RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 IGLL5B9A064 214 aa20.17■□□□□ 0.82
LIG3-208ENST00000586407 M0R2Z0 102 aa20.17■□□□□ 0.82
LIG3-208ENST00000586407 SPINK13Q1W4C9 94 aa20.17■□□□□ 0.82
LIG3-208ENST00000586407 S100A7AQ86SG5 101 aa20.17■□□□□ 0.82
LIG3-208ENST00000586407 TRAV5A0A0B4J249 113 aa20.16■□□□□ 0.82
LIG3-208ENST00000586407 PRR20EP86478 221 aa20.16■□□□□ 0.82
LIG3-208ENST00000586407 PRR20CP86479 221 aa20.16■□□□□ 0.82
LIG3-208ENST00000586407 PRR20DP86480 221 aa20.16■□□□□ 0.82
LIG3-208ENST00000586407 PRR20BP86481 221 aa20.16■□□□□ 0.82
LIG3-208ENST00000586407 PRR20AP86496 221 aa20.16■□□□□ 0.82
LIG3-208ENST00000586407 HIST1H1AQ02539 215 aaPredicted RBP20.16■□□□□ 0.82
LIG3-208ENST00000586407 RAB31Q13636 194 aa20.16■□□□□ 0.82
LIG3-208ENST00000586407 OR5AC2Q9NZP5 309 aa20.16■□□□□ 0.82
LIG3-208ENST00000586407 GOLT1BQ9Y3E0 138 aa20.16■□□□□ 0.82
LIG3-208ENST00000586407 C11orf94C9JXX5 98 aa20.15■□□□□ 0.82
LIG3-208ENST00000586407 PRAF2O60831 178 aa20.15■□□□□ 0.82
LIG3-208ENST00000586407 DUSP14O95147 198 aaKnown RBP20.15■□□□□ 0.82
LIG3-208ENST00000586407 FGF7P21781 194 aa20.15■□□□□ 0.82
LIG3-208ENST00000586407 S100A11P31949 105 aa20.15■□□□□ 0.82
LIG3-208ENST00000586407 NHLH2Q02577 135 aa20.15■□□□□ 0.82
LIG3-208ENST00000586407 PSG3Q16557 428 aa20.15■□□□□ 0.82
LIG3-208ENST00000586407 TRAV10A0A0B4J240 114 aa20.14■□□□□ 0.81
LIG3-208ENST00000586407 H0YIZ8 118 aa20.14■□□□□ 0.81
LIG3-208ENST00000586407 SLC17A3O00476 420 aa20.14■□□□□ 0.81
LIG3-208ENST00000586407 HBG1P69891 147 aa20.14■□□□□ 0.81
LIG3-208ENST00000586407 HBG2P69892 147 aa20.14■□□□□ 0.81
LIG3-208ENST00000586407 RPP25LQ8N5L8 163 aaKnown RBP20.14■□□□□ 0.81
LIG3-208ENST00000586407 MARVELD1Q9BSK0 173 aa20.14■□□□□ 0.81
LIG3-208ENST00000586407 RFNGQ9Y644 331 aa20.14■□□□□ 0.81
LIG3-208ENST00000586407 PRM2P04554 102 aa20.13■□□□□ 0.81
LIG3-208ENST00000586407 Q6ZRG5 221 aa20.13■□□□□ 0.81
LIG3-208ENST00000586407 BPIFA4PQ86YQ2 179 aa20.13■□□□□ 0.81
LIG3-208ENST00000586407 BAP18Q8IXM2 172 aa20.13■□□□□ 0.81
LIG3-208ENST00000586407 OR8A1Q8NGG7 326 aa20.13■□□□□ 0.81
LIG3-208ENST00000586407 IGF2BP2-AS1Q96M15 143 aa20.13■□□□□ 0.81
LIG3-208ENST00000586407 DNAJC4Q9NNZ3 241 aa20.13■□□□□ 0.81
LIG3-208ENST00000586407 SLC39A9Q9NUM3 307 aa20.13■□□□□ 0.81
LIG3-208ENST00000586407 APLNQ9ULZ1 77 aa20.13■□□□□ 0.81
LIG3-208ENST00000586407 SMIM9A6NGZ8 99 aa20.12■□□□□ 0.81
LIG3-208ENST00000586407 H3BQ15 152 aa20.12■□□□□ 0.81
LIG3-208ENST00000586407 CRXO43186 299 aaPredicted RBP20.12■□□□□ 0.81
LIG3-208ENST00000586407 B2MP61769 119 aa20.12■□□□□ 0.81
LIG3-208ENST00000586407 RPUSD4Q96CM3 377 aaKnown RBP20.12■□□□□ 0.81
LIG3-208ENST00000586407 NMES1Q9C002 83 aa20.12■□□□□ 0.81
LIG3-208ENST00000586407 ZNF331Q9NQX6 463 aaPredicted RBP20.12■□□□□ 0.81
LIG3-208ENST00000586407 BATF3Q9NR55 127 aa20.12■□□□□ 0.81
LIG3-208ENST00000586407 PLA2G2EQ9NZK7 142 aa20.12■□□□□ 0.81
LIG3-208ENST00000586407 PXMP4Q9Y6I8 212 aa20.12■□□□□ 0.81
LIG3-208ENST00000586407 TRAV12-2A0A075B6T6 113 aa20.11■□□□□ 0.81
LIG3-208ENST00000586407 H2BFSP57053 126 aa20.11■□□□□ 0.81
LIG3-208ENST00000586407 DEFA1P59665 94 aa20.11■□□□□ 0.81
LIG3-208ENST00000586407 DEFA3P59666 94 aa20.11■□□□□ 0.81
LIG3-208ENST00000586407 RHOBP62745 196 aa20.11■□□□□ 0.81
LIG3-208ENST00000586407 LGALS9CQ6DKI2 356 aa20.11■□□□□ 0.81
LIG3-208ENST00000586407 LCN15Q6UWW0 184 aa20.11■□□□□ 0.81
LIG3-208ENST00000586407 RNF24Q9Y225 148 aa20.11■□□□□ 0.81
LIG3-208ENST00000586407 LOC102723971A0A1B0GUV8 181 aa20.1■□□□□ 0.81
LIG3-208ENST00000586407 HBE1P02100 147 aa20.1■□□□□ 0.81
LIG3-208ENST00000586407 IGLC2P0DOY2 106 aa20.1■□□□□ 0.81
LIG3-208ENST00000586407 RPL29P47914 159 aaKnown RBP20.1■□□□□ 0.81
LIG3-208ENST00000586407 ATP6V1FQ16864 119 aa20.1■□□□□ 0.81
LIG3-208ENST00000586407 OR5C1Q8NGR4 320 aa20.1■□□□□ 0.81
LIG3-208ENST00000586407 THAP6Q8TBB0 222 aa20.1■□□□□ 0.81
LIG3-208ENST00000586407 TMEM208Q9BTX3 173 aa20.1■□□□□ 0.81
LIG3-208ENST00000586407 E5RGE8 158 aa20.09■□□□□ 0.81
LIG3-208ENST00000586407 BOLA2-SMG1P6H3BVE0 249 aa20.09■□□□□ 0.81
LIG3-208ENST00000586407 SSNA1O43805 119 aa20.09■□□□□ 0.81
LIG3-208ENST00000586407 INSP01308 110 aa20.09■□□□□ 0.81
LIG3-208ENST00000586407 CLINT1Q14677 625 aa20.09■□□□□ 0.81
LIG3-208ENST00000586407 OR1L4Q8NGR5 311 aa20.09■□□□□ 0.81
LIG3-208ENST00000586407 IGHV4-4A0A075B6R2 117 aa20.08■□□□□ 0.81
LIG3-208ENST00000586407 DEFB131BA0A096LNP1 70 aa20.08■□□□□ 0.81
LIG3-208ENST00000586407 ZNF705GA8MUZ8 300 aaPredicted RBP20.08■□□□□ 0.81
LIG3-208ENST00000586407 PRAC2D3DTV9 90 aa20.08■□□□□ 0.81
LIG3-208ENST00000586407 RLN2P04090 185 aa20.08■□□□□ 0.81
LIG3-208ENST00000586407 SPART-AS1P0CW21 52 aa20.08■□□□□ 0.81
LIG3-208ENST00000586407 CXCL2P19875 107 aa20.08■□□□□ 0.81
LIG3-208ENST00000586407 GCSAMLQ5JQS6 135 aa20.08■□□□□ 0.81
LIG3-208ENST00000586407 FAM222AQ5U5X8 452 aa20.08■□□□□ 0.81
LIG3-208ENST00000586407 SLC50A1Q9BRV3 221 aa20.08■□□□□ 0.81
LIG3-208ENST00000586407 TMEM189A5PLL7 270 aa20.07■□□□□ 0.8
LIG3-208ENST00000586407 RRN3P1Q2M238 152 aa20.07■□□□□ 0.8
LIG3-208ENST00000586407 PFDN5Q99471 154 aa20.07■□□□□ 0.8
LIG3-208ENST00000586407 DKK2Q9UBU2 259 aa20.07■□□□□ 0.8
LIG3-208ENST00000586407 YTHDF2Q9Y5A9 579 aaKnown RBP20.07■□□□□ 0.8
LIG3-208ENST00000586407 EPPK1P58107 5090 aaKnown RBP20.07■□□□□ 0.8
LIG3-208ENST00000586407 AMBPP02760 352 aa20.06■□□□□ 0.8
LIG3-208ENST00000586407 PPP1R1CQ8WVI7 109 aa20.06■□□□□ 0.8
LIG3-208ENST00000586407 NPCDR1Q9BY65 106 aa20.06■□□□□ 0.8
LIG3-208ENST00000586407 PARD6GQ9BYG4 376 aaPredicted RBP20.06■□□□□ 0.8
LIG3-208ENST00000586407 SLC25A31Q9H0C2 315 aa20.06■□□□□ 0.8
LIG3-208ENST00000586407 PPP1R14DQ9NXH3 145 aa20.06■□□□□ 0.8
LIG3-208ENST00000586407 ZNF586Q9NXT0 402 aa20.06■□□□□ 0.8
LIG3-208ENST00000586407 CHAC2Q8WUX2 184 aa20.05■□□□□ 0.8
LIG3-208ENST00000586407 SAT2Q96F10 170 aaPredicted RBP20.05■□□□□ 0.8
LIG3-208ENST00000586407 TCTAP57738 103 aa20.04■□□□□ 0.8
LIG3-208ENST00000586407 CYCSP99999 105 aaKnown RBP20.04■□□□□ 0.8
LIG3-208ENST00000586407 RNF126Q9BV68 326 aa20.04■□□□□ 0.8
LIG3-208ENST00000586407 PYYP10082 97 aa20.02■□□□□ 0.8
LIG3-208ENST00000586407 KIR3DS1Q14943 382 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms