RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 TEPPQ6URK8 271 aa11.47□□□□□ -0.57
CLN3-264ENST00000637985 C20orf173Q96LM9 149 aa11.47□□□□□ -0.57
CLN3-264ENST00000637985 ATG101Q9BSB4 218 aa11.47□□□□□ -0.57
CLN3-264ENST00000637985 SHANK2-AS3Q9BTD1 123 aa11.47□□□□□ -0.57
CLN3-264ENST00000637985 GGACTQ9BVM4 153 aa11.47□□□□□ -0.57
CLN3-264ENST00000637985 DOK5Q9P104 306 aa11.47□□□□□ -0.57
CLN3-264ENST00000637985 RNF24Q9Y225 148 aa11.47□□□□□ -0.57
CLN3-264ENST00000637985 RCL1Q9Y2P8 373 aaKnown RBP11.47□□□□□ -0.57
CLN3-264ENST00000637985 TEX48A0A1B0GUV7 120 aa11.46□□□□□ -0.57
CLN3-264ENST00000637985 A8MTW9 85 aa11.46□□□□□ -0.57
CLN3-264ENST00000637985 F6UB75 175 aa11.46□□□□□ -0.57
CLN3-264ENST00000637985 MBPP02686 304 aaPredicted RBP11.46□□□□□ -0.57
CLN3-264ENST00000637985 LINC00869P0C866 280 aa11.46□□□□□ -0.57
CLN3-264ENST00000637985 XGP55808 180 aa11.46□□□□□ -0.57
CLN3-264ENST00000637985 FAM222AQ5U5X8 452 aa11.46□□□□□ -0.57
CLN3-264ENST00000637985 GSG1LQ6UXU4 331 aa11.46□□□□□ -0.57
CLN3-264ENST00000637985 C15orf53Q8NAA6 179 aa11.46□□□□□ -0.57
CLN3-264ENST00000637985 FRZBQ92765 325 aa11.46□□□□□ -0.57
CLN3-264ENST00000637985 CCDC32Q9BV29 185 aa11.46□□□□□ -0.57
CLN3-264ENST00000637985 SLC35B3Q9H1N7 401 aa11.46□□□□□ -0.57
CLN3-264ENST00000637985 GOLT1BQ9Y3E0 138 aa11.46□□□□□ -0.57
CLN3-264ENST00000637985 RFNGQ9Y644 331 aa11.46□□□□□ -0.57
CLN3-264ENST00000637985 HMCN2Q8NDA2 5059 aa11.46□□□□□ -0.58
CLN3-264ENST00000637985 C7orf66A4D0T2 115 aa11.45□□□□□ -0.58
CLN3-264ENST00000637985 OR5G3P0C626 314 aa11.45□□□□□ -0.58
CLN3-264ENST00000637985 ZNF846Q147U1 533 aa11.45□□□□□ -0.58
CLN3-264ENST00000637985 PXDC1Q5TGL8 231 aa11.45□□□□□ -0.58
CLN3-264ENST00000637985 LINC00299Q6ZSB3 139 aa11.45□□□□□ -0.58
CLN3-264ENST00000637985 IGHV3OR16-12A0A075B7B8 117 aa11.44□□□□□ -0.58
CLN3-264ENST00000637985 DUSP14O95147 198 aaKnown RBP11.44□□□□□ -0.58
CLN3-264ENST00000637985 BTF3P20290 206 aaKnown RBP11.44□□□□□ -0.58
CLN3-264ENST00000637985 ZNF431Q8TF32 576 aaPredicted RBP11.44□□□□□ -0.58
CLN3-264ENST00000637985 TRAV6A0A075B6T7 132 aa11.43□□□□□ -0.58
CLN3-264ENST00000637985 A0A087X0K7 114 aa11.43□□□□□ -0.58
CLN3-264ENST00000637985 TRAV8-2A0A0B4J237 113 aa11.43□□□□□ -0.58
CLN3-264ENST00000637985 L7N2F9 121 aa11.43□□□□□ -0.58
CLN3-264ENST00000637985 VAMP2P63027 116 aa11.43□□□□□ -0.58
CLN3-264ENST00000637985 FGL1Q08830 312 aa11.43□□□□□ -0.58
CLN3-264ENST00000637985 SLC38A11Q08AI6 406 aa11.43□□□□□ -0.58
CLN3-264ENST00000637985 AMTNQ6UX39 209 aa11.43□□□□□ -0.58
CLN3-264ENST00000637985 ZNF546Q86UE3 836 aa11.43□□□□□ -0.58
CLN3-264ENST00000637985 UHRF2Q96PU4 802 aa11.43□□□□□ -0.58
CLN3-264ENST00000637985 ARL6Q9H0F7 186 aa11.43□□□□□ -0.58
CLN3-264ENST00000637985 ARV1Q9H2C2 271 aa11.43□□□□□ -0.58
CLN3-264ENST00000637985 NUDT15Q9NV35 164 aa11.43□□□□□ -0.58
CLN3-264ENST00000637985 CCSO14618 274 aa11.42□□□□□ -0.58
CLN3-264ENST00000637985 GOSR2O14653 212 aa11.42□□□□□ -0.58
CLN3-264ENST00000637985 AGPAT2O15120 278 aa11.42□□□□□ -0.58
CLN3-264ENST00000637985 HBE1P02100 147 aa11.42□□□□□ -0.58
CLN3-264ENST00000637985 ARL16Q0P5N6 197 aa11.42□□□□□ -0.58
CLN3-264ENST00000637985 PATE2Q6UY27 113 aa11.42□□□□□ -0.58
CLN3-264ENST00000637985 C1orf158Q8N1D5 194 aa11.42□□□□□ -0.58
CLN3-264ENST00000637985 C12orf45Q8N5I9 185 aaPredicted RBP11.42□□□□□ -0.58
CLN3-264ENST00000637985 IGF2BP2-AS1Q96M15 143 aa11.42□□□□□ -0.58
CLN3-264ENST00000637985 C5orf51A6NDU8 294 aa11.41□□□□□ -0.58
CLN3-264ENST00000637985 FAM25EA8MYX2 175 aa11.41□□□□□ -0.58
CLN3-264ENST00000637985 J3QL48 77 aa11.41□□□□□ -0.58
CLN3-264ENST00000637985 H2AFB2P0C5Z0 115 aa11.41□□□□□ -0.58
CLN3-264ENST00000637985 CNN1P51911 297 aaKnown RBP11.41□□□□□ -0.58
CLN3-264ENST00000637985 IGFL4Q6B9Z1 124 aa11.41□□□□□ -0.58
CLN3-264ENST00000637985 RNF182Q8N6D2 247 aa11.41□□□□□ -0.58
CLN3-264ENST00000637985 OR11H7Q8NGC8 314 aa11.41□□□□□ -0.58
CLN3-264ENST00000637985 C2orf50Q96LR7 162 aa11.41□□□□□ -0.58
CLN3-264ENST00000637985 SEC22CQ9BRL7 303 aa11.41□□□□□ -0.58
CLN3-264ENST00000637985 LSM5Q9Y4Y9 91 aaKnown RBP11.41□□□□□ -0.58
CLN3-264ENST00000637985 FAM240BA0A1B0GVZ2 78 aa11.4□□□□□ -0.58
CLN3-264ENST00000637985 CXCL2P19875 107 aa11.4□□□□□ -0.58
CLN3-264ENST00000637985 BCAP31P51572 246 aa11.4□□□□□ -0.58
CLN3-264ENST00000637985 RAB31Q13636 194 aa11.4□□□□□ -0.58
CLN3-264ENST00000637985 RRN3P1Q2M238 152 aa11.4□□□□□ -0.58
CLN3-264ENST00000637985 MZT2BQ6NZ67 158 aa11.4□□□□□ -0.58
CLN3-264ENST00000637985 LINC00305Q7Z4B0 112 aa11.4□□□□□ -0.58
CLN3-264ENST00000637985 ZNF738Q8NE65 137 aa11.4□□□□□ -0.58
CLN3-264ENST00000637985 LRRC20Q8TCA0 184 aa11.4□□□□□ -0.58
CLN3-264ENST00000637985 S100ZQ8WXG8 99 aa11.4□□□□□ -0.58
CLN3-264ENST00000637985 TMEM208Q9BTX3 173 aa11.4□□□□□ -0.58
CLN3-264ENST00000637985 LOC102723971A0A1B0GUV8 181 aa11.39□□□□□ -0.59
CLN3-264ENST00000637985 MRPS12O15235 138 aaKnown RBP11.39□□□□□ -0.59
CLN3-264ENST00000637985 CXCL3P19876 107 aa11.39□□□□□ -0.59
CLN3-264ENST00000637985 PVALBP20472 110 aaPredicted RBP11.39□□□□□ -0.59
CLN3-264ENST00000637985 CAV2P51636 162 aa11.39□□□□□ -0.59
CLN3-264ENST00000637985 B2MP61769 119 aa11.39□□□□□ -0.59
CLN3-264ENST00000637985 PSG3Q16557 428 aa11.39□□□□□ -0.59
CLN3-264ENST00000637985 MGST2Q99735 147 aa11.39□□□□□ -0.59
CLN3-264ENST00000637985 KRTAP1-5Q9BYS1 174 aa11.39□□□□□ -0.59
CLN3-264ENST00000637985 C11orf1Q9H5F2 150 aa11.39□□□□□ -0.59
CLN3-264ENST00000637985 LINC00588Q9Y4M8 146 aa11.39□□□□□ -0.59
CLN3-264ENST00000637985 CRXO43186 299 aaPredicted RBP11.38□□□□□ -0.59
CLN3-264ENST00000637985 COX7A2P2O60397 106 aa11.38□□□□□ -0.59
CLN3-264ENST00000637985 INSP01308 110 aa11.38□□□□□ -0.59
CLN3-264ENST00000637985 CCL18P55774 89 aa11.38□□□□□ -0.59
CLN3-264ENST00000637985 SPINK13Q1W4C9 94 aa11.38□□□□□ -0.59
CLN3-264ENST00000637985 LCN15Q6UWW0 184 aa11.38□□□□□ -0.59
CLN3-264ENST00000637985 BPIFA4PQ86YQ2 179 aa11.38□□□□□ -0.59
CLN3-264ENST00000637985 OR8A1Q8NGG7 326 aa11.38□□□□□ -0.59
CLN3-264ENST00000637985 MDFICQ9P1T7 246 aa11.38□□□□□ -0.59
CLN3-264ENST00000637985 M0R2Z0 102 aa11.37□□□□□ -0.59
CLN3-264ENST00000637985 CST7O76096 145 aa11.37□□□□□ -0.59
CLN3-264ENST00000637985 CAMLGP49069 296 aa11.37□□□□□ -0.59
CLN3-264ENST00000637985 DAD1P61803 113 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms