RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 TCF24Q7RTU0 167 aa7.89□□□□□ -1.15
LIG3-216ENST00000593099 STHQ8IWL8 128 aa7.89□□□□□ -1.15
LIG3-216ENST00000593099 SYT8Q8NBV8 401 aa7.89□□□□□ -1.15
LIG3-216ENST00000593099 A0A1B0GUS0 222 aa7.89□□□□□ -1.15
LIG3-216ENST00000593099 H0YIZ8 118 aa7.89□□□□□ -1.15
LIG3-216ENST00000593099 DUSP14O95147 198 aaKnown RBP7.89□□□□□ -1.15
LIG3-216ENST00000593099 RNASE2P10153 161 aaKnown RBP7.89□□□□□ -1.15
LIG3-216ENST00000593099 MDKP21741 143 aaPredicted RBP7.89□□□□□ -1.15
LIG3-216ENST00000593099 CRYBB3P26998 211 aa7.89□□□□□ -1.15
LIG3-216ENST00000593099 TRGV9Q99603 122 aa7.89□□□□□ -1.15
LIG3-216ENST00000593099 ABCA2Q9BZC7 2435 aa7.89□□□□□ -1.15
LIG3-216ENST00000593099 PSG1P11464 419 aa7.88□□□□□ -1.15
LIG3-216ENST00000593099 C11orf71Q6IPW1 123 aa7.88□□□□□ -1.15
LIG3-216ENST00000593099 MIR17HGQ75NE6 70 aa7.88□□□□□ -1.15
LIG3-216ENST00000593099 PRDM13Q9H4Q3 707 aa7.88□□□□□ -1.15
LIG3-216ENST00000593099 GAGE12BA1L429 117 aa7.88□□□□□ -1.15
LIG3-216ENST00000593099 A8MWL6 223 aa7.88□□□□□ -1.15
LIG3-216ENST00000593099 FOXL1Q12952 345 aa7.88□□□□□ -1.15
LIG3-216ENST00000593099 FAM159AQ6UWV7 190 aa7.88□□□□□ -1.15
LIG3-216ENST00000593099 SGMS2Q8NHU3 365 aa7.88□□□□□ -1.15
LIG3-216ENST00000593099 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP7.88□□□□□ -1.15
LIG3-216ENST00000593099 A0A0G2JRQ6 117 aa7.88□□□□□ -1.15
LIG3-216ENST00000593099 UBE2CO00762 179 aa7.88□□□□□ -1.15
LIG3-216ENST00000593099 TMEM14EPQ6UXP3 125 aa7.88□□□□□ -1.15
LIG3-216ENST00000593099 MRPL16Q9NX20 251 aaKnown RBP7.88□□□□□ -1.15
LIG3-216ENST00000593099 RNF222A6NCQ9 220 aa7.88□□□□□ -1.15
LIG3-216ENST00000593099 NPSP0C0P6 89 aa7.88□□□□□ -1.15
LIG3-216ENST00000593099 Q6ZRM9 215 aa7.88□□□□□ -1.15
LIG3-216ENST00000593099 FOXC2Q99958 501 aa7.88□□□□□ -1.15
LIG3-216ENST00000593099 SRD5A3Q9H8P0 318 aa7.88□□□□□ -1.15
LIG3-216ENST00000593099 PCNTO95613 3336 aa7.87□□□□□ -1.15
LIG3-216ENST00000593099 MFAP2P55001 183 aa7.87□□□□□ -1.15
LIG3-216ENST00000593099 SYNJ2BPP57105 145 aa7.87□□□□□ -1.15
LIG3-216ENST00000593099 SSBP2P81877 361 aaPredicted RBP7.87□□□□□ -1.15
LIG3-216ENST00000593099 TREML4Q6UXN2 200 aa7.87□□□□□ -1.15
LIG3-216ENST00000593099 HIST1H4GQ99525 98 aa7.87□□□□□ -1.15
LIG3-216ENST00000593099 TMEM14BQ9NUH8 114 aa7.87□□□□□ -1.15
LIG3-216ENST00000593099 AURKAIP1Q9NWT8 199 aaPredicted RBP7.87□□□□□ -1.15
LIG3-216ENST00000593099 OVOL3O00110 214 aa7.87□□□□□ -1.15
LIG3-216ENST00000593099 TNFRSF6BO95407 300 aa7.87□□□□□ -1.15
LIG3-216ENST00000593099 MGPP08493 103 aa7.87□□□□□ -1.15
LIG3-216ENST00000593099 RPS20P60866 119 aaKnown RBP7.87□□□□□ -1.15
LIG3-216ENST00000593099 DGAT2L7PQ6IED9 249 aa7.87□□□□□ -1.15
LIG3-216ENST00000593099 MGST2Q99735 147 aa7.87□□□□□ -1.15
LIG3-216ENST00000593099 FSTL3O95633 263 aa7.87□□□□□ -1.15
LIG3-216ENST00000593099 GAGE1Q13065 139 aa7.87□□□□□ -1.15
LIG3-216ENST00000593099 SIGLEC15Q6ZMC9 328 aa7.87□□□□□ -1.15
LIG3-216ENST00000593099 LYPD6Q86Y78 171 aa7.87□□□□□ -1.15
LIG3-216ENST00000593099 ZNF114Q8NC26 417 aa7.87□□□□□ -1.15
LIG3-216ENST00000593099 NDUFA4L2Q9NRX3 87 aa7.87□□□□□ -1.15
LIG3-216ENST00000593099 PRRC2AP48634 2157 aaKnown RBP7.87□□□□□ -1.15
LIG3-216ENST00000593099 SNURFLB1AK76 121 aa7.87□□□□□ -1.15
LIG3-216ENST00000593099 LINC01619G3V211 115 aa7.87□□□□□ -1.15
LIG3-216ENST00000593099 HSD52Q0P140 79 aa7.87□□□□□ -1.15
LIG3-216ENST00000593099 CYB561D1Q8N8Q1 229 aa7.87□□□□□ -1.15
LIG3-216ENST00000593099 H7C2G1 150 aa7.86□□□□□ -1.15
LIG3-216ENST00000593099 NDUFB8O95169 186 aa7.86□□□□□ -1.15
LIG3-216ENST00000593099 ATOH7Q8N100 152 aa7.86□□□□□ -1.15
LIG3-216ENST00000593099 SIRPDQ9H106 197 aa7.86□□□□□ -1.15
LIG3-216ENST00000593099 ARFGEF3Q5TH69 2177 aa7.86□□□□□ -1.15
LIG3-216ENST00000593099 ANKRD39Q53RE8 183 aa7.86□□□□□ -1.15
LIG3-216ENST00000593099 DAZ1Q9NQZ3 744 aaKnown RBP7.86□□□□□ -1.15
LIG3-216ENST00000593099 PHLDA3Q9Y5J5 127 aa7.86□□□□□ -1.15
LIG3-216ENST00000593099 WIPF3A6NGB9 483 aa7.86□□□□□ -1.15
LIG3-216ENST00000593099 A8MXK9 166 aa7.86□□□□□ -1.15
LIG3-216ENST00000593099 CSN3P07498 182 aa7.86□□□□□ -1.15
LIG3-216ENST00000593099 DEFB121Q5J5C9 76 aa7.86□□□□□ -1.15
LIG3-216ENST00000593099 ANKRD29Q8N6D5 301 aa7.86□□□□□ -1.15
LIG3-216ENST00000593099 Q8N7P7 452 aa7.86□□□□□ -1.15
LIG3-216ENST00000593099 C15orf62A8K5M9 175 aa7.85□□□□□ -1.15
LIG3-216ENST00000593099 M0R3E3 92 aa7.85□□□□□ -1.15
LIG3-216ENST00000593099 IGHV4-31P0DP07 118 aa7.85□□□□□ -1.15
LIG3-216ENST00000593099 CRYBA4P53673 196 aa7.85□□□□□ -1.15
LIG3-216ENST00000593099 GNG5P63218 68 aa7.85□□□□□ -1.15
LIG3-216ENST00000593099 JOSD1Q15040 202 aaPredicted RBP7.85□□□□□ -1.15
LIG3-216ENST00000593099 AGMATQ9BSE5 352 aa7.85□□□□□ -1.15
LIG3-216ENST00000593099 GGTLC1Q9BX51 225 aa7.85□□□□□ -1.15
LIG3-216ENST00000593099 Q9H3A6 140 aa7.85□□□□□ -1.15
LIG3-216ENST00000593099 CHD7Q9P2D1 2997 aa7.85□□□□□ -1.15
LIG3-216ENST00000593099 CD5LO43866 347 aa7.85□□□□□ -1.15
LIG3-216ENST00000593099 FOLR2P14207 255 aa7.85□□□□□ -1.15
LIG3-216ENST00000593099 GAGE2AQ6NT46 116 aa7.85□□□□□ -1.15
LIG3-216ENST00000593099 OR8A1Q8NGG7 326 aa7.85□□□□□ -1.15
LIG3-216ENST00000593099 MCRIP2Q9BUT9 160 aaKnown RBP7.85□□□□□ -1.15
LIG3-216ENST00000593099 RHPN1-AS1Q9BWJ2 59 aa7.85□□□□□ -1.15
LIG3-216ENST00000593099 OTORQ9NRC9 128 aa7.85□□□□□ -1.15
LIG3-216ENST00000593099 NPIPB5A8MRT5 1133 aa7.85□□□□□ -1.15
LIG3-216ENST00000593099 PSMG4Q5JS54 123 aa7.85□□□□□ -1.15
LIG3-216ENST00000593099 LINC01587Q99440 93 aa7.85□□□□□ -1.15
LIG3-216ENST00000593099 CSTL1Q9H114 145 aa7.85□□□□□ -1.15
LIG3-216ENST00000593099 TPSG1Q9NRR2 321 aa7.85□□□□□ -1.15
LIG3-216ENST00000593099 DUX3Q96PT4 197 aa7.85□□□□□ -1.15
LIG3-216ENST00000593099 RPL15P61313 204 aaKnown RBP7.84□□□□□ -1.15
LIG3-216ENST00000593099 IBA57Q5T440 356 aaKnown RBP7.84□□□□□ -1.15
LIG3-216ENST00000593099 TRAV26-1A0A087WT03 109 aa7.84□□□□□ -1.15
LIG3-216ENST00000593099 H3BUA1 57 aa7.84□□□□□ -1.15
LIG3-216ENST00000593099 TMEM160Q9NX00 188 aa7.84□□□□□ -1.15
LIG3-216ENST00000593099 TRAV8-1A0A0A6YYK1 113 aa7.84□□□□□ -1.15
LIG3-216ENST00000593099 FNDC10F2Z333 226 aa7.84□□□□□ -1.15
LIG3-216ENST00000593099 PEX7O00628 323 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms