RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 NBDYA0A0U1RRE5 68 aa11.31□□□□□ -0.6
CLN3-246ENST00000636228 METTL15P1P0C7V9 234 aa11.31□□□□□ -0.6
CLN3-246ENST00000636228 TSPOP30536 169 aa11.31□□□□□ -0.6
CLN3-246ENST00000636228 B2MP61769 119 aa11.31□□□□□ -0.6
CLN3-246ENST00000636228 KIR3DS1Q14943 382 aa11.31□□□□□ -0.6
CLN3-246ENST00000636228 S100ZQ8WXG8 99 aa11.31□□□□□ -0.6
CLN3-246ENST00000636228 SDHCQ99643 169 aaPredicted RBP11.31□□□□□ -0.6
CLN3-246ENST00000636228 PARD6GQ9BYG4 376 aaPredicted RBP11.31□□□□□ -0.6
CLN3-246ENST00000636228 LINC00854A0A1B0GVQ3 168 aa11.3□□□□□ -0.6
CLN3-246ENST00000636228 CBY3A6NI87 242 aa11.3□□□□□ -0.6
CLN3-246ENST00000636228 ATP5G1P05496 136 aa11.3□□□□□ -0.6
CLN3-246ENST00000636228 ANXA7P20073 488 aaKnown RBP11.3□□□□□ -0.6
CLN3-246ENST00000636228 ATP5G3P48201 142 aa11.3□□□□□ -0.6
CLN3-246ENST00000636228 FAM3BP58499 235 aaPredicted RBP11.3□□□□□ -0.6
CLN3-246ENST00000636228 PLP1P60201 277 aa11.3□□□□□ -0.6
CLN3-246ENST00000636228 SLC38A11Q08AI6 406 aa11.3□□□□□ -0.6
CLN3-246ENST00000636228 RNF141Q8WVD5 230 aa11.3□□□□□ -0.6
CLN3-246ENST00000636228 RPUSD4Q96CM3 377 aaKnown RBP11.3□□□□□ -0.6
CLN3-246ENST00000636228 SMIM8Q96KF7 97 aa11.3□□□□□ -0.6
CLN3-246ENST00000636228 NOP10Q9NPE3 64 aaKnown RBP11.3□□□□□ -0.6
CLN3-246ENST00000636228 LINC00588Q9Y4M8 146 aa11.3□□□□□ -0.6
CLN3-246ENST00000636228 HSPG2P98160 4391 aa11.3□□□□□ -0.6
CLN3-246ENST00000636228 LRP1BQ9NZR2 4599 aa11.3□□□□□ -0.6
CLN3-246ENST00000636228 A0A087X0K7 114 aa11.29□□□□□ -0.6
CLN3-246ENST00000636228 H3BTX0 84 aa11.29□□□□□ -0.6
CLN3-246ENST00000636228 MRPS12O15235 138 aaKnown RBP11.29□□□□□ -0.6
CLN3-246ENST00000636228 SCGB1D2O95969 90 aa11.29□□□□□ -0.6
CLN3-246ENST00000636228 TAS2R60P59551 318 aa11.29□□□□□ -0.6
CLN3-246ENST00000636228 SELENOTP62341 195 aa11.29□□□□□ -0.6
CLN3-246ENST00000636228 TMEM14EPQ6UXP3 125 aa11.29□□□□□ -0.6
CLN3-246ENST00000636228 C6orf223Q8N319 242 aa11.29□□□□□ -0.6
CLN3-246ENST00000636228 ARV1Q9H2C2 271 aa11.29□□□□□ -0.6
CLN3-246ENST00000636228 NPVFQ9HCQ7 196 aa11.29□□□□□ -0.6
CLN3-246ENST00000636228 NACAE9PAV3 2078 aa11.29□□□□□ -0.6
CLN3-246ENST00000636228 C16orf90A8MZG2 172 aa11.28□□□□□ -0.6
CLN3-246ENST00000636228 PRAC2D3DTV9 90 aa11.28□□□□□ -0.6
CLN3-246ENST00000636228 OR4E1P0C645 316 aa11.28□□□□□ -0.6
CLN3-246ENST00000636228 UBE2MP61081 183 aaKnown RBP11.28□□□□□ -0.6
CLN3-246ENST00000636228 DLK1P80370 383 aa11.28□□□□□ -0.6
CLN3-246ENST00000636228 ARL16Q0P5N6 197 aa11.28□□□□□ -0.6
CLN3-246ENST00000636228 BAK1Q16611 211 aa11.28□□□□□ -0.6
CLN3-246ENST00000636228 C16orf74Q96GX8 76 aa11.28□□□□□ -0.6
CLN3-246ENST00000636228 TIMM8BQ9Y5J9 83 aaPredicted RBP11.28□□□□□ -0.6
CLN3-246ENST00000636228 NDUFB6O95139 128 aa11.27□□□□□ -0.61
CLN3-246ENST00000636228 CDKN1BP46527 198 aa11.27□□□□□ -0.61
CLN3-246ENST00000636228 CCL18P55774 89 aa11.27□□□□□ -0.61
CLN3-246ENST00000636228 OR5I1Q13606 314 aa11.27□□□□□ -0.61
CLN3-246ENST00000636228 TMEM256Q8N2U0 113 aa11.27□□□□□ -0.61
CLN3-246ENST00000636228 OR10P1Q8NGE3 313 aa11.27□□□□□ -0.61
CLN3-246ENST00000636228 DEDD2Q8WXF8 326 aa11.27□□□□□ -0.61
CLN3-246ENST00000636228 GSKIPQ9P0R6 139 aa11.27□□□□□ -0.61
CLN3-246ENST00000636228 J3KRW8 73 aa11.26□□□□□ -0.61
CLN3-246ENST00000636228 INPP1P49441 399 aa11.26□□□□□ -0.61
CLN3-246ENST00000636228 CLINT1Q14677 625 aa11.26□□□□□ -0.61
CLN3-246ENST00000636228 ZNF846Q147U1 533 aa11.26□□□□□ -0.61
CLN3-246ENST00000636228 IAH1Q2TAA2 248 aaPredicted RBP11.26□□□□□ -0.61
CLN3-246ENST00000636228 C4orf46Q504U0 113 aa11.26□□□□□ -0.61
CLN3-246ENST00000636228 MORN5Q5VZ52 161 aa11.26□□□□□ -0.61
CLN3-246ENST00000636228 TEPPQ6URK8 271 aa11.26□□□□□ -0.61
CLN3-246ENST00000636228 SSX7Q7RTT5 188 aa11.26□□□□□ -0.61
CLN3-246ENST00000636228 LINC00305Q7Z4B0 112 aa11.26□□□□□ -0.61
CLN3-246ENST00000636228 CCDC32Q9BV29 185 aa11.26□□□□□ -0.61
CLN3-246ENST00000636228 ZNF331Q9NQX6 463 aaPredicted RBP11.26□□□□□ -0.61
CLN3-246ENST00000636228 MGAT4CQ9UBM8 478 aa11.26□□□□□ -0.61
CLN3-246ENST00000636228 A0A0J9YY99 117 aa11.25□□□□□ -0.61
CLN3-246ENST00000636228 SLC17A3O00476 420 aa11.25□□□□□ -0.61
CLN3-246ENST00000636228 GOSR2O14653 212 aa11.25□□□□□ -0.61
CLN3-246ENST00000636228 AGPAT2O15120 278 aa11.25□□□□□ -0.61
CLN3-246ENST00000636228 IL7P13232 177 aa11.25□□□□□ -0.61
CLN3-246ENST00000636228 RNASE8Q8TDE3 154 aaKnown RBP11.25□□□□□ -0.61
CLN3-246ENST00000636228 TRAV26-1A0A087WT03 109 aa11.24□□□□□ -0.61
CLN3-246ENST00000636228 H7BYZ3 331 aa11.24□□□□□ -0.61
CLN3-246ENST00000636228 K7EPK0 472 aa11.24□□□□□ -0.61
CLN3-246ENST00000636228 GFI1BQ5VTD9 330 aa11.24□□□□□ -0.61
CLN3-246ENST00000636228 TRIQKQ629K1 86 aa11.24□□□□□ -0.61
CLN3-246ENST00000636228 S100A7AQ86SG5 101 aa11.24□□□□□ -0.61
CLN3-246ENST00000636228 ZBTB8BQ8NAP8 495 aaPredicted RBP11.24□□□□□ -0.61
CLN3-246ENST00000636228 TMEM263Q8WUH6 116 aaKnown RBP11.24□□□□□ -0.61
CLN3-246ENST00000636228 TMEM37Q8WXS4 190 aa11.24□□□□□ -0.61
CLN3-246ENST00000636228 RCL1Q9Y2P8 373 aaKnown RBP11.24□□□□□ -0.61
CLN3-246ENST00000636228 DNAH5Q8TE73 4624 aa11.23□□□□□ -0.61
CLN3-246ENST00000636228 TRAV5A0A0B4J249 113 aa11.23□□□□□ -0.61
CLN3-246ENST00000636228 GAGE12BA1L429 117 aa11.23□□□□□ -0.61
CLN3-246ENST00000636228 C7orf66A4D0T2 115 aa11.23□□□□□ -0.61
CLN3-246ENST00000636228 NAP1L6A6NFF2 107 aa11.23□□□□□ -0.61
CLN3-246ENST00000636228 FNDC10F2Z333 226 aa11.23□□□□□ -0.61
CLN3-246ENST00000636228 H3BQ15 152 aa11.23□□□□□ -0.61
CLN3-246ENST00000636228 COX7A2P2O60397 106 aa11.23□□□□□ -0.61
CLN3-246ENST00000636228 GAGE7O76087 117 aa11.23□□□□□ -0.61
CLN3-246ENST00000636228 GAGE12FP0CL80 117 aa11.23□□□□□ -0.61
CLN3-246ENST00000636228 GAGE12GP0CL81 117 aa11.23□□□□□ -0.61
CLN3-246ENST00000636228 GAGE12IP0CL82 117 aa11.23□□□□□ -0.61
CLN3-246ENST00000636228 HOXA5P20719 270 aa11.23□□□□□ -0.61
CLN3-246ENST00000636228 LCN15Q6UWW0 184 aa11.23□□□□□ -0.61
CLN3-246ENST00000636228 ZNF493Q6ZR52 646 aa11.23□□□□□ -0.61
CLN3-246ENST00000636228 MGST2Q99735 147 aa11.23□□□□□ -0.61
CLN3-246ENST00000636228 Q9H8V8 135 aa11.23□□□□□ -0.61
CLN3-246ENST00000636228 MUC4Q99102 2169 aa11.23□□□□□ -0.61
CLN3-246ENST00000636228 CCSO14618 274 aa11.22□□□□□ -0.61
CLN3-246ENST00000636228 TSC22D2O75157 780 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms