RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 PRDX2P32119 198 aa4.63□□□□□ -1.67
SCN1A-216ENST00000637968 SYNJ2BPP57105 145 aa4.63□□□□□ -1.67
SCN1A-216ENST00000637968 ERHP84090 104 aaKnown RBP4.63□□□□□ -1.67
SCN1A-216ENST00000637968 VWA8A3KMH1 1905 aa4.63□□□□□ -1.67
SCN1A-216ENST00000637968 CACNA1GO43497 2377 aa4.62□□□□□ -1.67
SCN1A-216ENST00000637968 H0YIG0 161 aa4.62□□□□□ -1.67
SCN1A-216ENST00000637968 CRYGBP07316 175 aa4.62□□□□□ -1.67
SCN1A-216ENST00000637968 FOXE3Q13461 319 aa4.62□□□□□ -1.67
SCN1A-216ENST00000637968 PEAR1Q5VY43 1037 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-216ENST00000637968 Q71RC1 249 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-216ENST00000637968 PRORYQ9H606 182 aa4.62□□□□□ -1.67
SCN1A-216ENST00000637968 PLXNA2O75051 1894 aa4.62□□□□□ -1.67
SCN1A-216ENST00000637968 FAM236DA0A1B0GTK5 79 aa4.62□□□□□ -1.67
SCN1A-216ENST00000637968 NGFP01138 241 aa4.62□□□□□ -1.67
SCN1A-216ENST00000637968 FAM236CP0DP71 79 aa4.62□□□□□ -1.67
SCN1A-216ENST00000637968 PYYP10082 97 aa4.62□□□□□ -1.67
SCN1A-216ENST00000637968 NXPH1P58417 271 aa4.62□□□□□ -1.67
SCN1A-216ENST00000637968 TEX36Q5VZQ5 186 aa4.62□□□□□ -1.67
SCN1A-216ENST00000637968 Q6P435 159 aa4.62□□□□□ -1.67
SCN1A-216ENST00000637968 DTX2Q86UW9 622 aa4.62□□□□□ -1.67
SCN1A-216ENST00000637968 RPS19BP1Q86WX3 136 aaKnown RBP4.62□□□□□ -1.67
SCN1A-216ENST00000637968 ANAPC1Q9H1A4 1944 aa4.62□□□□□ -1.67
SCN1A-216ENST00000637968 CABIN1Q9Y6J0 2220 aa4.62□□□□□ -1.67
SCN1A-216ENST00000637968 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.62□□□□□ -1.67
SCN1A-216ENST00000637968 IGKV1-12A0A0C4DH73 117 aa4.62□□□□□ -1.67
SCN1A-216ENST00000637968 IGKV1D-12P01611 117 aa4.62□□□□□ -1.67
SCN1A-216ENST00000637968 TCF15Q12870 199 aa4.62□□□□□ -1.67
SCN1A-216ENST00000637968 CR1LQ2VPA4 569 aa4.62□□□□□ -1.67
SCN1A-216ENST00000637968 PIFOQ8TCI5 191 aa4.62□□□□□ -1.67
SCN1A-216ENST00000637968 TMEM190Q8WZ59 177 aa4.62□□□□□ -1.67
SCN1A-216ENST00000637968 A0A1W2PNR3 127 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 TM4SF5O14894 197 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 LYZL6O75951 148 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 LGALS3P17931 250 aaKnown RBP4.61□□□□□ -1.67
SCN1A-216ENST00000637968 FHL3Q13643 280 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 DEFB109BQ30KR1 87 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 LINC01620Q4KN68 170 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 ASPHD1Q5U4P2 390 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 TMEM92Q6UXU6 159 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 ZNF503Q96F45 646 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 METRNQ9UJH8 293 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 NCKAP5O14513 1909 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 C17orf98A8MV24 154 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-216ENST00000637968 SMCPP49901 116 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-216ENST00000637968 RETNQ9HD89 108 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 PCDH15Q96QU1 1955 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 PRR19A6NJB7 356 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 PMS2P5A8MQ11 134 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 ARMS2P0C7Q2 107 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 C2orf83Q53S99 150 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 PIP4P1Q86T03 277 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 LINC00643Q86TS7 51 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 FOXA2Q9Y261 457 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-216ENST00000637968 IGKV2D-26A0A0A0MRZ7 120 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 LGALS9O00182 355 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 IGLV2-8P01709 118 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 ZNF329Q86UD4 541 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 CNEP1R1Q8N9A8 125 aa4.61□□□□□ -1.67
SCN1A-216ENST00000637968 MRPL35Q9NZE8 188 aaKnown RBP4.61□□□□□ -1.67
SCN1A-216ENST00000637968 RALGAPA1Q6GYQ0 2036 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 TRAV41A0A0B4J266 112 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 TRBV10-2A0A0K0K1G8 114 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 A0A1W2PRX2 142 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 PMS2CLQ68D20 193 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 MBD3L2Q8NHZ7 208 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-216ENST00000637968 C10orf105Q8TEF2 133 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 DSCR8Q96T75 97 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 ATG2AQ2TAZ0 1938 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 RIF1Q5UIP0 2472 aaKnown RBP4.6□□□□□ -1.67
SCN1A-216ENST00000637968 FAM186AA6NE01 2351 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 TRAV17A0A0B4J275 112 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 FKBP2P26885 142 aaKnown RBP4.6□□□□□ -1.67
SCN1A-216ENST00000637968 VMA21Q3ZAQ7 101 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 Q8IYB0 196 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 RNF152Q8N8N0 203 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 COX14Q96I36 57 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 SCNM1Q9BWG6 230 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 OBSL1O75147 1896 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 IGKV1-27A0A075B6S5 117 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 IGKV1-6A0A0C4DH72 117 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 PEMTQ9UBM1 199 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 HCFC1P51610 2035 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 NCOR1O75376 2440 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 TEX49A0A1B0GTD5 131 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 KNCNA6PVL3 124 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 FAM104BQ5XKR9 115 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 WFDC11Q8NEX6 87 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 SCGB3A1Q96QR1 104 aa4.6□□□□□ -1.67
SCN1A-216ENST00000637968 H3BTX0 84 aa4.59□□□□□ -1.67
SCN1A-216ENST00000637968 PLAUP00749 431 aa4.59□□□□□ -1.67
SCN1A-216ENST00000637968 CFC1BP0CG36 223 aa4.59□□□□□ -1.67
SCN1A-216ENST00000637968 CFC1P0CG37 223 aa4.59□□□□□ -1.67
SCN1A-216ENST00000637968 HOXA4Q00056 320 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-216ENST00000637968 PAPPA-AS1Q5QFB9 102 aa4.59□□□□□ -1.67
SCN1A-216ENST00000637968 DPH3Q96FX2 82 aa4.59□□□□□ -1.67
SCN1A-216ENST00000637968 TMEM243Q9BU79 118 aa4.59□□□□□ -1.67
SCN1A-216ENST00000637968 MLST8Q9BVC4 326 aa4.59□□□□□ -1.67
SCN1A-216ENST00000637968 PLXNA4Q9HCM2 1894 aa4.59□□□□□ -1.67
SCN1A-216ENST00000637968 ICE1Q9Y2F5 2266 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms