RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 KIR2DL5AQ8N109 375 aa13.33□□□□□ -0.28
CLN3-239ENST00000628023 KIR2DL5BQ8NHK3 375 aa13.33□□□□□ -0.28
CLN3-239ENST00000628023 GNPNAT1Q96EK6 184 aaPredicted RBP13.33□□□□□ -0.28
CLN3-239ENST00000628023 C20orf173Q96LM9 149 aa13.33□□□□□ -0.28
CLN3-239ENST00000628023 SLC50A1Q9BRV3 221 aa13.33□□□□□ -0.28
CLN3-239ENST00000628023 PSMG3Q9BT73 122 aaPredicted RBP13.33□□□□□ -0.28
CLN3-239ENST00000628023 SLC25A2Q9BXI2 301 aa13.33□□□□□ -0.28
CLN3-239ENST00000628023 HRH4Q9H3N8 390 aa13.33□□□□□ -0.28
CLN3-239ENST00000628023 TRAV8-2A0A0B4J237 113 aa13.32□□□□□ -0.28
CLN3-239ENST00000628023 A0A1W2PPV4 95 aa13.32□□□□□ -0.28
CLN3-239ENST00000628023 JTBO76095 146 aa13.32□□□□□ -0.28
CLN3-239ENST00000628023 M6PRP20645 277 aa13.32□□□□□ -0.28
CLN3-239ENST00000628023 TAS2R45P59539 299 aa13.32□□□□□ -0.28
CLN3-239ENST00000628023 RAB2AP61019 212 aa13.32□□□□□ -0.28
CLN3-239ENST00000628023 GUK1Q16774 197 aa13.32□□□□□ -0.28
CLN3-239ENST00000628023 FOXI2Q6ZQN5 318 aa13.32□□□□□ -0.28
CLN3-239ENST00000628023 TRPT1Q86TN4 253 aaKnown RBP13.32□□□□□ -0.28
CLN3-239ENST00000628023 KCNRGQ8N5I3 272 aa13.32□□□□□ -0.28
CLN3-239ENST00000628023 RNF182Q8N6D2 247 aa13.32□□□□□ -0.28
CLN3-239ENST00000628023 ZNF738Q8NE65 137 aa13.32□□□□□ -0.28
CLN3-239ENST00000628023 ARPC5LQ9BPX5 153 aa13.32□□□□□ -0.28
CLN3-239ENST00000628023 CSTL1Q9H114 145 aa13.32□□□□□ -0.28
CLN3-239ENST00000628023 SH3BGRL3Q9H299 93 aa13.32□□□□□ -0.28
CLN3-239ENST00000628023 RETNQ9HD89 108 aa13.32□□□□□ -0.28
CLN3-239ENST00000628023 TMEM14CQ9P0S9 112 aa13.32□□□□□ -0.28
CLN3-239ENST00000628023 A0A0D9SG52 128 aa13.31□□□□□ -0.28
CLN3-239ENST00000628023 KANTRA0A1W2PQU2 76 aa13.31□□□□□ -0.28
CLN3-239ENST00000628023 H3BQ15 152 aa13.31□□□□□ -0.28
CLN3-239ENST00000628023 UBE2CO00762 179 aa13.31□□□□□ -0.28
CLN3-239ENST00000628023 OR7C2O60412 319 aa13.31□□□□□ -0.28
CLN3-239ENST00000628023 CA1P00915 261 aaPredicted RBP13.31□□□□□ -0.28
CLN3-239ENST00000628023 PYYP10082 97 aa13.31□□□□□ -0.28
CLN3-239ENST00000628023 DEFB1P60022 68 aa13.31□□□□□ -0.28
CLN3-239ENST00000628023 KHDC3LQ587J8 217 aa13.31□□□□□ -0.28
CLN3-239ENST00000628023 FAM122CQ6P4D5 195 aa13.31□□□□□ -0.28
CLN3-239ENST00000628023 OR10G4Q8NGN3 311 aa13.31□□□□□ -0.28
CLN3-239ENST00000628023 OR10G9Q8NGN4 311 aa13.31□□□□□ -0.28
CLN3-239ENST00000628023 OR10G7Q8NGN6 311 aa13.31□□□□□ -0.28
CLN3-239ENST00000628023 OR2G3Q8NGZ4 309 aa13.31□□□□□ -0.28
CLN3-239ENST00000628023 SAV1Q9H4B6 383 aaPredicted RBP13.31□□□□□ -0.28
CLN3-239ENST00000628023 RYR3Q15413 4870 aa13.31□□□□□ -0.28
CLN3-239ENST00000628023 PFDN1O60925 122 aa13.3□□□□□ -0.28
CLN3-239ENST00000628023 MBP02144 154 aa13.3□□□□□ -0.28
CLN3-239ENST00000628023 HIST1H1EP10412 219 aaKnown RBP13.3□□□□□ -0.28
CLN3-239ENST00000628023 HLA-DRB4P13762 266 aa13.3□□□□□ -0.28
CLN3-239ENST00000628023 BLNKQ8WV28 456 aa13.3□□□□□ -0.28
CLN3-239ENST00000628023 PAXXQ9BUH6 204 aa13.3□□□□□ -0.28
CLN3-239ENST00000628023 OR51M1Q9H341 326 aa13.3□□□□□ -0.28
CLN3-239ENST00000628023 HLA-DRB4X5D2U9 266 aa13.3□□□□□ -0.28
CLN3-239ENST00000628023 F6UB75 175 aa13.29□□□□□ -0.28
CLN3-239ENST00000628023 H3BMM0 161 aa13.29□□□□□ -0.28
CLN3-239ENST00000628023 SLC17A3O00476 420 aa13.29□□□□□ -0.28
CLN3-239ENST00000628023 IGKV3-20P01619 116 aa13.29□□□□□ -0.28
CLN3-239ENST00000628023 OR10J4P0C629 311 aa13.29□□□□□ -0.28
CLN3-239ENST00000628023 SPP1P10451 314 aa13.29□□□□□ -0.28
CLN3-239ENST00000628023 HLA-DMBP28068 263 aa13.29□□□□□ -0.28
CLN3-239ENST00000628023 SERF2P84101 59 aa13.29□□□□□ -0.28
CLN3-239ENST00000628023 DEFB135Q30KP9 77 aa13.29□□□□□ -0.28
CLN3-239ENST00000628023 GDF5OSQ5U4N7 250 aa13.29□□□□□ -0.28
CLN3-239ENST00000628023 MORN3Q6PF18 240 aaPredicted RBP13.29□□□□□ -0.28
CLN3-239ENST00000628023 OR4B1Q8NGF8 309 aa13.29□□□□□ -0.28
CLN3-239ENST00000628023 FAM167A-AS1Q96KT0 104 aa13.29□□□□□ -0.28
CLN3-239ENST00000628023 ZNF331Q9NQX6 463 aaPredicted RBP13.29□□□□□ -0.28
CLN3-239ENST00000628023 ZNF586Q9NXT0 402 aa13.29□□□□□ -0.28
CLN3-239ENST00000628023 AGRNO00468 2067 aa13.28□□□□□ -0.28
CLN3-239ENST00000628023 TRBV19A0A075B6N1 114 aa13.28□□□□□ -0.28
CLN3-239ENST00000628023 A0A1B0GVG6 124 aa13.28□□□□□ -0.28
CLN3-239ENST00000628023 BCL2L11O43521 198 aa13.28□□□□□ -0.28
CLN3-239ENST00000628023 CDC34P49427 236 aaPredicted RBP13.28□□□□□ -0.28
CLN3-239ENST00000628023 NUTF2P61970 127 aaKnown RBP13.28□□□□□ -0.28
CLN3-239ENST00000628023 UBE2L3P68036 154 aaKnown RBP13.28□□□□□ -0.28
CLN3-239ENST00000628023 PSG3Q16557 428 aa13.28□□□□□ -0.28
CLN3-239ENST00000628023 Q6ZWC4 215 aa13.28□□□□□ -0.28
CLN3-239ENST00000628023 ZNF471Q9BX82 626 aaPredicted RBP13.28□□□□□ -0.28
CLN3-239ENST00000628023 CYTL1Q9NRR1 136 aa13.28□□□□□ -0.28
CLN3-239ENST00000628023 A0A0J9YX75 114 aa13.27□□□□□ -0.29
CLN3-239ENST00000628023 ZNF253O75346 499 aa13.27□□□□□ -0.29
CLN3-239ENST00000628023 EIF3GO75821 320 aaKnown RBP eCLIP13.27□□□□□ -0.29
CLN3-239ENST00000628023 C1QBP02746 253 aa13.27□□□□□ -0.29
CLN3-239ENST00000628023 PDE6HQ13956 83 aa13.27□□□□□ -0.29
CLN3-239ENST00000628023 TMEM41BQ5BJD5 291 aa13.27□□□□□ -0.29
CLN3-239ENST00000628023 AKR1C8PQ5T2L2 129 aa13.27□□□□□ -0.29
CLN3-239ENST00000628023 RNF141Q8WVD5 230 aa13.27□□□□□ -0.29
CLN3-239ENST00000628023 RPUSD4Q96CM3 377 aaKnown RBP13.27□□□□□ -0.29
CLN3-239ENST00000628023 CLEC5AQ9NY25 188 aa13.27□□□□□ -0.29
CLN3-239ENST00000628023 SPRY2O43597 315 aa13.26□□□□□ -0.29
CLN3-239ENST00000628023 PSG9Q00887 426 aa13.26□□□□□ -0.29
CLN3-239ENST00000628023 ZFAND6Q6FIF0 208 aa13.26□□□□□ -0.29
CLN3-239ENST00000628023 TMUB2Q71RG4 321 aa13.26□□□□□ -0.29
CLN3-239ENST00000628023 FXYD5Q96DB9 178 aa13.26□□□□□ -0.29
CLN3-239ENST00000628023 SAT2Q96F10 170 aaPredicted RBP13.26□□□□□ -0.29
CLN3-239ENST00000628023 AAMDCQ9H7C9 122 aa13.26□□□□□ -0.29
CLN3-239ENST00000628023 TENM2Q9NT68 2774 aa13.25□□□□□ -0.29
CLN3-239ENST00000628023 HMGB3O15347 200 aaKnown RBP13.25□□□□□ -0.29
CLN3-239ENST00000628023 DUSP14O95147 198 aaKnown RBP13.25□□□□□ -0.29
CLN3-239ENST00000628023 NBEAP1P0C6P0 100 aa13.25□□□□□ -0.29
CLN3-239ENST00000628023 C4BPBP20851 252 aa13.25□□□□□ -0.29
CLN3-239ENST00000628023 EIF5AP63241 154 aaKnown RBP13.25□□□□□ -0.29
CLN3-239ENST00000628023 HIST1H1AQ02539 215 aaPredicted RBP13.25□□□□□ -0.29
CLN3-239ENST00000628023 PQLC2Q6ZP29 291 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms