RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 PDE6HQ13956 83 aa9.34□□□□□ -0.91
SS18-202ENST00000269138 DEFB135Q30KP9 77 aa9.34□□□□□ -0.91
SS18-202ENST00000269138 BAP18Q8IXM2 172 aa9.34□□□□□ -0.91
SS18-202ENST00000269138 RCHY1Q96PM5 261 aa9.34□□□□□ -0.91
SS18-202ENST00000269138 OVOL2Q9BRP0 275 aa9.34□□□□□ -0.91
SS18-202ENST00000269138 ZMAT4Q9H898 229 aa9.34□□□□□ -0.91
SS18-202ENST00000269138 U3KQK5 164 aa9.34□□□□□ -0.91
SS18-202ENST00000269138 TENM3Q9P273 2699 aa9.33□□□□□ -0.92
SS18-202ENST00000269138 UBE2CO00762 179 aa9.33□□□□□ -0.92
SS18-202ENST00000269138 SEC11BP0C7V7 166 aa9.33□□□□□ -0.92
SS18-202ENST00000269138 FHITP49789 147 aa9.33□□□□□ -0.92
SS18-202ENST00000269138 CNN1P51911 297 aaKnown RBP9.33□□□□□ -0.92
SS18-202ENST00000269138 RANP62826 216 aaKnown RBP9.33□□□□□ -0.92
SS18-202ENST00000269138 PSG9Q00887 426 aa9.33□□□□□ -0.92
SS18-202ENST00000269138 ICAM4Q14773 271 aa9.33□□□□□ -0.92
SS18-202ENST00000269138 PQLC2Q6ZP29 291 aa9.33□□□□□ -0.92
SS18-202ENST00000269138 OR8A1Q8NGG7 326 aa9.33□□□□□ -0.92
SS18-202ENST00000269138 STOML3Q8TAV4 291 aa9.33□□□□□ -0.92
SS18-202ENST00000269138 TMED6Q8WW62 240 aa9.33□□□□□ -0.92
SS18-202ENST00000269138 HUWE1Q7Z6Z7 4374 aaKnown RBP9.32□□□□□ -0.92
SS18-202ENST00000269138 TPT1P13693 172 aaKnown RBP9.32□□□□□ -0.92
SS18-202ENST00000269138 GCHFRP30047 84 aa9.32□□□□□ -0.92
SS18-202ENST00000269138 EIF5AP63241 154 aaKnown RBP9.32□□□□□ -0.92
SS18-202ENST00000269138 HIST1H1AQ02539 215 aaPredicted RBP9.32□□□□□ -0.92
SS18-202ENST00000269138 MORN3Q6PF18 240 aaPredicted RBP9.32□□□□□ -0.92
SS18-202ENST00000269138 AMTNQ6UX39 209 aa9.32□□□□□ -0.92
SS18-202ENST00000269138 Q6ZWC4 215 aa9.32□□□□□ -0.92
SS18-202ENST00000269138 SLC35B3Q9H1N7 401 aa9.32□□□□□ -0.92
SS18-202ENST00000269138 CLEC5AQ9NY25 188 aa9.32□□□□□ -0.92
SS18-202ENST00000269138 CTXND1A0A1B0GTU2 59 aa9.31□□□□□ -0.92
SS18-202ENST00000269138 A8MTW9 85 aa9.31□□□□□ -0.92
SS18-202ENST00000269138 SPRY2O43597 315 aa9.31□□□□□ -0.92
SS18-202ENST00000269138 DUSP14O95147 198 aaKnown RBP9.31□□□□□ -0.92
SS18-202ENST00000269138 FGF8P55075 233 aaPredicted RBP9.31□□□□□ -0.92
SS18-202ENST00000269138 RNF183Q96D59 192 aa9.31□□□□□ -0.92
SS18-202ENST00000269138 CLUHP3Q96NS8 147 aa9.31□□□□□ -0.92
SS18-202ENST00000269138 Q9H3A6 140 aa9.31□□□□□ -0.92
SS18-202ENST00000269138 XCL2Q9UBD3 114 aa9.31□□□□□ -0.92
SS18-202ENST00000269138 BOLA1Q9Y3E2 137 aa9.31□□□□□ -0.92
SS18-202ENST00000269138 SLC51BQ86UW2 128 aa9.31□□□□□ -0.92
SS18-202ENST00000269138 MRPL53Q96EL3 112 aaKnown RBP9.31□□□□□ -0.92
SS18-202ENST00000269138 TMPRSS5Q9H3S3 457 aa9.31□□□□□ -0.92
SS18-202ENST00000269138 AAMDCQ9H7C9 122 aa9.31□□□□□ -0.92
SS18-202ENST00000269138 PRELID1Q9Y255 219 aa9.31□□□□□ -0.92
SS18-202ENST00000269138 CXorf1O96002 111 aa9.3□□□□□ -0.92
SS18-202ENST00000269138 ERCC8Q13216 396 aa9.3□□□□□ -0.92
SS18-202ENST00000269138 IQCF2Q8IXL9 164 aa9.3□□□□□ -0.92
SS18-202ENST00000269138 CSNK1G2-AS1Q8NCQ2 148 aa9.3□□□□□ -0.92
SS18-202ENST00000269138 FAM213BQ8TBF2 198 aa9.3□□□□□ -0.92
SS18-202ENST00000269138 SUN5Q8TC36 379 aa9.3□□□□□ -0.92
SS18-202ENST00000269138 TP53TG1Q9Y2A0 90 aa9.3□□□□□ -0.92
SS18-202ENST00000269138 IGKV2-40A0A087WW87 121 aaPredicted RBP9.29□□□□□ -0.92
SS18-202ENST00000269138 MAP1LC3B2A6NCE7 125 aa9.29□□□□□ -0.92
SS18-202ENST00000269138 PGPA6NDG6 321 aa9.29□□□□□ -0.92
SS18-202ENST00000269138 UMAD1C9J7I0 102 aa9.29□□□□□ -0.92
SS18-202ENST00000269138 M0R2Z0 102 aa9.29□□□□□ -0.92
SS18-202ENST00000269138 IGKV2D-40P01614 121 aaPredicted RBP9.29□□□□□ -0.92
SS18-202ENST00000269138 NUTF2P61970 127 aaKnown RBP9.29□□□□□ -0.92
SS18-202ENST00000269138 SPINK13Q1W4C9 94 aa9.29□□□□□ -0.92
SS18-202ENST00000269138 LYPD1Q8N2G4 141 aa9.29□□□□□ -0.92
SS18-202ENST00000269138 OR10J6PQ8NGY7 276 aa9.29□□□□□ -0.92
SS18-202ENST00000269138 MAP1LC3BQ9GZQ8 125 aa9.29□□□□□ -0.92
SS18-202ENST00000269138 OTORQ9NRC9 128 aa9.29□□□□□ -0.92
SS18-202ENST00000269138 CT45A10P0DMU9 189 aa9.28□□□□□ -0.92
SS18-202ENST00000269138 TMEM167BQ9NRX6 74 aa9.28□□□□□ -0.92
SS18-202ENST00000269138 NPIPB6E9PJ23 425 aa9.27□□□□□ -0.93
SS18-202ENST00000269138 KIR3DS1Q14943 382 aa9.27□□□□□ -0.93
SS18-202ENST00000269138 OR11H2Q8NH07 326 aa9.27□□□□□ -0.93
SS18-202ENST00000269138 MBD3L1Q8WWY6 194 aa9.27□□□□□ -0.93
SS18-202ENST00000269138 VGLL1Q99990 258 aa9.27□□□□□ -0.93
SS18-202ENST00000269138 AGPAT4-IT1Q9H0P7 198 aa9.27□□□□□ -0.93
SS18-202ENST00000269138 PPP1R14DQ9NXH3 145 aa9.27□□□□□ -0.93
SS18-202ENST00000269138 STAB2Q8WWQ8 2551 aa9.26□□□□□ -0.93
SS18-202ENST00000269138 TRAV12-2A0A075B6T6 113 aa9.26□□□□□ -0.93
SS18-202ENST00000269138 A0A1B0GV50 99 aa9.26□□□□□ -0.93
SS18-202ENST00000269138 BOLA2-SMG1P6H3BVE0 249 aa9.26□□□□□ -0.93
SS18-202ENST00000269138 CRXO43186 299 aaPredicted RBP9.26□□□□□ -0.93
SS18-202ENST00000269138 GNG5P63218 68 aa9.26□□□□□ -0.93
SS18-202ENST00000269138 FAM74A1Q5RGS3 127 aa9.26□□□□□ -0.93
SS18-202ENST00000269138 SFT2D1Q8WV19 159 aa9.26□□□□□ -0.93
SS18-202ENST00000269138 RARRES2Q99969 163 aa9.26□□□□□ -0.93
SS18-202ENST00000269138 C1QTNF4Q9BXJ3 329 aa9.26□□□□□ -0.93
SS18-202ENST00000269138 RPH3ALQ9UNE2 315 aa9.26□□□□□ -0.93
SS18-202ENST00000269138 YTHDF2Q9Y5A9 579 aaKnown RBP9.26□□□□□ -0.93
SS18-202ENST00000269138 GGTLC3B5MD39 225 aa9.26□□□□□ -0.93
SS18-202ENST00000269138 DIRC3C9JPN6 131 aa9.26□□□□□ -0.93
SS18-202ENST00000269138 CSN1S1P47710 185 aa9.26□□□□□ -0.93
SS18-202ENST00000269138 UBE2G2P60604 165 aa9.26□□□□□ -0.93
SS18-202ENST00000269138 EIF5AL1Q6IS14 154 aaKnown RBP9.26□□□□□ -0.93
SS18-202ENST00000269138 DPPA3Q6W0C5 159 aa9.26□□□□□ -0.93
SS18-202ENST00000269138 C1orf158Q8N1D5 194 aa9.26□□□□□ -0.93
SS18-202ENST00000269138 X6R8D5 127 aa9.26□□□□□ -0.93
SS18-202ENST00000269138 IGHV3OR16-12A0A075B7B8 117 aa9.25□□□□□ -0.93
SS18-202ENST00000269138 SLC25A5P05141 298 aaKnown RBP9.25□□□□□ -0.93
SS18-202ENST00000269138 H2AFB1P0C5Y9 115 aa9.25□□□□□ -0.93
SS18-202ENST00000269138 SULT1A2P50226 295 aa9.25□□□□□ -0.93
SS18-202ENST00000269138 SUMO1P63165 101 aaKnown RBP9.25□□□□□ -0.93
SS18-202ENST00000269138 C9orf47Q6ZRZ4 202 aa9.25□□□□□ -0.93
SS18-202ENST00000269138 RXFP4Q8TDU9 374 aa9.25□□□□□ -0.93
SS18-202ENST00000269138 IGF2BP2-AS1Q96M15 143 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 130.6 ms