RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 A0A1W2PS18 150 aa14.04□□□□□ -0.16
CLN3-254ENST00000637050 A8MWP6 167 aa14.04□□□□□ -0.16
CLN3-254ENST00000637050 LINC01619G3V211 115 aa14.04□□□□□ -0.16
CLN3-254ENST00000637050 GALR1P47211 349 aa14.04□□□□□ -0.16
CLN3-254ENST00000637050 KLF5Q13887 457 aaPredicted RBP14.04□□□□□ -0.16
CLN3-254ENST00000637050 LYPD1Q8N2G4 141 aa14.04□□□□□ -0.16
CLN3-254ENST00000637050 C11orf44Q8N8P7 122 aa14.04□□□□□ -0.16
CLN3-254ENST00000637050 RPUSD4Q96CM3 377 aaKnown RBP14.04□□□□□ -0.16
CLN3-254ENST00000637050 CITED2Q99967 270 aaPredicted RBP14.04□□□□□ -0.16
CLN3-254ENST00000637050 TCEAL7Q9BRU2 100 aa14.04□□□□□ -0.16
CLN3-254ENST00000637050 OTORQ9NRC9 128 aa14.04□□□□□ -0.16
CLN3-254ENST00000637050 PGPA6NDG6 321 aa14.04□□□□□ -0.16
CLN3-254ENST00000637050 SLC17A3O00476 420 aa14.04□□□□□ -0.16
CLN3-254ENST00000637050 SSTP61278 116 aa14.04□□□□□ -0.16
CLN3-254ENST00000637050 BTN1A1Q13410 526 aa14.04□□□□□ -0.16
CLN3-254ENST00000637050 FAM74A3Q4VXF1 159 aa14.04□□□□□ -0.16
CLN3-254ENST00000637050 HIST2H2BDQ6DRA6 164 aa14.04□□□□□ -0.16
CLN3-254ENST00000637050 SIGLEC15Q6ZMC9 328 aa14.04□□□□□ -0.16
CLN3-254ENST00000637050 C1QL4Q86Z23 238 aa14.04□□□□□ -0.16
CLN3-254ENST00000637050 OR11H1Q8NG94 326 aa14.04□□□□□ -0.16
CLN3-254ENST00000637050 OR1N2Q8NGR9 330 aa14.04□□□□□ -0.16
CLN3-254ENST00000637050 GRAMD2BQ96HH9 432 aa14.04□□□□□ -0.16
CLN3-254ENST00000637050 SMPXQ9UHP9 88 aa14.04□□□□□ -0.16
CLN3-254ENST00000637050 TSSC4Q9Y5U2 329 aaPredicted RBP14.04□□□□□ -0.16
CLN3-254ENST00000637050 ZNF727A8MUV8 499 aa14.03□□□□□ -0.16
CLN3-254ENST00000637050 ZNF253O75346 499 aa14.03□□□□□ -0.16
CLN3-254ENST00000637050 SNAPINO95295 136 aa14.03□□□□□ -0.16
CLN3-254ENST00000637050 SYNJ2BPP57105 145 aa14.03□□□□□ -0.16
CLN3-254ENST00000637050 CLRN3Q8NCR9 226 aa14.03□□□□□ -0.16
CLN3-254ENST00000637050 SMIM7Q9BQ49 75 aa14.03□□□□□ -0.16
CLN3-254ENST00000637050 DERL1Q9BUN8 251 aa14.03□□□□□ -0.16
CLN3-254ENST00000637050 A0A1B0GUS0 222 aa14.02□□□□□ -0.16
CLN3-254ENST00000637050 TMEM213A2RRL7 107 aa14.02□□□□□ -0.16
CLN3-254ENST00000637050 ZNF674Q2M3X9 581 aa14.02□□□□□ -0.16
CLN3-254ENST00000637050 C8orf86Q6ZUL3 223 aa14.02□□□□□ -0.16
CLN3-254ENST00000637050 C5orf17Q8NAS9 161 aa14.02□□□□□ -0.16
CLN3-254ENST00000637050 C2CD4CQ8TF44 421 aa14.02□□□□□ -0.16
CLN3-254ENST00000637050 DPF1Q92782 380 aa14.02□□□□□ -0.16
CLN3-254ENST00000637050 NIPSNAP3BQ9BS92 247 aa14.02□□□□□ -0.16
CLN3-254ENST00000637050 RHPN1-AS1Q9BWJ2 59 aa14.02□□□□□ -0.16
CLN3-254ENST00000637050 ZNF785A8K8V0 405 aa14.01□□□□□ -0.17
CLN3-254ENST00000637050 CHEK1O14757 476 aa14.01□□□□□ -0.17
CLN3-254ENST00000637050 SLC25A5P05141 298 aaKnown RBP14.01□□□□□ -0.17
CLN3-254ENST00000637050 SLURP1P55000 103 aa14.01□□□□□ -0.17
CLN3-254ENST00000637050 EXOC3-AS1Q8N2X6 119 aa14.01□□□□□ -0.17
CLN3-254ENST00000637050 EPDR1Q9UM22 224 aa14.01□□□□□ -0.17
CLN3-254ENST00000637050 PSG9Q00887 426 aa14.01□□□□□ -0.17
CLN3-254ENST00000637050 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.01□□□□□ -0.17
CLN3-254ENST00000637050 HIST1H2BAQ96A08 127 aa14.01□□□□□ -0.17
CLN3-254ENST00000637050 C12orf57Q99622 126 aa14.01□□□□□ -0.17
CLN3-254ENST00000637050 A0A1W2PRX2 142 aa14□□□□□ -0.17
CLN3-254ENST00000637050 PEX7O00628 323 aa14□□□□□ -0.17
CLN3-254ENST00000637050 GATCO43716 136 aaKnown RBP14□□□□□ -0.17
CLN3-254ENST00000637050 EDN2P20800 178 aa14□□□□□ -0.17
CLN3-254ENST00000637050 MEOX2P50222 304 aa14□□□□□ -0.17
CLN3-254ENST00000637050 ATRAIDQ6UW56 229 aa14□□□□□ -0.17
CLN3-254ENST00000637050 RAX2Q96IS3 184 aa14□□□□□ -0.17
CLN3-254ENST00000637050 DUX3Q96PT4 197 aa14□□□□□ -0.17
CLN3-254ENST00000637050 SDF2L1Q9HCN8 221 aa14□□□□□ -0.17
CLN3-254ENST00000637050 NAT8Q9UHE5 227 aa14□□□□□ -0.17
CLN3-254ENST00000637050 GNG5P63218 68 aa13.99□□□□□ -0.17
CLN3-254ENST00000637050 FHL3Q13643 280 aa13.99□□□□□ -0.17
CLN3-254ENST00000637050 TMEM241Q24JQ0 296 aa13.99□□□□□ -0.17
CLN3-254ENST00000637050 TVP23CQ96ET8 276 aa13.99□□□□□ -0.17
CLN3-254ENST00000637050 AAMDCQ9H7C9 122 aa13.99□□□□□ -0.17
CLN3-254ENST00000637050 ZNF331Q9NQX6 463 aaPredicted RBP13.99□□□□□ -0.17
CLN3-254ENST00000637050 BMI1P35226 326 aa13.98□□□□□ -0.17
CLN3-254ENST00000637050 RPL35P42766 123 aaKnown RBP13.98□□□□□ -0.17
CLN3-254ENST00000637050 KRTAP10-3P60369 221 aa13.98□□□□□ -0.17
CLN3-254ENST00000637050 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.98□□□□□ -0.17
CLN3-254ENST00000637050 ATG101Q9BSB4 218 aa13.98□□□□□ -0.17
CLN3-254ENST00000637050 TRBV20OR9-2A0A075B6H5 130 aa13.98□□□□□ -0.17
CLN3-254ENST00000637050 HELTA6NFD8 242 aa13.98□□□□□ -0.17
CLN3-254ENST00000637050 C2orf70A6NJV1 201 aa13.98□□□□□ -0.17
CLN3-254ENST00000637050 ADARB2-AS1A8MUL3 147 aa13.98□□□□□ -0.17
CLN3-254ENST00000637050 TCRAP04437 139 aa13.98□□□□□ -0.17
CLN3-254ENST00000637050 PNRC1Q12796 327 aaPredicted RBP13.98□□□□□ -0.17
CLN3-254ENST00000637050 CMTM2Q8TAZ6 248 aa13.98□□□□□ -0.17
CLN3-254ENST00000637050 SLC50A1Q9BRV3 221 aa13.98□□□□□ -0.17
CLN3-254ENST00000637050 C9JCJ5 164 aa13.97□□□□□ -0.17
CLN3-254ENST00000637050 CCL24O00175 119 aa13.97□□□□□ -0.17
CLN3-254ENST00000637050 CBLN1P23435 193 aa13.97□□□□□ -0.17
CLN3-254ENST00000637050 AKR1C3P42330 323 aa13.97□□□□□ -0.17
CLN3-254ENST00000637050 AWAT1Q58HT5 328 aa13.97□□□□□ -0.17
CLN3-254ENST00000637050 ARL6IP6Q8N6S5 226 aa13.97□□□□□ -0.17
CLN3-254ENST00000637050 DLX4Q92988 240 aaPredicted RBP13.97□□□□□ -0.17
CLN3-254ENST00000637050 SAV1Q9H4B6 383 aaPredicted RBP13.97□□□□□ -0.17
CLN3-254ENST00000637050 M0R036 132 aa13.96□□□□□ -0.17
CLN3-254ENST00000637050 CNN1P51911 297 aaKnown RBP13.96□□□□□ -0.17
CLN3-254ENST00000637050 FOXL1Q12952 345 aa13.96□□□□□ -0.17
CLN3-254ENST00000637050 LINC00479Q96M42 142 aa13.96□□□□□ -0.17
CLN3-254ENST00000637050 KLF12Q9Y4X4 402 aa13.96□□□□□ -0.17
CLN3-254ENST00000637050 M0R3E3 92 aa13.95□□□□□ -0.18
CLN3-254ENST00000637050 TAS2R60P59551 318 aa13.95□□□□□ -0.18
CLN3-254ENST00000637050 OR9G4Q8NGQ1 327 aa13.95□□□□□ -0.18
CLN3-254ENST00000637050 BIN3Q9NQY0 253 aa13.95□□□□□ -0.18
CLN3-254ENST00000637050 PEMTQ9UBM1 199 aa13.95□□□□□ -0.18
CLN3-254ENST00000637050 RPH3ALQ9UNE2 315 aa13.95□□□□□ -0.18
CLN3-254ENST00000637050 TRAV8-2A0A0B4J237 113 aa13.95□□□□□ -0.18
CLN3-254ENST00000637050 FOLR2P14207 255 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms