 117 aa12.76□□□□□ -0.37
CCDC40-201ENST00000269318 A0A0G2JLM5 398 aa12.76□□□□□ -0.37
CCDC40-201ENST00000269318 HIGD1CA8MV81 97 aa12.76□□□□□ -0.37
CCDC40-201ENST00000269318 NDUFA4O00483 81 aa12.76□□□□□ -0.37
CCDC40-201ENST00000269318 MT-ND6P03923 174 aa12.76□□□□□ -0.37
CCDC40-201ENST00000269318 HLA-DMBP28068 263 aa12.76□□□□□ -0.37
CCDC40-201ENST00000269318 IGFL4Q6B9Z1 124 aa12.76□□□□□ -0.37
CCDC40-201ENST00000269318 UNQ9165/PRO28630Q6UXU0 137 aa12.76□□□□□ -0.37
CCDC40-201ENST00000269318 GBGT1Q8N5D6 347 aa12.76□□□□□ -0.37
CCDC40-201ENST00000269318 WIPF2Q8TF74 440 aaPredicted RBP12.76□□□□□ -0.37
CCDC40-201ENST00000269318 DAZAP1Q96EP5 407 aaKnown RBP12.76□□□□□ -0.37
CCDC40-201ENST00000269318 IGHV3-49A0A0A0MS15 119 aa12.76□□□□□ -0.37
CCDC40-201ENST00000269318 RASL11AQ6T310 242 aa12.76□□□□□ -0.37
CCDC40-201ENST00000269318 OR4X2Q8NGF9 303 aa12.76□□□□□ -0.37
CCDC40-201ENST00000269318 DOPEY2Q9Y3R5 2298 aa12.75□□□□□ -0.37
CCDC40-201ENST00000269318 IGKV2-40A0A087WW87 121 aaPredicted RBP12.75□□□□□ -0.37
CCDC40-201ENST00000269318 A8MWL6 223 aa12.75□□□□□ -0.37
CCDC40-201ENST00000269318 IGKV2D-40P01614 121 aaPredicted RBP12.75□□□□□ -0.37
CCDC40-201ENST00000269318 PSMB8P28062 276 aa12.75□□□□□ -0.37
CCDC40-201ENST00000269318 S100A2P29034 98 aa12.75□□□□□ -0.37
CCDC40-201ENST00000269318 WFDC11Q8NEX6 87 aa12.75□□□□□ -0.37
CCDC40-201ENST00000269318 OR4B1Q8NGF8 309 aa12.75□□□□□ -0.37
CCDC40-201ENST00000269318 GTSF1Q8WW33 167 aa12.75□□□□□ -0.37
CCDC40-201ENST00000269318 HIST1H2BLQ99880 126 aa12.75□□□□□ -0.37
CCDC40-201ENST00000269318 GFRA4Q9GZZ7 299 aa12.75□□□□□ -0.37
CCDC40-201ENST00000269318 CRIP1P50238 77 aa12.74□□□□□ -0.37
CCDC40-201ENST00000269318 LCN12Q6JVE5 192 aa12.74□□□□□ -0.37
CCDC40-201ENST00000269318 COX8CQ7Z4L0 72 aa12.74□□□□□ -0.37
CCDC40-201ENST00000269318 SLC50A1Q9BRV3 221 aa12.74□□□□□ -0.37
CCDC40-201ENST00000269318 CREBBPQ92793 2442 aa12.74□□□□□ -0.37
CCDC40-201ENST00000269318 ZNF469Q96JG9 3925 aaPredicted RBP12.74□□□□□ -0.37
CCDC40-201ENST00000269318 FBLL1A6NHQ2 334 aaKnown RBP12.74□□□□□ -0.37
CCDC40-201ENST00000269318 ZNF705FA8MVS1 300 aaPredicted RBP12.74□□□□□ -0.37
CCDC40-201ENST00000269318 TCF24Q7RTU0 167 aa12.74□□□□□ -0.37
CCDC40-201ENST00000269318 GLMPQ8WWB7 406 aa12.74□□□□□ -0.37
CCDC40-201ENST00000269318 C8orf49Q96NF6 230 aa12.74□□□□□ -0.37
CCDC40-201ENST00000269318 A0A1B0GXF2 115 aa12.73□□□□□ -0.37
CCDC40-201ENST00000269318 FAM231BA6NCW3 169 aa12.73□□□□□ -0.37
CCDC40-201ENST00000269318 HOXA3O43365 443 aaPredicted RBP12.73□□□□□ -0.37
CCDC40-201ENST00000269318 HLA-DQA1P01909 254 aa12.73□□□□□ -0.37
CCDC40-201ENST00000269318 FABP4P15090 132 aa12.73□□□□□ -0.37
CCDC40-201ENST00000269318 FAM209BQ5JX69 171 aa12.73□□□□□ -0.37
CCDC40-201ENST00000269318 OR10D4PQ8NGN7 298 aa12.73□□□□□ -0.37
CCDC40-201ENST00000269318 TRAV8-2A0A0B4J237 113 aa12.72□□□□□ -0.37
CCDC40-201ENST00000269318 TMEM89A2RUT3 159 aa12.72□□□□□ -0.37
CCDC40-201ENST00000269318 GDF5OSQ5U4N7 250 aa12.72□□□□□ -0.37
CCDC40-201ENST00000269318 ATP5L2Q7Z4Y8 100 aa12.72□□□□□ -0.37
CCDC40-201ENST00000269318 VGLL1Q99990 258 aa12.72□□□□□ -0.37
CCDC40-201ENST00000269318 A0A1B0GUS0 222 aa12.72□□□□□ -0.37
CCDC40-201ENST00000269318 GRIFINA4D1Z8 144 aa12.72□□□□□ -0.37
CCDC40-201ENST00000269318 SMAD7O15105 426 aaKnown RBP12.72□□□□□ -0.37
CCDC40-201ENST00000269318 AMBPP02760 352 aa12.72□□□□□ -0.37
CCDC40-201ENST00000269318 C10orf99Q6UWK7 81 aa12.72□□□□□ -0.37
CCDC40-201ENST00000269318 C8orf86Q6ZUL3 223 aa12.72□□□□□ -0.37
CCDC40-201ENST00000269318 RNF182Q8N6D2 247 aa12.72□□□□□ -0.37
CCDC40-201ENST00000269318 OR2D3Q8NGH3 330 aa12.72□□□□□ -0.37
CCDC40-201ENST00000269318 PRR25Q96S07 402 aa12.72□□□□□ -0.37
CCDC40-201ENST00000269318 ZNF702PQ9H963 129 aa12.72□□□□□ -0.37
CCDC40-201ENST00000269318 TP53TG3Q9ULZ0 132 aa12.72□□□□□ -0.37
CCDC40-201ENST00000269318 MXRA5Q9NR99 2828 aa12.72□□□□□ -0.37
CCDC40-201ENST00000269318 PRAC2D3DTV9 90 aa12.71□□□□□ -0.37
CCDC40-201ENST00000269318 RAB4BP61018 213 aa12.71□□□□□ -0.37
CCDC40-201ENST00000269318 SAPCD1Q5SSQ6 148 aa12.71□□□□□ -0.37
CCDC40-201ENST00000269318 NPFFR1Q9GZQ6 430 aa12.71□□□□□ -0.37
CCDC40-201ENST00000269318 TEX15Q9BXT5 2789 aa12.71□□□□□ -0.37
CCDC40-201ENST00000269318 FOXA3P55318 350 aaPredicted RBP12.7□□□□□ -0.38
CCDC40-201ENST00000269318 PYY3Q5JQD4 70 aa12.7□□□□□ -0.38
CCDC40-201ENST00000269318 RBPMS2Q6ZRY4 209 aaKnown RBP12.7□□□□□ -0.38
CCDC40-201ENST00000269318 TMEM256Q8N2U0 113 aa12.7□□□□□ -0.38
CCDC40-201ENST00000269318 PACRGQ96M98 296 aaPredicted RBP12.7□□□□□ -0.38
CCDC40-201ENST00000269318 RBAKDNA6NC62 111 aa12.7□□□□□ -0.38
CCDC40-201ENST00000269318 CRISP2P16562 243 aa12.7□□□□□ -0.38
CCDC40-201ENST00000269318 Q8TAT8 98 aa12.7□□□□□ -0.38
CCDC40-201ENST00000269318 MRPL53Q96EL3 112 aaKnown RBP12.7□□□□□ -0.38
CCDC40-201ENST00000269318 PEF1Q9UBV8 284 aaKnown RBP12.7□□□□□ -0.38
CCDC40-201ENST00000269318 CT45A10P0DMU9 189 aa12.69□□□□□ -0.38
CCDC40-201ENST00000269318 GZMBP10144 247 aa12.69□□□□□ -0.38
CCDC40-201ENST00000269318 LINC00310P59036 64 aa12.69□□□□□ -0.38
CCDC40-201ENST00000269318 Q0VG73 95 aa12.69□□□□□ -0.38
CCDC40-201ENST00000269318 SLAQ13239 276 aa12.69□□□□□ -0.38
CCDC40-201ENST00000269318 PGLYRP4Q96LB8 373 aa12.69□□□□□ -0.38
CCDC40-201ENST00000269318 PDZD2O15018 2839 aa12.69□□□□□ -0.38
CCDC40-201ENST00000269318 NUPR1O60356 82 aa12.69□□□□□ -0.38
CCDC40-201ENST00000269318 APCSP02743 223 aa12.69□□□□□ -0.38
CCDC40-201ENST00000269318 KIAA1644Q3SXP7 199 aa12.69□□□□□ -0.38
CCDC40-201ENST00000269318 GPHB5Q86YW7 130 aa12.69□□□□□ -0.38
CCDC40-201ENST00000269318 ITPR3Q14573 2671 aa12.68□□□□□ -0.38
CCDC40-201ENST00000269318 HBBP68871 147 aa12.68□□□□□ -0.38
CCDC40-201ENST00000269318 SH2D1AO60880 128 aa12.67□□□□□ -0.38
CCDC40-201ENST00000269318 CAMPP49913 170 aa12.67□□□□□ -0.38
CCDC40-201ENST00000269318 ERCC8Q13216 396 aa12.67□□□□□ -0.38
CCDC40-201ENST00000269318 FAM162BQ5T6X4 162 aa12.67□□□□□ -0.38
CCDC40-201ENST00000269318 MYOZ3Q8TDC0 251 aa12.67□□□□□ -0.38
CCDC40-201ENST00000269318 HELZ2Q9BYK8 2649 aaKnown RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 59.8 ms