RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 SULT1A1P50225 295 aa7.53□□□□□ -1.2
LIG1-213ENST00000596672 ARL16Q0P5N6 197 aa7.53□□□□□ -1.2
LIG1-213ENST00000596672 C12orf74Q32Q52 190 aa7.53□□□□□ -1.2
LIG1-213ENST00000596672 OR8G2PQ6IF36 304 aa7.53□□□□□ -1.2
LIG1-213ENST00000596672 ETFRF1Q6IPR1 90 aa7.53□□□□□ -1.2
LIG1-213ENST00000596672 ALKAL2Q6UX46 152 aa7.53□□□□□ -1.2
LIG1-213ENST00000596672 Q6ZTC4 211 aa7.53□□□□□ -1.2
LIG1-213ENST00000596672 STX12Q86Y82 276 aa7.53□□□□□ -1.2
LIG1-213ENST00000596672 ZNF709Q8N972 641 aa7.53□□□□□ -1.2
LIG1-213ENST00000596672 OR5C1Q8NGR4 320 aa7.53□□□□□ -1.2
LIG1-213ENST00000596672 TRGV9Q99603 122 aa7.53□□□□□ -1.2
LIG1-213ENST00000596672 CACFD1Q9UGQ2 172 aa7.53□□□□□ -1.2
LIG1-213ENST00000596672 RYR1P21817 5038 aa7.53□□□□□ -1.2
LIG1-213ENST00000596672 BORCS7-ASMTA0A0B4J1R7 106 aa7.52□□□□□ -1.21
LIG1-213ENST00000596672 ZFP92A6NM28 416 aa7.52□□□□□ -1.21
LIG1-213ENST00000596672 TEX46H3BTG2 121 aa7.52□□□□□ -1.21
LIG1-213ENST00000596672 IGKV3-20P01619 116 aa7.52□□□□□ -1.21
LIG1-213ENST00000596672 SPP1P10451 314 aa7.52□□□□□ -1.21
LIG1-213ENST00000596672 TPT1P13693 172 aaKnown RBP7.52□□□□□ -1.21
LIG1-213ENST00000596672 HLA-DRB4P13762 266 aa7.52□□□□□ -1.21
LIG1-213ENST00000596672 LYZP61626 148 aa7.52□□□□□ -1.21
LIG1-213ENST00000596672 BAXQ07812 192 aa7.52□□□□□ -1.21
LIG1-213ENST00000596672 IGFL4Q6B9Z1 124 aa7.52□□□□□ -1.21
LIG1-213ENST00000596672 LGALS9CQ6DKI2 356 aa7.52□□□□□ -1.21
LIG1-213ENST00000596672 MORN3Q6PF18 240 aaPredicted RBP7.52□□□□□ -1.21
LIG1-213ENST00000596672 TMEM14EPQ6UXP3 125 aa7.52□□□□□ -1.21
LIG1-213ENST00000596672 BAP18Q8IXM2 172 aa7.52□□□□□ -1.21
LIG1-213ENST00000596672 PCNPQ8WW12 178 aaKnown RBP7.52□□□□□ -1.21
LIG1-213ENST00000596672 PLA2G2EQ9NZK7 142 aa7.52□□□□□ -1.21
LIG1-213ENST00000596672 KLK5Q9Y337 293 aaPredicted RBP7.52□□□□□ -1.21
LIG1-213ENST00000596672 HLA-DRB4X5D2U9 266 aa7.52□□□□□ -1.21
LIG1-213ENST00000596672 TRAV8-2A0A0B4J237 113 aa7.51□□□□□ -1.21
LIG1-213ENST00000596672 LOC105371267A0A1B0GV96 52 aa7.51□□□□□ -1.21
LIG1-213ENST00000596672 PRM2P04554 102 aa7.51□□□□□ -1.21
LIG1-213ENST00000596672 EIF5AP63241 154 aaKnown RBP7.51□□□□□ -1.21
LIG1-213ENST00000596672 RPP30P78346 268 aaKnown RBP7.51□□□□□ -1.21
LIG1-213ENST00000596672 SLC38A11Q08AI6 406 aa7.51□□□□□ -1.21
LIG1-213ENST00000596672 UQCC3Q6UW78 93 aa7.51□□□□□ -1.21
LIG1-213ENST00000596672 ZNF705AQ6ZN79 300 aaPredicted RBP7.51□□□□□ -1.21
LIG1-213ENST00000596672 C1orf158Q8N1D5 194 aa7.51□□□□□ -1.21
LIG1-213ENST00000596672 STOML3Q8TAV4 291 aa7.51□□□□□ -1.21
LIG1-213ENST00000596672 SLC35E1Q96K37 410 aa7.51□□□□□ -1.21
LIG1-213ENST00000596672 SLC35B3Q9H1N7 401 aa7.51□□□□□ -1.21
LIG1-213ENST00000596672 HRH4Q9H3N8 390 aa7.51□□□□□ -1.21
LIG1-213ENST00000596672 SEPSECSQ9HD40 501 aaKnown RBP7.51□□□□□ -1.21
LIG1-213ENST00000596672 PCLOQ9Y6V0 5065 aa7.51□□□□□ -1.21
LIG1-213ENST00000596672 ZNF705FA8MVS1 300 aaPredicted RBP7.5□□□□□ -1.21
LIG1-213ENST00000596672 ZNF705DP0CH99 300 aaPredicted RBP7.5□□□□□ -1.21
LIG1-213ENST00000596672 ZNF705BP0CI00 300 aaPredicted RBP7.5□□□□□ -1.21
LIG1-213ENST00000596672 MIFP14174 115 aa7.5□□□□□ -1.21
LIG1-213ENST00000596672 ATP5IP56385 69 aaPredicted RBP7.5□□□□□ -1.21
LIG1-213ENST00000596672 RAB11AP62491 216 aa7.5□□□□□ -1.21
LIG1-213ENST00000596672 HBG1P69891 147 aa7.5□□□□□ -1.21
LIG1-213ENST00000596672 HBG2P69892 147 aa7.5□□□□□ -1.21
LIG1-213ENST00000596672 FAM74A1Q5RGS3 127 aa7.5□□□□□ -1.21
LIG1-213ENST00000596672 AMTNQ6UX39 209 aa7.5□□□□□ -1.21
LIG1-213ENST00000596672 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa7.5□□□□□ -1.21
LIG1-213ENST00000596672 OR10P1Q8NGE3 313 aa7.5□□□□□ -1.21
LIG1-213ENST00000596672 TMED6Q8WW62 240 aa7.5□□□□□ -1.21
LIG1-213ENST00000596672 NARS2Q96I59 477 aaKnown RBP7.5□□□□□ -1.21
LIG1-213ENST00000596672 LINC00052Q96N35 136 aa7.5□□□□□ -1.21
LIG1-213ENST00000596672 ATP5SQ99766 215 aa7.5□□□□□ -1.21
LIG1-213ENST00000596672 SAV1Q9H4B6 383 aaPredicted RBP7.5□□□□□ -1.21
LIG1-213ENST00000596672 RFNGQ9Y644 331 aa7.5□□□□□ -1.21
LIG1-213ENST00000596672 NACAE9PAV3 2078 aa7.49□□□□□ -1.21
LIG1-213ENST00000596672 RAB19A4D1S5 217 aa7.49□□□□□ -1.21
LIG1-213ENST00000596672 ZNF98A6NK75 572 aa7.49□□□□□ -1.21
LIG1-213ENST00000596672 A8MTW9 85 aa7.49□□□□□ -1.21
LIG1-213ENST00000596672 IGLL5B9A064 214 aa7.49□□□□□ -1.21
LIG1-213ENST00000596672 IFNA5P01569 189 aa7.49□□□□□ -1.21
LIG1-213ENST00000596672 C1orf194Q5T5A4 169 aa7.49□□□□□ -1.21
LIG1-213ENST00000596672 FAM122CQ6P4D5 195 aa7.49□□□□□ -1.21
LIG1-213ENST00000596672 PATE2Q6UY27 113 aa7.49□□□□□ -1.21
LIG1-213ENST00000596672 HSD17B11Q8NBQ5 300 aa7.49□□□□□ -1.21
LIG1-213ENST00000596672 SCGB1C1Q8TD33 95 aa7.49□□□□□ -1.21
LIG1-213ENST00000596672 C2CD4CQ8TF44 421 aa7.49□□□□□ -1.21
LIG1-213ENST00000596672 ARV1Q9H2C2 271 aa7.49□□□□□ -1.21
LIG1-213ENST00000596672 ABCA13Q86UQ4 5058 aa7.49□□□□□ -1.21
LIG1-213ENST00000596672 A0A0J9YX75 114 aa7.48□□□□□ -1.21
LIG1-213ENST00000596672 SCGB2A1O75556 95 aa7.48□□□□□ -1.21
LIG1-213ENST00000596672 SNRPD3P62318 126 aaKnown RBP7.48□□□□□ -1.21
LIG1-213ENST00000596672 ZNF266Q14584 549 aa7.48□□□□□ -1.21
LIG1-213ENST00000596672 ATP6V1FQ16864 119 aa7.48□□□□□ -1.21
LIG1-213ENST00000596672 FAM78BQ5VT40 261 aa7.48□□□□□ -1.21
LIG1-213ENST00000596672 EIF5AL1Q6IS14 154 aaKnown RBP7.48□□□□□ -1.21
LIG1-213ENST00000596672 RNF182Q8N6D2 247 aa7.48□□□□□ -1.21
LIG1-213ENST00000596672 RSG1Q9BU20 258 aa7.48□□□□□ -1.21
LIG1-213ENST00000596672 SH3BGRL3Q9H299 93 aa7.48□□□□□ -1.21
LIG1-213ENST00000596672 DOK5Q9P104 306 aa7.48□□□□□ -1.21
LIG1-213ENST00000596672 IGHV4-4A0A075B6R2 117 aa7.47□□□□□ -1.21
LIG1-213ENST00000596672 UBE2L5PA0A1B0GUS4 154 aa7.47□□□□□ -1.21
LIG1-213ENST00000596672 SMCO3A2RU48 225 aa7.47□□□□□ -1.21
LIG1-213ENST00000596672 H3BRN7 92 aa7.47□□□□□ -1.21
LIG1-213ENST00000596672 MRPS12O15235 138 aaKnown RBP7.47□□□□□ -1.21
LIG1-213ENST00000596672 CRXO43186 299 aaPredicted RBP7.47□□□□□ -1.21
LIG1-213ENST00000596672 ORM2P19652 201 aa7.47□□□□□ -1.21
LIG1-213ENST00000596672 ATP6V0CP27449 155 aa7.47□□□□□ -1.21
LIG1-213ENST00000596672 PSMB3P49720 205 aa7.47□□□□□ -1.21
LIG1-213ENST00000596672 TMEM41BQ5BJD5 291 aa7.47□□□□□ -1.21
LIG1-213ENST00000596672 FOXI2Q6ZQN5 318 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms