RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 IGHV3-30P01768 117 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 APOEP02649 317 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 IFNA16P05015 189 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 CALB1P05937 261 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 OCM2P0CE71 109 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 IGHV3-30-5P0DP03 117 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 CYBAP13498 195 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 HLA-EP13747 358 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 S100A4P26447 101 aaKnown RBP-0.24□□□□□ -2.45
VPS35-212ENST00000640313 ANP32AP39687 249 aaKnown RBP-0.24□□□□□ -2.45
VPS35-212ENST00000640313 ATP5G3P48201 142 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 FXYD6P3P58550 94 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 RPL37AP61513 92 aaKnown RBP-0.24□□□□□ -2.45
VPS35-212ENST00000640313 LSM6P62312 80 aaKnown RBP-0.24□□□□□ -2.45
VPS35-212ENST00000640313 RANP62826 216 aaKnown RBP-0.24□□□□□ -2.45
VPS35-212ENST00000640313 EIF5AP63241 154 aaKnown RBP-0.24□□□□□ -2.45
VPS35-212ENST00000640313 CDK6Q00534 326 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 MIR22HGQ0VDD5 57 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 IMPG1Q17R60 797 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 SPINK13Q1W4C9 94 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 GLYATL3Q5SZD4 288 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 OGFRL1Q5TC84 451 aaPredicted RBP-0.24□□□□□ -2.45
VPS35-212ENST00000640313 SPOPLQ6IQ16 392 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 FOXI2Q6ZQN5 318 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 ZCCHC23Q6ZST2 131 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 VMO1Q7Z5L0 202 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 ARPINQ7Z6K5 226 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 TEN1Q86WV5 123 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 FAM9CQ8IZT9 166 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 LINC00269Q8N2A0 174 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 C10orf111Q8N326 155 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 PXT1Q8NFP0 134 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 OR5D14Q8NGL3 314 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 FAM172AQ8WUF8 416 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 POP5Q969H6 163 aaKnown RBP-0.24□□□□□ -2.45
VPS35-212ENST00000640313 MUCL1Q96DR8 90 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 TEX37Q96LM6 180 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 HYLS1Q96M11 299 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 PRAP1Q96NZ9 151 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 SLC25A21Q9BQT8 299 aaPredicted RBP-0.24□□□□□ -2.45
VPS35-212ENST00000640313 CCDC90BQ9GZT6 254 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 PBOV1Q9GZY1 135 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 DRC3Q9H069 523 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 PARVBQ9HBI1 364 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 TVP23BQ9NYZ1 205 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 USE1Q9NZ43 259 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 GLTPQ9NZD2 209 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 OR52A1Q9UKL2 312 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 FBXO5Q9UKT4 447 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 GUCA1BQ9UMX6 200 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 NOSIPQ9Y314 301 aaKnown RBP-0.24□□□□□ -2.45
VPS35-212ENST00000640313 PRELID3BQ9Y3B1 194 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 ATP6V1DQ9Y5K8 247 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 AKAP9Q99996 3911 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 ERBINQ96RT1 1412 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 SNAPC4Q5SXM2 1469 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 KDM6BO15054 1643 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 PLXNA4Q9HCM2 1894 aa-0.24□□□□□ -2.45
VPS35-212ENST00000640313 DYNC1H1Q14204 4646 aaKnown RBP-0.25□□□□□ -2.45
VPS35-212ENST00000640313 PLECQ15149 4684 aaKnown RBP-0.25□□□□□ -2.45
VPS35-212ENST00000640313 ACANP16112 2415 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 TRBV19A0A075B6N1 114 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 LOC107984156A0A0G2JMH3 177 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 hDV103S1A0JD37 113 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 C9orf170A2RU37 121 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 C10orf142B7Z368 130 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 C17orf112F2Z3M2 114 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 J3QRK9 145 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 TMEM256-PLSCR3K7ERE1 68 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 M0R233 179 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 TAX1BP3O14907 124 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 CYB5BO43169 146 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 NDUFB3O43676 98 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 PDE6DO43924 150 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 TNNC2P02585 160 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 CD3DP04234 171 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 TCRBP04435 133 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 CRHP06850 196 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 OR10J4P0C629 311 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 SPRR2DP22532 72 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 SRP14P37108 136 aaKnown RBP-0.25□□□□□ -2.45
VPS35-212ENST00000640313 OMPP47874 163 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 SULT1A1P50225 295 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 SERPINB9P50453 376 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 RAB5CP51148 216 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 INSL3P51460 131 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 DYNLT3P51808 116 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 AP2S1P53680 142 aaPredicted RBP-0.25□□□□□ -2.45
VPS35-212ENST00000640313 CAV3P56539 151 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 PIGPP57054 158 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 RHOBP62745 196 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 KRR1Q13601 381 aaKnown RBP-0.25□□□□□ -2.45
VPS35-212ENST00000640313 ZNF56Q15929 161 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 KRTAP19-7Q3SYF9 63 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 XAF1Q6GPH4 301 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 CASC2Q6XLA1 102 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 ARL17AQ8IVW1 177 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 OTUD6BQ8N6M0 293 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 C5orf56Q8N8D9 126 aa-0.25□□□□□ -2.45
VPS35-212ENST00000640313 OR51A2Q8NGJ7 313 aa-0.25□□□□□ -2.45
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms