RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 MAP1AP78559 2803 aaPredicted RBP12.2□□□□□ -0.46
UPF1-204ENST00000596842 TMEM178BH3BS89 294 aa12.2□□□□□ -0.46
UPF1-204ENST00000596842 TAX1BP3O14907 124 aa12.2□□□□□ -0.46
UPF1-204ENST00000596842 ARF6P62330 175 aa12.2□□□□□ -0.46
UPF1-204ENST00000596842 HES1Q14469 280 aa12.2□□□□□ -0.46
UPF1-204ENST00000596842 IGFL2Q6UWQ7 119 aa12.2□□□□□ -0.46
UPF1-204ENST00000596842 MAP1LC3CQ9BXW4 147 aa12.2□□□□□ -0.46
UPF1-204ENST00000596842 GEMIN7Q9H840 131 aaKnown RBP12.2□□□□□ -0.46
UPF1-204ENST00000596842 RASL11BQ9BPW5 248 aa12.2□□□□□ -0.46
UPF1-204ENST00000596842 IGHV1-24A0A0C4DH33 117 aa12.19□□□□□ -0.46
UPF1-204ENST00000596842 M0R3E3 92 aa12.19□□□□□ -0.46
UPF1-204ENST00000596842 FAM169BQ8N8A8 192 aa12.19□□□□□ -0.46
UPF1-204ENST00000596842 MUC6Q6W4X9 2439 aa12.19□□□□□ -0.46
UPF1-204ENST00000596842 IGHV2-26A0A0B4J1V2 119 aa12.19□□□□□ -0.46
UPF1-204ENST00000596842 A0A0G2JNJ9 132 aa12.19□□□□□ -0.46
UPF1-204ENST00000596842 LY6HO94772 140 aa12.19□□□□□ -0.46
UPF1-204ENST00000596842 IGLV2-23P01705 113 aa12.19□□□□□ -0.46
UPF1-204ENST00000596842 WFDC3Q8IUB2 231 aa12.19□□□□□ -0.46
UPF1-204ENST00000596842 Q9UFV3 132 aa12.19□□□□□ -0.46
UPF1-204ENST00000596842 IGF2RP11717 2491 aa12.19□□□□□ -0.46
UPF1-204ENST00000596842 C2orf70A6NJV1 201 aa12.19□□□□□ -0.46
UPF1-204ENST00000596842 TOMM40O96008 361 aa12.19□□□□□ -0.46
UPF1-204ENST00000596842 PRSS33Q8NF86 280 aa12.19□□□□□ -0.46
UPF1-204ENST00000596842 RPEQ96AT9 228 aa12.19□□□□□ -0.46
UPF1-204ENST00000596842 IGHV3-23P01764 117 aa12.18□□□□□ -0.46
UPF1-204ENST00000596842 CITED1Q99966 193 aa12.18□□□□□ -0.46
UPF1-204ENST00000596842 TMUB1Q9BVT8 246 aa12.18□□□□□ -0.46
UPF1-204ENST00000596842 ZNF292O60281 2723 aa12.18□□□□□ -0.46
UPF1-204ENST00000596842 IGHV1-8P0DP01 117 aa12.18□□□□□ -0.46
UPF1-204ENST00000596842 LOXP28300 417 aaPredicted RBP12.18□□□□□ -0.46
UPF1-204ENST00000596842 ATP5IP56385 69 aaPredicted RBP12.18□□□□□ -0.46
UPF1-204ENST00000596842 TEX36Q5VZQ5 186 aa12.18□□□□□ -0.46
UPF1-204ENST00000596842 PRSS3P2Q8NHM4 247 aa12.18□□□□□ -0.46
UPF1-204ENST00000596842 URB1-AS1Q96HZ7 61 aa12.18□□□□□ -0.46
UPF1-204ENST00000596842 ONECUT1Q9UBC0 465 aa12.18□□□□□ -0.46
UPF1-204ENST00000596842 TEX48A0A1B0GUV7 120 aa12.18□□□□□ -0.46
UPF1-204ENST00000596842 BVES-AS1Q5T3Y7 98 aa12.18□□□□□ -0.46
UPF1-204ENST00000596842 GFRALQ6UXV0 394 aa12.18□□□□□ -0.46
UPF1-204ENST00000596842 RBPMS2Q6ZRY4 209 aaKnown RBP12.18□□□□□ -0.46
UPF1-204ENST00000596842 FAM231DQ6ZW35 169 aa12.18□□□□□ -0.46
UPF1-204ENST00000596842 A0A0G2JLM5 398 aa12.17□□□□□ -0.46
UPF1-204ENST00000596842 ARMS2P0C7Q2 107 aa12.17□□□□□ -0.46
UPF1-204ENST00000596842 SYS1-DBNDD2H3BUS1 97 aa12.17□□□□□ -0.46
UPF1-204ENST00000596842 VSTM5A8MXK1 200 aa12.17□□□□□ -0.46
UPF1-204ENST00000596842 FCGR2BP31994 310 aaPredicted RBP12.17□□□□□ -0.46
UPF1-204ENST00000596842 HSD52Q0P140 79 aa12.17□□□□□ -0.46
UPF1-204ENST00000596842 APOHP02749 345 aaPredicted RBP12.16□□□□□ -0.46
UPF1-204ENST00000596842 TEX45Q8NA69 505 aa12.16□□□□□ -0.46
UPF1-204ENST00000596842 ETDBQ3ZM63 59 aa12.16□□□□□ -0.46
UPF1-204ENST00000596842 FAM71F2Q6NXP2 309 aa12.16□□□□□ -0.46
UPF1-204ENST00000596842 PPP1R27Q86WC6 154 aa12.16□□□□□ -0.46
UPF1-204ENST00000596842 ZNF48Q96MX3 618 aaPredicted RBP12.16□□□□□ -0.46
UPF1-204ENST00000596842 TMEM97Q5BJF2 176 aa12.16□□□□□ -0.46
UPF1-204ENST00000596842 RNASE6Q93091 150 aaKnown RBP12.16□□□□□ -0.46
UPF1-204ENST00000596842 SLC25A39Q9BZJ4 359 aaPredicted RBP12.16□□□□□ -0.46
UPF1-204ENST00000596842 TMEM133Q9H2Q1 129 aa12.16□□□□□ -0.46
UPF1-204ENST00000596842 IL4P05112 153 aa12.15□□□□□ -0.46
UPF1-204ENST00000596842 K7EMI3 77 aa12.15□□□□□ -0.46
UPF1-204ENST00000596842 IGFL4Q6B9Z1 124 aa12.15□□□□□ -0.46
UPF1-204ENST00000596842 PRSS57Q6UWY2 283 aa12.15□□□□□ -0.46
UPF1-204ENST00000596842 LCNL1Q6ZST4 164 aa12.15□□□□□ -0.46
UPF1-204ENST00000596842 FA2HQ7L5A8 372 aa12.15□□□□□ -0.46
UPF1-204ENST00000596842 FMC1Q96HJ9 113 aa12.15□□□□□ -0.46
UPF1-204ENST00000596842 SIGLEC9Q9Y336 463 aa12.15□□□□□ -0.46
UPF1-204ENST00000596842 DCHS2Q6V1P9 2916 aa12.15□□□□□ -0.46
UPF1-204ENST00000596842 C8orf46Q8TAG6 207 aa12.15□□□□□ -0.46
UPF1-204ENST00000596842 FAM57AQ8TBR7 257 aa12.15□□□□□ -0.46
UPF1-204ENST00000596842 WIPF2Q8TF74 440 aaPredicted RBP12.15□□□□□ -0.46
UPF1-204ENST00000596842 ARL3P36405 182 aa12.14□□□□□ -0.47
UPF1-204ENST00000596842 PRR30Q53SZ7 412 aaPredicted RBP12.14□□□□□ -0.47
UPF1-204ENST00000596842 THAP8Q8NA92 274 aa12.14□□□□□ -0.47
UPF1-204ENST00000596842 GP9P14770 177 aa12.14□□□□□ -0.47
UPF1-204ENST00000596842 LGALS7P47929 136 aa12.14□□□□□ -0.47
UPF1-204ENST00000596842 PTPRQQ9UMZ3 2332 aa12.14□□□□□ -0.47
UPF1-204ENST00000596842 A0A1B0GW15 77 aa12.14□□□□□ -0.47
UPF1-204ENST00000596842 A0A1B0GWB2 263 aa12.14□□□□□ -0.47
UPF1-204ENST00000596842 RASL11AQ6T310 242 aa12.14□□□□□ -0.47
UPF1-204ENST00000596842 Q6ZS92 163 aa12.14□□□□□ -0.47
UPF1-204ENST00000596842 Q86TA4 180 aa12.14□□□□□ -0.47
UPF1-204ENST00000596842 OR4F17Q8NGA8 305 aa12.14□□□□□ -0.47
UPF1-204ENST00000596842 ABHD17AQ96GS6 310 aa12.14□□□□□ -0.47
UPF1-204ENST00000596842 FSTL3O95633 263 aa12.13□□□□□ -0.47
UPF1-204ENST00000596842 H3BVH4 76 aa12.13□□□□□ -0.47
UPF1-204ENST00000596842 TGFAP01135 160 aa12.13□□□□□ -0.47
UPF1-204ENST00000596842 HLA-DRB1P01911 266 aa12.13□□□□□ -0.47
UPF1-204ENST00000596842 THBDP07204 575 aa12.13□□□□□ -0.47
UPF1-204ENST00000596842 PPIFP30405 207 aaKnown RBP12.13□□□□□ -0.47
UPF1-204ENST00000596842 ATP5L2Q7Z4Y8 100 aa12.13□□□□□ -0.47
UPF1-204ENST00000596842 BCL6BQ8N143 479 aaPredicted RBP12.13□□□□□ -0.47
UPF1-204ENST00000596842 LINC01560Q8TB33 94 aa12.13□□□□□ -0.47
UPF1-204ENST00000596842 C7orf69Q9H7B7 122 aa12.13□□□□□ -0.47
UPF1-204ENST00000596842 ST20Q9HBF5 79 aa12.13□□□□□ -0.47
UPF1-204ENST00000596842 A0A1B0GXF2 115 aa12.13□□□□□ -0.47
UPF1-204ENST00000596842 OR2J3O76001 311 aa12.13□□□□□ -0.47
UPF1-204ENST00000596842 KIR3DS1Q14943 382 aa12.13□□□□□ -0.47
UPF1-204ENST00000596842 LINC00574Q9H8X3 128 aa12.13□□□□□ -0.47
UPF1-204ENST00000596842 AP5S1Q9NUS5 200 aa12.13□□□□□ -0.47
UPF1-204ENST00000596842 IGHV1-3A0A0C4DH29 117 aa12.12□□□□□ -0.47
UPF1-204ENST00000596842 CD5LO43866 347 aa12.12□□□□□ -0.47
UPF1-204ENST00000596842 KLF5Q13887 457 aaPredicted RBP12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms