RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 GGTLC3B5MD39 225 aa9.15□□□□□ -0.94
CLIP1-219ENST00000620786 AZU1P20160 251 aa9.15□□□□□ -0.94
CLIP1-219ENST00000620786 GRNP28799 593 aaKnown RBP9.15□□□□□ -0.94
CLIP1-219ENST00000620786 SSBP2P81877 361 aaPredicted RBP9.15□□□□□ -0.94
CLIP1-219ENST00000620786 DERL1Q9BUN8 251 aa9.15□□□□□ -0.94
CLIP1-219ENST00000620786 K7EM74 188 aa9.15□□□□□ -0.94
CLIP1-219ENST00000620786 PAX9P55771 341 aa9.15□□□□□ -0.94
CLIP1-219ENST00000620786 SEC11AP67812 179 aa9.15□□□□□ -0.94
CLIP1-219ENST00000620786 SPCS1Q9Y6A9 102 aa9.15□□□□□ -0.94
CLIP1-219ENST00000620786 ZNF503-AS2A6NEH8 195 aa9.15□□□□□ -0.95
CLIP1-219ENST00000620786 A8MXK9 166 aa9.15□□□□□ -0.95
CLIP1-219ENST00000620786 C17orf58Q2M2W7 97 aa9.15□□□□□ -0.95
CLIP1-219ENST00000620786 FAM90A2PQ658T7 463 aa9.15□□□□□ -0.95
CLIP1-219ENST00000620786 WDR81Q562E7 1941 aa9.15□□□□□ -0.95
CLIP1-219ENST00000620786 PLEKHB2Q96CS7 222 aa9.15□□□□□ -0.95
CLIP1-219ENST00000620786 GAGE12BA1L429 117 aa9.14□□□□□ -0.95
CLIP1-219ENST00000620786 TMEM238C9JI98 176 aa9.14□□□□□ -0.95
CLIP1-219ENST00000620786 GAGE7O76087 117 aa9.14□□□□□ -0.95
CLIP1-219ENST00000620786 GAGE12FP0CL80 117 aa9.14□□□□□ -0.95
CLIP1-219ENST00000620786 GAGE12GP0CL81 117 aa9.14□□□□□ -0.95
CLIP1-219ENST00000620786 GAGE12IP0CL82 117 aa9.14□□□□□ -0.95
CLIP1-219ENST00000620786 MS4A6AQ9H2W1 248 aa9.14□□□□□ -0.95
CLIP1-219ENST00000620786 CACNA1EQ15878 2313 aa9.14□□□□□ -0.95
CLIP1-219ENST00000620786 IGLV1-44P01699 117 aa9.14□□□□□ -0.95
CLIP1-219ENST00000620786 A0A0G2JRQ6 117 aa9.14□□□□□ -0.95
CLIP1-219ENST00000620786 ZNF561-AS1K7EIQ3 104 aa9.14□□□□□ -0.95
CLIP1-219ENST00000620786 NDUFA4O00483 81 aa9.14□□□□□ -0.95
CLIP1-219ENST00000620786 DEFB112Q30KQ8 113 aa9.14□□□□□ -0.95
CLIP1-219ENST00000620786 Q86TA4 180 aa9.14□□□□□ -0.95
CLIP1-219ENST00000620786 DMRTC2Q8IXT2 367 aaPredicted RBP9.14□□□□□ -0.95
CLIP1-219ENST00000620786 TSSC4Q9Y5U2 329 aaPredicted RBP9.14□□□□□ -0.95
CLIP1-219ENST00000620786 INS-IGF2F8WCM5 200 aa9.13□□□□□ -0.95
CLIP1-219ENST00000620786 HOXB4P17483 251 aaPredicted RBP9.13□□□□□ -0.95
CLIP1-219ENST00000620786 TRPT1Q86TN4 253 aaKnown RBP9.13□□□□□ -0.95
CLIP1-219ENST00000620786 SMPXQ9UHP9 88 aa9.13□□□□□ -0.95
CLIP1-219ENST00000620786 IGLV3-9A0A075B6K5 115 aa9.13□□□□□ -0.95
CLIP1-219ENST00000620786 A0A1B0GV72 72 aa9.13□□□□□ -0.95
CLIP1-219ENST00000620786 FNDC10F2Z333 226 aa9.13□□□□□ -0.95
CLIP1-219ENST00000620786 WDR86Q86TI4 376 aa9.13□□□□□ -0.95
CLIP1-219ENST00000620786 SPOCK3Q9BQ16 436 aa9.13□□□□□ -0.95
CLIP1-219ENST00000620786 CLDN16Q9Y5I7 305 aa9.13□□□□□ -0.95
CLIP1-219ENST00000620786 SLX1AQ9BQ83 275 aa9.13□□□□□ -0.95
CLIP1-219ENST00000620786 SNRNP200O75643 2136 aaKnown RBP9.13□□□□□ -0.95
CLIP1-219ENST00000620786 SHISA9B4DS77 424 aa9.13□□□□□ -0.95
CLIP1-219ENST00000620786 IGHV2-5P01817 119 aa9.13□□□□□ -0.95
CLIP1-219ENST00000620786 WT1P19544 449 aaPredicted RBP9.13□□□□□ -0.95
CLIP1-219ENST00000620786 LMO1P25800 156 aa9.13□□□□□ -0.95
CLIP1-219ENST00000620786 YPEL3P61236 119 aaPredicted RBP9.13□□□□□ -0.95
CLIP1-219ENST00000620786 PDE6HQ13956 83 aa9.13□□□□□ -0.95
CLIP1-219ENST00000620786 RPP25LQ8N5L8 163 aaKnown RBP9.13□□□□□ -0.95
CLIP1-219ENST00000620786 ETV2O00321 342 aaPredicted RBP9.13□□□□□ -0.95
CLIP1-219ENST00000620786 NUP35Q8NFH5 326 aa9.13□□□□□ -0.95
CLIP1-219ENST00000620786 FGF16O43320 207 aa9.12□□□□□ -0.95
CLIP1-219ENST00000620786 DMRTA1Q5VZB9 504 aa9.12□□□□□ -0.95
CLIP1-219ENST00000620786 NDUFA4L2Q9NRX3 87 aa9.12□□□□□ -0.95
CLIP1-219ENST00000620786 VPREB3Q9UKI3 123 aa9.12□□□□□ -0.95
CLIP1-219ENST00000620786 SMKR1H3BMG3 65 aa9.12□□□□□ -0.95
CLIP1-219ENST00000620786 H3BUT2 72 aa9.12□□□□□ -0.95
CLIP1-219ENST00000620786 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.12□□□□□ -0.95
CLIP1-219ENST00000620786 ARMS2P0C7Q2 107 aa9.12□□□□□ -0.95
CLIP1-219ENST00000620786 TRBV25-1A0A075B6N4 114 aa9.12□□□□□ -0.95
CLIP1-219ENST00000620786 TRAV9-2A0A087WT02 112 aa9.12□□□□□ -0.95
CLIP1-219ENST00000620786 NDUFS7O75251 213 aa9.12□□□□□ -0.95
CLIP1-219ENST00000620786 IGHV4-59P01825 116 aa9.12□□□□□ -0.95
CLIP1-219ENST00000620786 C8orf49Q96NF6 230 aa9.12□□□□□ -0.95
CLIP1-219ENST00000620786 LIME1Q9H400 295 aa9.12□□□□□ -0.95
CLIP1-219ENST00000620786 ELANEP08246 267 aa9.12□□□□□ -0.95
CLIP1-219ENST00000620786 FHL1Q13642 323 aa9.12□□□□□ -0.95
CLIP1-219ENST00000620786 C5orf30Q96GV9 206 aa9.12□□□□□ -0.95
CLIP1-219ENST00000620786 TSC2P49815 1807 aa9.11□□□□□ -0.95
CLIP1-219ENST00000620786 TRAV12-2A0A075B6T6 113 aa9.11□□□□□ -0.95
CLIP1-219ENST00000620786 LINC01559Q495D7 138 aa9.11□□□□□ -0.95
CLIP1-219ENST00000620786 TMEM14BQ9NUH8 114 aa9.11□□□□□ -0.95
CLIP1-219ENST00000620786 PLXNA4Q9HCM2 1894 aa9.11□□□□□ -0.95
CLIP1-219ENST00000620786 C8orf86Q6ZUL3 223 aa9.11□□□□□ -0.95
CLIP1-219ENST00000620786 TMEM75Q8N9X5 138 aa9.11□□□□□ -0.95
CLIP1-219ENST00000620786 CYTL1Q9NRR1 136 aa9.11□□□□□ -0.95
CLIP1-219ENST00000620786 LAMTOR3Q9UHA4 124 aa9.11□□□□□ -0.95
CLIP1-219ENST00000620786 TRAV8-2A0A0B4J237 113 aa9.11□□□□□ -0.95
CLIP1-219ENST00000620786 TRAV1-1A0A0B4J248 108 aa9.11□□□□□ -0.95
CLIP1-219ENST00000620786 IGKV1-6A0A0C4DH72 117 aa9.11□□□□□ -0.95
CLIP1-219ENST00000620786 RHODO00212 210 aa9.11□□□□□ -0.95
CLIP1-219ENST00000620786 RASL11AQ6T310 242 aa9.11□□□□□ -0.95
CLIP1-219ENST00000620786 SDK2Q58EX2 2172 aa9.11□□□□□ -0.95
CLIP1-219ENST00000620786 IGHV1OR15-1A0A075B7D0 117 aa9.1□□□□□ -0.95
CLIP1-219ENST00000620786 LURAP1LQ8IV03 231 aa9.1□□□□□ -0.95
CLIP1-219ENST00000620786 TMEM158Q8WZ71 300 aa9.1□□□□□ -0.95
CLIP1-219ENST00000620786 NCOR1P1Q9H4R4 102 aa9.1□□□□□ -0.95
CLIP1-219ENST00000620786 ERG28Q9UKR5 140 aa9.1□□□□□ -0.95
CLIP1-219ENST00000620786 KLF2Q9Y5W3 355 aaPredicted RBP9.1□□□□□ -0.95
CLIP1-219ENST00000620786 LEPROTO15243 131 aa9.1□□□□□ -0.95
CLIP1-219ENST00000620786 CGB7P0DN87 165 aa9.1□□□□□ -0.95
CLIP1-219ENST00000620786 Q6ZRM9 215 aa9.1□□□□□ -0.95
CLIP1-219ENST00000620786 LINC01551Q86U37 167 aa9.1□□□□□ -0.95
CLIP1-219ENST00000620786 LINC00311Q8N616 119 aa9.1□□□□□ -0.95
CLIP1-219ENST00000620786 RMI2Q96E14 147 aa9.1□□□□□ -0.95
CLIP1-219ENST00000620786 ATXN8Q156A1 80 aa9.1□□□□□ -0.95
CLIP1-219ENST00000620786 ATRAIDQ6UW56 229 aa9.1□□□□□ -0.95
CLIP1-219ENST00000620786 MRPL27Q9P0M9 148 aaKnown RBP9.1□□□□□ -0.95
CLIP1-219ENST00000620786 TPSG1Q9NRR2 321 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms