RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 CCL7P80098 99 aa-0.13□□□□□ -2.43
SS18-214ENST00000580003 AKIRIN2Q53H80 203 aa-0.13□□□□□ -2.43
SS18-214ENST00000580003 Q86TA4 180 aa-0.13□□□□□ -2.43
SS18-214ENST00000580003 IFT20Q8IY31 132 aa-0.13□□□□□ -2.43
SS18-214ENST00000580003 OR8J2Q8NGG1 315 aa-0.13□□□□□ -2.43
SS18-214ENST00000580003 OR4K15Q8NH41 348 aa-0.13□□□□□ -2.43
SS18-214ENST00000580003 PPP1R14BQ96C90 147 aa-0.13□□□□□ -2.43
SS18-214ENST00000580003 ZNF714Q96N38 554 aa-0.13□□□□□ -2.43
SS18-214ENST00000580003 PTPRFP10586 1907 aa-0.13□□□□□ -2.43
SS18-214ENST00000580003 CCDC144AA2RUR9 1427 aa-0.13□□□□□ -2.43
SS18-214ENST00000580003 DSTQ03001 7570 aaKnown RBP-0.14□□□□□ -2.43
SS18-214ENST00000580003 FREM3P0C091 2139 aa-0.14□□□□□ -2.43
SS18-214ENST00000580003 IGLV1-51P01701 117 aa-0.14□□□□□ -2.43
SS18-214ENST00000580003 IGHV3-33P01772 117 aa-0.14□□□□□ -2.43
SS18-214ENST00000580003 GOLT1AQ6ZVE7 132 aa-0.14□□□□□ -2.43
SS18-214ENST00000580003 OR10X1Q8NGY0 326 aa-0.14□□□□□ -2.43
SS18-214ENST00000580003 RMND5BQ96G75 393 aaPredicted RBP-0.14□□□□□ -2.43
SS18-214ENST00000580003 CCL19Q99731 98 aa-0.14□□□□□ -2.43
SS18-214ENST00000580003 POPDC3Q9HBV1 291 aa-0.14□□□□□ -2.43
SS18-214ENST00000580003 hDV103S1A0JD37 113 aa-0.15□□□□□ -2.43
SS18-214ENST00000580003 TMEM114B3SHH9 223 aa-0.15□□□□□ -2.43
SS18-214ENST00000580003 LYRM1O43325 122 aa-0.15□□□□□ -2.43
SS18-214ENST00000580003 PATE2Q6UY27 113 aa-0.15□□□□□ -2.43
SS18-214ENST00000580003 C10orf111Q8N326 155 aa-0.15□□□□□ -2.43
SS18-214ENST00000580003 ZHX1-C8orf76Q96EF9 292 aa-0.15□□□□□ -2.43
SS18-214ENST00000580003 PARVGQ9HBI0 331 aa-0.15□□□□□ -2.43
SS18-214ENST00000580003 FAM32AQ9Y421 112 aaKnown RBP-0.15□□□□□ -2.43
SS18-214ENST00000580003 HMGB3O15347 200 aaKnown RBP-0.16□□□□□ -2.44
SS18-214ENST00000580003 SPINK13Q1W4C9 94 aa-0.16□□□□□ -2.44
SS18-214ENST00000580003 CACYBPQ9HB71 228 aaKnown RBP-0.16□□□□□ -2.44
SS18-214ENST00000580003 MYLKQ15746 1914 aa-0.17□□□□□ -2.44
SS18-214ENST00000580003 AIPO00170 330 aa-0.17□□□□□ -2.44
SS18-214ENST00000580003 NFYBP25208 207 aa-0.17□□□□□ -2.44
SS18-214ENST00000580003 CDKN2CP42773 168 aa-0.17□□□□□ -2.44
SS18-214ENST00000580003 KLRD1Q13241 179 aa-0.17□□□□□ -2.44
SS18-214ENST00000580003 ITGB3BPQ13352 177 aaPredicted RBP-0.17□□□□□ -2.44
SS18-214ENST00000580003 SCGB2B2Q4G0G5 96 aa-0.17□□□□□ -2.44
SS18-214ENST00000580003 TMEM14EPQ6UXP3 125 aa-0.17□□□□□ -2.44
SS18-214ENST00000580003 MAP1LC3BQ9GZQ8 125 aa-0.17□□□□□ -2.44
SS18-214ENST00000580003 ENY2Q9NPA8 101 aa-0.17□□□□□ -2.44
SS18-214ENST00000580003 A0A0J9YY99 117 aa-0.18□□□□□ -2.44
SS18-214ENST00000580003 DUXBA0A1W2PPF3 345 aa-0.18□□□□□ -2.44
SS18-214ENST00000580003 C10orf99Q6UWK7 81 aa-0.18□□□□□ -2.44
SS18-214ENST00000580003 ZGRF1Q86YA3 2104 aa-0.18□□□□□ -2.44
SS18-214ENST00000580003 TRAV5A0A0B4J249 113 aa-0.19□□□□□ -2.44
SS18-214ENST00000580003 ODAMA1E959 279 aa-0.19□□□□□ -2.44
SS18-214ENST00000580003 A6NN06 94 aa-0.19□□□□□ -2.44
SS18-214ENST00000580003 NDUFC2O95298 119 aa-0.19□□□□□ -2.44
SS18-214ENST00000580003 CAV3P56539 151 aa-0.19□□□□□ -2.44
SS18-214ENST00000580003 HSPE1P61604 102 aaKnown RBP-0.19□□□□□ -2.44
SS18-214ENST00000580003 TAF1AQ15573 450 aaPredicted RBP-0.19□□□□□ -2.44
SS18-214ENST00000580003 C5orf17Q8NAS9 161 aa-0.19□□□□□ -2.44
SS18-214ENST00000580003 LPAR5Q9H1C0 372 aa-0.19□□□□□ -2.44
SS18-214ENST00000580003 NCAPD3P42695 1498 aa-0.19□□□□□ -2.44
SS18-214ENST00000580003 PTPRZ1P23471 2315 aaPredicted RBP-0.19□□□□□ -2.44
SS18-214ENST00000580003 DMBT1Q9UGM3 2413 aaPredicted RBP-0.19□□□□□ -2.44
SS18-214ENST00000580003 ZFYVE9O95405 1425 aa-0.2□□□□□ -2.44
SS18-214ENST00000580003 MGAMO43451 1857 aa-0.2□□□□□ -2.44
SS18-214ENST00000580003 IGSF10Q6WRI0 2623 aa-0.2□□□□□ -2.44
SS18-214ENST00000580003 IFNA14P01570 189 aa-0.2□□□□□ -2.44
SS18-214ENST00000580003 CRHP06850 196 aa-0.2□□□□□ -2.44
SS18-214ENST00000580003 PDE6GP18545 87 aa-0.2□□□□□ -2.44
SS18-214ENST00000580003 RPL37AP61513 92 aaKnown RBP-0.2□□□□□ -2.44
SS18-214ENST00000580003 PPTC7Q8NI37 304 aa-0.2□□□□□ -2.44
SS18-214ENST00000580003 GRPEL2Q8TAA5 225 aa-0.2□□□□□ -2.44
SS18-214ENST00000580003 PRAP1Q96NZ9 151 aa-0.2□□□□□ -2.44
SS18-214ENST00000580003 ARL2BPQ9Y2Y0 163 aa-0.2□□□□□ -2.44
SS18-214ENST00000580003 COL7A1Q02388 2944 aa-0.2□□□□□ -2.44
SS18-214ENST00000580003 CEP164Q9UPV0 1460 aa-0.21□□□□□ -2.44
SS18-214ENST00000580003 TPRP12270 2363 aaKnown RBP-0.21□□□□□ -2.44
SS18-214ENST00000580003 C9orf170A2RU37 121 aa-0.21□□□□□ -2.44
SS18-214ENST00000580003 BANF1O75531 89 aa-0.21□□□□□ -2.44
SS18-214ENST00000580003 SULT1C4O75897 302 aa-0.21□□□□□ -2.44
SS18-214ENST00000580003 NUP98P52948 1817 aa-0.22□□□□□ -2.44
SS18-214ENST00000580003 PRORSD1PA6NEY8 169 aa-0.22□□□□□ -2.44
SS18-214ENST00000580003 RER1O15258 196 aa-0.22□□□□□ -2.44
SS18-214ENST00000580003 SERPINA1P01009 418 aa-0.22□□□□□ -2.44
SS18-214ENST00000580003 MIR22HGQ0VDD5 57 aa-0.22□□□□□ -2.44
SS18-214ENST00000580003 CASC2Q6XLA1 102 aa-0.22□□□□□ -2.44
SS18-214ENST00000580003 FOXI2Q6ZQN5 318 aa-0.22□□□□□ -2.44
SS18-214ENST00000580003 OR2J1Q9GZK6 312 aa-0.22□□□□□ -2.44
SS18-214ENST00000580003 CST11Q9H112 138 aa-0.22□□□□□ -2.44
SS18-214ENST00000580003 COL24A1Q17RW2 1714 aa-0.22□□□□□ -2.44
SS18-214ENST00000580003 ZFYVE26Q68DK2 2539 aa-0.22□□□□□ -2.44
SS18-214ENST00000580003 KNTC1P50748 2209 aa-0.23□□□□□ -2.45
SS18-214ENST00000580003 HIST1H2BKO60814 126 aa-0.23□□□□□ -2.45
SS18-214ENST00000580003 CD3DP04234 171 aa-0.23□□□□□ -2.45
SS18-214ENST00000580003 HIST1H2BJP06899 126 aa-0.23□□□□□ -2.45
SS18-214ENST00000580003 CST2P09228 141 aa-0.23□□□□□ -2.45
SS18-214ENST00000580003 TMBIM6P55061 237 aa-0.23□□□□□ -2.45
SS18-214ENST00000580003 NCALDP61601 193 aa-0.23□□□□□ -2.45
SS18-214ENST00000580003 LYG2Q86SG7 212 aa-0.23□□□□□ -2.45
SS18-214ENST00000580003 C9orf16Q9BUW7 83 aa-0.23□□□□□ -2.45
SS18-214ENST00000580003 NCOR2Q9Y618 2525 aa-0.23□□□□□ -2.45
SS18-214ENST00000580003 LOC285556D6RIA3 1793 aa-0.24□□□□□ -2.45
SS18-214ENST00000580003 SPINK1P00995 79 aa-0.24□□□□□ -2.45
SS18-214ENST00000580003 APOA2P02652 100 aa-0.24□□□□□ -2.45
SS18-214ENST00000580003 ARPP19P56211 112 aa-0.24□□□□□ -2.45
SS18-214ENST00000580003 PYCARDQ9ULZ3 195 aa-0.24□□□□□ -2.45
SS18-214ENST00000580003 SPTBP11277 2137 aa-0.25□□□□□ -2.45
Retrieved 100 of 20,778 RNA–protein pairs in 129.4 ms