RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 APOHP02749 345 aaPredicted RBP7.93□□□□□ -1.14
LIG3-201ENST00000262327 IL4P05112 153 aa7.93□□□□□ -1.14
LIG3-201ENST00000262327 LOXL1Q08397 574 aaPredicted RBP7.93□□□□□ -1.14
LIG3-201ENST00000262327 PSG3Q16557 428 aa7.93□□□□□ -1.14
LIG3-201ENST00000262327 THYN1Q9P016 225 aa7.93□□□□□ -1.14
LIG3-201ENST00000262327 FAM90A27PA6NNH2 459 aa7.93□□□□□ -1.14
LIG3-201ENST00000262327 TIMM23O14925 209 aa7.93□□□□□ -1.14
LIG3-201ENST00000262327 CRYGBP07316 175 aa7.93□□□□□ -1.14
LIG3-201ENST00000262327 OTORQ9NRC9 128 aa7.93□□□□□ -1.14
LIG3-201ENST00000262327 SPTAN1Q13813 2472 aaKnown RBP7.93□□□□□ -1.14
LIG3-201ENST00000262327 VSTM5A8MXK1 200 aa7.92□□□□□ -1.14
LIG3-201ENST00000262327 I3L2K1 104 aa7.92□□□□□ -1.14
LIG3-201ENST00000262327 IGLV1-47P01700 117 aa7.92□□□□□ -1.14
LIG3-201ENST00000262327 GRNP28799 593 aaKnown RBP7.92□□□□□ -1.14
LIG3-201ENST00000262327 CRIP1P50238 77 aa7.92□□□□□ -1.14
LIG3-201ENST00000262327 KLRD1Q13241 179 aa7.92□□□□□ -1.14
LIG3-201ENST00000262327 SIGMAR1Q99720 223 aa7.92□□□□□ -1.14
LIG3-201ENST00000262327 TMEM213A2RRL7 107 aa7.92□□□□□ -1.14
LIG3-201ENST00000262327 HES1Q14469 280 aa7.92□□□□□ -1.14
LIG3-201ENST00000262327 WFDC3Q8IUB2 231 aa7.92□□□□□ -1.14
LIG3-201ENST00000262327 MAP1LC3CQ9BXW4 147 aa7.92□□□□□ -1.14
LIG3-201ENST00000262327 ZNF492Q9P255 531 aa7.92□□□□□ -1.14
LIG3-201ENST00000262327 PEF1Q9UBV8 284 aaKnown RBP7.92□□□□□ -1.14
LIG3-201ENST00000262327 A0A1B0GUT8 65 aa7.92□□□□□ -1.14
LIG3-201ENST00000262327 OR8A1Q8NGG7 326 aa7.92□□□□□ -1.14
LIG3-201ENST00000262327 PSG8Q9UQ74 426 aa7.92□□□□□ -1.14
LIG3-201ENST00000262327 CHD8Q9HCK8 2581 aa7.91□□□□□ -1.14
LIG3-201ENST00000262327 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.91□□□□□ -1.14
LIG3-201ENST00000262327 K7EIM0 57 aa7.91□□□□□ -1.14
LIG3-201ENST00000262327 IFI27P40305 119 aaPredicted RBP7.91□□□□□ -1.14
LIG3-201ENST00000262327 SLC25A34Q6PIV7 304 aa7.91□□□□□ -1.14
LIG3-201ENST00000262327 PRSS3P2Q8NHM4 247 aa7.91□□□□□ -1.14
LIG3-201ENST00000262327 NEU4Q8WWR8 484 aaPredicted RBP7.91□□□□□ -1.14
LIG3-201ENST00000262327 ZNF479Q96JC4 524 aa7.91□□□□□ -1.14
LIG3-201ENST00000262327 TMEM191AQ9H0A3 160 aa7.91□□□□□ -1.14
LIG3-201ENST00000262327 TRBV19A0A075B6N1 114 aa7.91□□□□□ -1.14
LIG3-201ENST00000262327 SMKR1H3BMG3 65 aa7.91□□□□□ -1.14
LIG3-201ENST00000262327 OVOL3O00110 214 aa7.91□□□□□ -1.14
LIG3-201ENST00000262327 CD5LO43866 347 aa7.91□□□□□ -1.14
LIG3-201ENST00000262327 HLA-DRB1P01911 266 aa7.91□□□□□ -1.14
LIG3-201ENST00000262327 UFSP1Q6NVU6 142 aa7.91□□□□□ -1.14
LIG3-201ENST00000262327 NEGR1Q7Z3B1 354 aa7.91□□□□□ -1.14
LIG3-201ENST00000262327 CHCHD1Q96BP2 118 aaKnown RBP7.91□□□□□ -1.14
LIG3-201ENST00000262327 MAP1AP78559 2803 aaPredicted RBP7.9□□□□□ -1.14
LIG3-201ENST00000262327 FAM231BA6NCW3 169 aa7.9□□□□□ -1.14
LIG3-201ENST00000262327 NPIPB6E9PJ23 425 aa7.9□□□□□ -1.14
LIG3-201ENST00000262327 LIPFP07098 398 aa7.9□□□□□ -1.14
LIG3-201ENST00000262327 OR5AL1P0C617 328 aa7.9□□□□□ -1.14
LIG3-201ENST00000262327 GNLYP22749 145 aa7.9□□□□□ -1.14
LIG3-201ENST00000262327 CT83Q5H943 113 aa7.9□□□□□ -1.14
LIG3-201ENST00000262327 BPIFA4PQ86YQ2 179 aa7.9□□□□□ -1.14
LIG3-201ENST00000262327 NDFIP1Q9BT67 221 aa7.9□□□□□ -1.14
LIG3-201ENST00000262327 COL12A1Q99715 3063 aa7.9□□□□□ -1.14
LIG3-201ENST00000262327 IGKV2-40A0A087WW87 121 aaPredicted RBP7.9□□□□□ -1.14
LIG3-201ENST00000262327 HAX1O00165 279 aa7.9□□□□□ -1.14
LIG3-201ENST00000262327 IGKV2D-40P01614 121 aaPredicted RBP7.9□□□□□ -1.14
LIG3-201ENST00000262327 UQCRFS1P47985 274 aa7.9□□□□□ -1.14
LIG3-201ENST00000262327 SIGLEC15Q6ZMC9 328 aa7.9□□□□□ -1.14
LIG3-201ENST00000262327 AMN1Q8IY45 258 aa7.9□□□□□ -1.14
LIG3-201ENST00000262327 ZNF491Q8N8L2 437 aa7.9□□□□□ -1.14
LIG3-201ENST00000262327 Q8TAT8 98 aa7.9□□□□□ -1.14
LIG3-201ENST00000262327 RNF125Q96EQ8 232 aa7.9□□□□□ -1.14
LIG3-201ENST00000262327 AP5S1Q9NUS5 200 aa7.9□□□□□ -1.14
LIG3-201ENST00000262327 KAAG1Q9UBP8 84 aa7.9□□□□□ -1.14
LIG3-201ENST00000262327 D6R8Y8 96 aa7.89□□□□□ -1.15
LIG3-201ENST00000262327 CD3EP07766 207 aa7.89□□□□□ -1.15
LIG3-201ENST00000262327 HLA-DMBP28068 263 aa7.89□□□□□ -1.15
LIG3-201ENST00000262327 PLP1P60201 277 aa7.89□□□□□ -1.15
LIG3-201ENST00000262327 FA2HQ7L5A8 372 aa7.89□□□□□ -1.15
LIG3-201ENST00000262327 C8orf31Q8N9H6 132 aa7.89□□□□□ -1.15
LIG3-201ENST00000262327 NAA38Q9BRA0 125 aaKnown RBP7.89□□□□□ -1.15
LIG3-201ENST00000262327 ST20Q9HBF5 79 aa7.89□□□□□ -1.15
LIG3-201ENST00000262327 CRXO43186 299 aaPredicted RBP7.89□□□□□ -1.15
LIG3-201ENST00000262327 C5orf64Q2M2E5 130 aa7.89□□□□□ -1.15
LIG3-201ENST00000262327 PVRIGQ6DKI7 326 aa7.89□□□□□ -1.15
LIG3-201ENST00000262327 LYZL1Q6UWQ5 148 aa7.89□□□□□ -1.15
LIG3-201ENST00000262327 SHANK2-AS3Q9BTD1 123 aa7.89□□□□□ -1.15
LIG3-201ENST00000262327 GFRA4Q9GZZ7 299 aa7.89□□□□□ -1.15
LIG3-201ENST00000262327 HRNRQ86YZ3 2850 aaPredicted RBP7.89□□□□□ -1.15
LIG3-201ENST00000262327 CELSR1Q9NYQ6 3014 aa7.89□□□□□ -1.15
LIG3-201ENST00000262327 C7orf71A4D174 169 aa7.89□□□□□ -1.15
LIG3-201ENST00000262327 CDSNQ15517 529 aa7.89□□□□□ -1.15
LIG3-201ENST00000262327 C12orf54Q6X4T0 127 aa7.89□□□□□ -1.15
LIG3-201ENST00000262327 GTF2H5Q6ZYL4 71 aa7.89□□□□□ -1.15
LIG3-201ENST00000262327 TMEM75Q8N9X5 138 aa7.89□□□□□ -1.15
LIG3-201ENST00000262327 SOX21Q9Y651 276 aaPredicted RBP7.89□□□□□ -1.15
LIG3-201ENST00000262327 RIGQ13278 110 aa7.88□□□□□ -1.15
LIG3-201ENST00000262327 ITLN2Q8WWU7 325 aaPredicted RBP7.88□□□□□ -1.15
LIG3-201ENST00000262327 SCRT2Q9NQ03 307 aa7.88□□□□□ -1.15
LIG3-201ENST00000262327 PKD1L2Q7Z442 2459 aa7.88□□□□□ -1.15
LIG3-201ENST00000262327 NCBP2LA6PVI3 153 aaKnown RBP7.88□□□□□ -1.15
LIG3-201ENST00000262327 H3BRN7 92 aa7.88□□□□□ -1.15
LIG3-201ENST00000262327 FAM162BQ5T6X4 162 aa7.88□□□□□ -1.15
LIG3-201ENST00000262327 ZNF414Q96IQ9 312 aa7.88□□□□□ -1.15
LIG3-201ENST00000262327 K7EQM0 130 aa7.87□□□□□ -1.15
LIG3-201ENST00000262327 RPL24P83731 157 aaKnown RBP7.87□□□□□ -1.15
LIG3-201ENST00000262327 HSD52Q0P140 79 aa7.87□□□□□ -1.15
LIG3-201ENST00000262327 ZNF747Q9BV97 191 aa7.87□□□□□ -1.15
LIG3-201ENST00000262327 TMEM14CQ9P0S9 112 aa7.87□□□□□ -1.15
LIG3-201ENST00000262327 HSPB8Q9UJY1 196 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms