RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 SLC50A1Q9BRV3 221 aa14.16□□□□□ -0.14
SQSTM1-216ENST00000626660 PAXXQ9BUH6 204 aa14.16□□□□□ -0.14
SQSTM1-216ENST00000626660 AGRNO00468 2067 aa14.15□□□□□ -0.14
SQSTM1-216ENST00000626660 RBMY1BA6NDE4 496 aaKnown RBP14.15□□□□□ -0.14
SQSTM1-216ENST00000626660 RBMY1EA6NEQ0 496 aaKnown RBP14.15□□□□□ -0.14
SQSTM1-216ENST00000626660 SNRPCP09234 159 aaKnown RBP14.15□□□□□ -0.14
SQSTM1-216ENST00000626660 RBMY1DP0C7P1 496 aaKnown RBP14.15□□□□□ -0.14
SQSTM1-216ENST00000626660 PYYP10082 97 aa14.15□□□□□ -0.14
SQSTM1-216ENST00000626660 HIST1H1EP10412 219 aaKnown RBP14.15□□□□□ -0.14
SQSTM1-216ENST00000626660 C4BPBP20851 252 aa14.15□□□□□ -0.14
SQSTM1-216ENST00000626660 LGALSLQ3ZCW2 172 aaPredicted RBP14.15□□□□□ -0.14
SQSTM1-216ENST00000626660 TMEM41BQ5BJD5 291 aa14.15□□□□□ -0.14
SQSTM1-216ENST00000626660 AKR1C8PQ5T2L2 129 aa14.15□□□□□ -0.14
SQSTM1-216ENST00000626660 STHQ8IWL8 128 aa14.15□□□□□ -0.14
SQSTM1-216ENST00000626660 OR51M1Q9H341 326 aa14.15□□□□□ -0.14
SQSTM1-216ENST00000626660 RPRMQ9NS64 109 aa14.15□□□□□ -0.14
SQSTM1-216ENST00000626660 H3BQ15 152 aa14.14□□□□□ -0.15
SQSTM1-216ENST00000626660 H3BTX0 84 aa14.14□□□□□ -0.15
SQSTM1-216ENST00000626660 SPP1P10451 314 aa14.14□□□□□ -0.15
SQSTM1-216ENST00000626660 CDC34P49427 236 aaPredicted RBP14.14□□□□□ -0.15
SQSTM1-216ENST00000626660 ACTL10Q5JWF8 245 aa14.14□□□□□ -0.15
SQSTM1-216ENST00000626660 PRKDCP78527 4128 aaKnown RBP14.14□□□□□ -0.15
SQSTM1-216ENST00000626660 KNCNA6PVL3 124 aa14.13□□□□□ -0.15
SQSTM1-216ENST00000626660 TPT1P13693 172 aaKnown RBP14.13□□□□□ -0.15
SQSTM1-216ENST00000626660 RPL35AP18077 110 aaKnown RBP14.13□□□□□ -0.15
SQSTM1-216ENST00000626660 APOC4P55056 127 aa14.13□□□□□ -0.15
SQSTM1-216ENST00000626660 LINC00322Q6ZN03 302 aaPredicted RBP14.13□□□□□ -0.15
SQSTM1-216ENST00000626660 ASCL2Q99929 193 aa14.13□□□□□ -0.15
SQSTM1-216ENST00000626660 ACTR3CQ9C0K3 210 aaPredicted RBP14.13□□□□□ -0.15
SQSTM1-216ENST00000626660 ZNF331Q9NQX6 463 aaPredicted RBP14.13□□□□□ -0.15
SQSTM1-216ENST00000626660 ZNF586Q9NXT0 402 aa14.13□□□□□ -0.15
SQSTM1-216ENST00000626660 CLEC5AQ9NY25 188 aa14.13□□□□□ -0.15
SQSTM1-216ENST00000626660 TRBV19A0A075B6N1 114 aa14.12□□□□□ -0.15
SQSTM1-216ENST00000626660 TRAV8-2A0A0B4J237 113 aa14.12□□□□□ -0.15
SQSTM1-216ENST00000626660 ZNF253O75346 499 aa14.12□□□□□ -0.15
SQSTM1-216ENST00000626660 UBE2L3P68036 154 aaKnown RBP14.12□□□□□ -0.15
SQSTM1-216ENST00000626660 PDE6HQ13956 83 aa14.12□□□□□ -0.15
SQSTM1-216ENST00000626660 PSG3Q16557 428 aa14.12□□□□□ -0.15
SQSTM1-216ENST00000626660 HAGHQ16775 308 aa14.12□□□□□ -0.15
SQSTM1-216ENST00000626660 IGFL4Q6B9Z1 124 aa14.12□□□□□ -0.15
SQSTM1-216ENST00000626660 EBLN2Q6P2I7 272 aa14.12□□□□□ -0.15
SQSTM1-216ENST00000626660 PQLC2Q6ZP29 291 aa14.12□□□□□ -0.15
SQSTM1-216ENST00000626660 FOXI2Q6ZQN5 318 aa14.12□□□□□ -0.15
SQSTM1-216ENST00000626660 SBSPONQ8IVN8 264 aa14.12□□□□□ -0.15
SQSTM1-216ENST00000626660 BAP18Q8IXM2 172 aa14.12□□□□□ -0.15
SQSTM1-216ENST00000626660 RPP25LQ8N5L8 163 aaKnown RBP14.12□□□□□ -0.15
SQSTM1-216ENST00000626660 RNF182Q8N6D2 247 aa14.12□□□□□ -0.15
SQSTM1-216ENST00000626660 ZNF738Q8NE65 137 aa14.12□□□□□ -0.15
SQSTM1-216ENST00000626660 BLNKQ8WV28 456 aa14.12□□□□□ -0.15
SQSTM1-216ENST00000626660 RNF141Q8WVD5 230 aa14.12□□□□□ -0.15
SQSTM1-216ENST00000626660 C20orf173Q96LM9 149 aa14.12□□□□□ -0.15
SQSTM1-216ENST00000626660 KIR2DL5BA0A0G2JN68 375 aa14.11□□□□□ -0.15
SQSTM1-216ENST00000626660 KIR2DL5BA0A0G2JPC4 375 aa14.11□□□□□ -0.15
SQSTM1-216ENST00000626660 SLC17A3O00476 420 aa14.11□□□□□ -0.15
SQSTM1-216ENST00000626660 OR10J4P0C629 311 aa14.11□□□□□ -0.15
SQSTM1-216ENST00000626660 NBEAP1P0C6P0 100 aa14.11□□□□□ -0.15
SQSTM1-216ENST00000626660 SEC11BP0C7V7 166 aa14.11□□□□□ -0.15
SQSTM1-216ENST00000626660 PSG9Q00887 426 aa14.11□□□□□ -0.15
SQSTM1-216ENST00000626660 KIR2DL5AQ8N109 375 aa14.11□□□□□ -0.15
SQSTM1-216ENST00000626660 KIR2DL5BQ8NHK3 375 aa14.11□□□□□ -0.15
SQSTM1-216ENST00000626660 RAB24Q969Q5 203 aa14.11□□□□□ -0.15
SQSTM1-216ENST00000626660 SAT2Q96F10 170 aaPredicted RBP14.11□□□□□ -0.15
SQSTM1-216ENST00000626660 NHLRC4P0CG21 123 aaPredicted RBP14.1□□□□□ -0.15
SQSTM1-216ENST00000626660 HLA-DRB4P13762 266 aa14.1□□□□□ -0.15
SQSTM1-216ENST00000626660 C9orf62Q8N4C0 152 aa14.1□□□□□ -0.15
SQSTM1-216ENST00000626660 STOML3Q8TAV4 291 aa14.1□□□□□ -0.15
SQSTM1-216ENST00000626660 FXYD5Q96DB9 178 aa14.1□□□□□ -0.15
SQSTM1-216ENST00000626660 SAV1Q9H4B6 383 aaPredicted RBP14.1□□□□□ -0.15
SQSTM1-216ENST00000626660 HLA-DRB4X5D2U9 266 aa14.1□□□□□ -0.15
SQSTM1-216ENST00000626660 HMGB3O15347 200 aaKnown RBP14.09□□□□□ -0.15
SQSTM1-216ENST00000626660 EIF3GO75821 320 aaKnown RBP eCLIP14.09□□□□□ -0.15
SQSTM1-216ENST00000626660 HLA-DMBP28068 263 aa14.09□□□□□ -0.15
SQSTM1-216ENST00000626660 EIF5AL1Q6IS14 154 aaKnown RBP14.09□□□□□ -0.15
SQSTM1-216ENST00000626660 TRPT1Q86TN4 253 aaKnown RBP14.09□□□□□ -0.15
SQSTM1-216ENST00000626660 SLC51BQ86UW2 128 aa14.09□□□□□ -0.15
SQSTM1-216ENST00000626660 ZNF503Q96F45 646 aa14.09□□□□□ -0.15
SQSTM1-216ENST00000626660 AAMDCQ9H7C9 122 aa14.09□□□□□ -0.15
SQSTM1-216ENST00000626660 CTXND1A0A1B0GTU2 59 aa14.08□□□□□ -0.16
SQSTM1-216ENST00000626660 UMAD1C9J7I0 102 aa14.08□□□□□ -0.16
SQSTM1-216ENST00000626660 H3BMM0 161 aa14.08□□□□□ -0.16
SQSTM1-216ENST00000626660 UBE2CO00762 179 aa14.08□□□□□ -0.16
SQSTM1-216ENST00000626660 STAG3L2P0CL84 134 aa14.08□□□□□ -0.16
SQSTM1-216ENST00000626660 STAG3L3P0CL85 134 aa14.08□□□□□ -0.16
SQSTM1-216ENST00000626660 ARL14EPLP0DKL9 152 aa14.08□□□□□ -0.16
SQSTM1-216ENST00000626660 DEFB1P60022 68 aa14.08□□□□□ -0.16
SQSTM1-216ENST00000626660 RPUSD4Q96CM3 377 aaKnown RBP14.08□□□□□ -0.16
SQSTM1-216ENST00000626660 CSTL1Q9H114 145 aa14.08□□□□□ -0.16
SQSTM1-216ENST00000626660 ZMAT4Q9H898 229 aa14.08□□□□□ -0.16
SQSTM1-216ENST00000626660 A0A0J9YX75 114 aa14.07□□□□□ -0.16
SQSTM1-216ENST00000626660 DUSP14O95147 198 aaKnown RBP14.07□□□□□ -0.16
SQSTM1-216ENST00000626660 NDUFB4O95168 129 aa14.07□□□□□ -0.16
SQSTM1-216ENST00000626660 CXorf1O96002 111 aa14.07□□□□□ -0.16
SQSTM1-216ENST00000626660 NUTF2P61970 127 aaKnown RBP14.07□□□□□ -0.16
SQSTM1-216ENST00000626660 MORN3Q6PF18 240 aaPredicted RBP14.07□□□□□ -0.16
SQSTM1-216ENST00000626660 OR4B1Q8NGF8 309 aa14.07□□□□□ -0.16
SQSTM1-216ENST00000626660 TMED6Q8WW62 240 aa14.07□□□□□ -0.16
SQSTM1-216ENST00000626660 SPATA25Q9BR10 227 aa14.07□□□□□ -0.16
SQSTM1-216ENST00000626660 PRELID1Q9Y255 219 aa14.07□□□□□ -0.16
SQSTM1-216ENST00000626660 F6UB75 175 aa14.06□□□□□ -0.16
SQSTM1-216ENST00000626660 NKX2-5P52952 324 aaPredicted RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms