RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 H3BQ15 152 aa11.59□□□□□ -0.55
SS18-215ENST00000580642 ICAM4Q14773 271 aa11.59□□□□□ -0.55
SS18-215ENST00000580642 FAM90A2PQ658T7 463 aa11.59□□□□□ -0.55
SS18-215ENST00000580642 CCDC28AQ8IWP9 274 aa11.59□□□□□ -0.55
SS18-215ENST00000580642 RPUSD4Q96CM3 377 aaKnown RBP11.59□□□□□ -0.55
SS18-215ENST00000580642 AAMDCQ9H7C9 122 aa11.59□□□□□ -0.55
SS18-215ENST00000580642 PRELID1Q9Y255 219 aa11.59□□□□□ -0.55
SS18-215ENST00000580642 SMAD5-AS1Q9Y6J3 95 aa11.59□□□□□ -0.55
SS18-215ENST00000580642 TRAV25A0A0B4J276 109 aa11.58□□□□□ -0.56
SS18-215ENST00000580642 CSN3P07498 182 aa11.58□□□□□ -0.56
SS18-215ENST00000580642 CST9LP1Q5W188 147 aa11.58□□□□□ -0.56
SS18-215ENST00000580642 C12orf54Q6X4T0 127 aa11.58□□□□□ -0.56
SS18-215ENST00000580642 RXFP4Q8TDU9 374 aa11.58□□□□□ -0.56
SS18-215ENST00000580642 HIST1H2BAQ96A08 127 aa11.58□□□□□ -0.56
SS18-215ENST00000580642 MRPL53Q96EL3 112 aaKnown RBP11.58□□□□□ -0.56
SS18-215ENST00000580642 SLC35B3Q9H1N7 401 aa11.58□□□□□ -0.56
SS18-215ENST00000580642 NRN1Q9NPD7 142 aa11.58□□□□□ -0.56
SS18-215ENST00000580642 YTHDF2Q9Y5A9 579 aaKnown RBP11.58□□□□□ -0.56
SS18-215ENST00000580642 SERTM2A0A1B0GWG4 89 aa11.57□□□□□ -0.56
SS18-215ENST00000580642 NDUFB4O95168 129 aa11.57□□□□□ -0.56
SS18-215ENST00000580642 PF4P02776 101 aa11.57□□□□□ -0.56
SS18-215ENST00000580642 CD81P60033 236 aa11.57□□□□□ -0.56
SS18-215ENST00000580642 PAFAH1B2P68402 229 aa11.57□□□□□ -0.56
SS18-215ENST00000580642 TCF24Q7RTU0 167 aa11.57□□□□□ -0.56
SS18-215ENST00000580642 C3orf56Q8N813 242 aa11.57□□□□□ -0.56
SS18-215ENST00000580642 C5orf17Q8NAS9 161 aa11.57□□□□□ -0.56
SS18-215ENST00000580642 OR2K2Q8NGT1 345 aa11.57□□□□□ -0.56
SS18-215ENST00000580642 BLNKQ8WV28 456 aa11.57□□□□□ -0.56
SS18-215ENST00000580642 C11orf52Q96A22 123 aa11.57□□□□□ -0.56
SS18-215ENST00000580642 DUX3Q96PT4 197 aa11.57□□□□□ -0.56
SS18-215ENST00000580642 RARRES2Q99969 163 aa11.57□□□□□ -0.56
SS18-215ENST00000580642 TREM1Q9NP99 234 aa11.57□□□□□ -0.56
SS18-215ENST00000580642 MLXQ9UH92 298 aa11.57□□□□□ -0.56
SS18-215ENST00000580642 ATRQ13535 2644 aa11.56□□□□□ -0.56
SS18-215ENST00000580642 IGHV3-49A0A0A0MS15 119 aa11.56□□□□□ -0.56
SS18-215ENST00000580642 IGHV3-66A0A0C4DH42 116 aa11.56□□□□□ -0.56
SS18-215ENST00000580642 GGTLC3B5MD39 225 aa11.56□□□□□ -0.56
SS18-215ENST00000580642 KRBOX1C9JBD0 128 aa11.56□□□□□ -0.56
SS18-215ENST00000580642 UBE2G2P60604 165 aa11.56□□□□□ -0.56
SS18-215ENST00000580642 RANP62826 216 aaKnown RBP11.56□□□□□ -0.56
SS18-215ENST00000580642 SUMO1P63165 101 aaKnown RBP11.56□□□□□ -0.56
SS18-215ENST00000580642 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.56□□□□□ -0.56
SS18-215ENST00000580642 SLC7A5P1Q8MH63 180 aa11.56□□□□□ -0.56
SS18-215ENST00000580642 LINC00482Q8N8I6 264 aa11.56□□□□□ -0.56
SS18-215ENST00000580642 Q9H3A6 140 aa11.56□□□□□ -0.56
SS18-215ENST00000580642 ZNF331Q9NQX6 463 aaPredicted RBP11.56□□□□□ -0.56
SS18-215ENST00000580642 IGHV3OR16-13A0A075B7E8 117 aa11.55□□□□□ -0.56
SS18-215ENST00000580642 IGHV3-74A0A0B4J1X5 117 aa11.55□□□□□ -0.56
SS18-215ENST00000580642 TMEM218A2RU14 115 aa11.55□□□□□ -0.56
SS18-215ENST00000580642 FBLL1A6NHQ2 334 aaKnown RBP11.55□□□□□ -0.56
SS18-215ENST00000580642 ISLRO14498 428 aa11.55□□□□□ -0.56
SS18-215ENST00000580642 S100A9P06702 114 aaKnown RBP11.55□□□□□ -0.56
SS18-215ENST00000580642 SRP19P09132 144 aaKnown RBP11.55□□□□□ -0.56
SS18-215ENST00000580642 INSL3P51460 131 aa11.55□□□□□ -0.56
SS18-215ENST00000580642 FAM74A3Q4VXF1 159 aa11.55□□□□□ -0.56
SS18-215ENST00000580642 ADAMTSL5Q6ZMM2 481 aa11.55□□□□□ -0.56
SS18-215ENST00000580642 CMTM2Q8TAZ6 248 aa11.55□□□□□ -0.56
SS18-215ENST00000580642 DYNLRB2Q8TF09 96 aa11.55□□□□□ -0.56
SS18-215ENST00000580642 PGPA6NDG6 321 aa11.54□□□□□ -0.56
SS18-215ENST00000580642 TSPAN4O14817 238 aa11.54□□□□□ -0.56
SS18-215ENST00000580642 ID1P41134 155 aa11.54□□□□□ -0.56
SS18-215ENST00000580642 CSN1S1P47710 185 aa11.54□□□□□ -0.56
SS18-215ENST00000580642 ATP5G3P48201 142 aa11.54□□□□□ -0.56
SS18-215ENST00000580642 RPL11P62913 178 aaKnown RBP11.54□□□□□ -0.56
SS18-215ENST00000580642 SRSF3P84103 164 aaKnown RBP11.54□□□□□ -0.56
SS18-215ENST00000580642 DEFB114Q30KQ6 69 aa11.54□□□□□ -0.56
SS18-215ENST00000580642 C17orf77Q96MU5 243 aa11.54□□□□□ -0.56
SS18-215ENST00000580642 CITED4Q96RK1 184 aa11.54□□□□□ -0.56
SS18-215ENST00000580642 MCRIP2Q9BUT9 160 aaKnown RBP11.54□□□□□ -0.56
SS18-215ENST00000580642 EPDR1Q9UM22 224 aa11.54□□□□□ -0.56
SS18-215ENST00000580642 SOCS3O14543 225 aa11.53□□□□□ -0.56
SS18-215ENST00000580642 RBPMS2Q6ZRY4 209 aaKnown RBP11.53□□□□□ -0.56
SS18-215ENST00000580642 WFDC9Q8NEX5 89 aa11.53□□□□□ -0.56
SS18-215ENST00000580642 ATG101Q9BSB4 218 aa11.53□□□□□ -0.56
SS18-215ENST00000580642 SEC11CQ9BY50 192 aa11.53□□□□□ -0.56
SS18-215ENST00000580642 C9JQL5 133 aa11.52□□□□□ -0.57
SS18-215ENST00000580642 K7EQM0 130 aa11.52□□□□□ -0.57
SS18-215ENST00000580642 SLC25A5P05141 298 aaKnown RBP11.52□□□□□ -0.57
SS18-215ENST00000580642 SFTA3P0C7M3 94 aa11.52□□□□□ -0.57
SS18-215ENST00000580642 S100A1P23297 94 aa11.52□□□□□ -0.57
SS18-215ENST00000580642 SOHLH1Q5JUK2 328 aa11.52□□□□□ -0.57
SS18-215ENST00000580642 HIST2H2BDQ6DRA6 164 aa11.52□□□□□ -0.57
SS18-215ENST00000580642 DCANP1Q8TF63 244 aa11.52□□□□□ -0.57
SS18-215ENST00000580642 C16orf92Q96LL3 132 aa11.52□□□□□ -0.57
SS18-215ENST00000580642 SPAG8Q99932 426 aaPredicted RBP11.52□□□□□ -0.57
SS18-215ENST00000580642 SLC17A3O00476 420 aa11.51□□□□□ -0.57
SS18-215ENST00000580642 PEX7O00628 323 aa11.51□□□□□ -0.57
SS18-215ENST00000580642 TCRAP04437 139 aa11.51□□□□□ -0.57
SS18-215ENST00000580642 CMC4P56277 68 aaPredicted RBP11.51□□□□□ -0.57
SS18-215ENST00000580642 SNRPD3P62318 126 aaKnown RBP11.51□□□□□ -0.57
SS18-215ENST00000580642 C10orf91Q5T1B1 145 aa11.51□□□□□ -0.57
SS18-215ENST00000580642 CYB561D1Q8N8Q1 229 aa11.51□□□□□ -0.57
SS18-215ENST00000580642 MS4A6AQ9H2W1 248 aa11.51□□□□□ -0.57
SS18-215ENST00000580642 KLF12Q9Y4X4 402 aa11.51□□□□□ -0.57
SS18-215ENST00000580642 TRAV8-2A0A0B4J237 113 aa11.5□□□□□ -0.57
SS18-215ENST00000580642 TRBV6-1A0A0K0K1D8 114 aa11.5□□□□□ -0.57
SS18-215ENST00000580642 RBAKDNA6NC62 111 aa11.5□□□□□ -0.57
SS18-215ENST00000580642 OR4C46A6NHA9 309 aa11.5□□□□□ -0.57
SS18-215ENST00000580642 K7EQG2 157 aa11.5□□□□□ -0.57
SS18-215ENST00000580642 DNASE2O00115 360 aaPredicted RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms