RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 SLC38A11Q08AI6 406 aa9.72□□□□□ -0.85
CCDC40-216ENST00000576241 PXDC1Q5TGL8 231 aa9.72□□□□□ -0.85
CCDC40-216ENST00000576241 ZNF546Q86UE3 836 aa9.72□□□□□ -0.85
CCDC40-216ENST00000576241 BAP18Q8IXM2 172 aa9.72□□□□□ -0.85
CCDC40-216ENST00000576241 ZBTB8BQ8NAP8 495 aaPredicted RBP9.72□□□□□ -0.85
CCDC40-216ENST00000576241 MITD1Q8WV92 249 aa9.72□□□□□ -0.85
CCDC40-216ENST00000576241 LYRM9A8MSI8 78 aa9.71□□□□□ -0.86
CCDC40-216ENST00000576241 CXCL3P19876 107 aa9.71□□□□□ -0.86
CCDC40-216ENST00000576241 TSPOP30536 169 aa9.71□□□□□ -0.86
CCDC40-216ENST00000576241 ZNF846Q147U1 533 aa9.71□□□□□ -0.86
CCDC40-216ENST00000576241 LGALS9BQ3B8N2 356 aa9.71□□□□□ -0.86
CCDC40-216ENST00000576241 TMEM88Q6PEY1 159 aa9.71□□□□□ -0.86
CCDC40-216ENST00000576241 OR8A1Q8NGG7 326 aa9.71□□□□□ -0.86
CCDC40-216ENST00000576241 SDHCQ99643 169 aaPredicted RBP9.71□□□□□ -0.86
CCDC40-216ENST00000576241 GGACTQ9BVM4 153 aa9.71□□□□□ -0.86
CCDC40-216ENST00000576241 ARV1Q9H2C2 271 aa9.71□□□□□ -0.86
CCDC40-216ENST00000576241 PKD1P98161 4303 aa9.71□□□□□ -0.86
CCDC40-216ENST00000576241 UBR4Q5T4S7 5183 aa9.7□□□□□ -0.86
CCDC40-216ENST00000576241 TRAV12-2A0A075B6T6 113 aa9.7□□□□□ -0.86
CCDC40-216ENST00000576241 L7N2F9 121 aa9.7□□□□□ -0.86
CCDC40-216ENST00000576241 CRXO43186 299 aaPredicted RBP9.7□□□□□ -0.86
CCDC40-216ENST00000576241 MBPP02686 304 aaPredicted RBP9.7□□□□□ -0.86
CCDC40-216ENST00000576241 VAMP2P63027 116 aa9.7□□□□□ -0.86
CCDC40-216ENST00000576241 PSG3Q16557 428 aa9.7□□□□□ -0.86
CCDC40-216ENST00000576241 RNF212Q495C1 297 aa9.7□□□□□ -0.86
CCDC40-216ENST00000576241 TMEM256Q8N2U0 113 aa9.7□□□□□ -0.86
CCDC40-216ENST00000576241 C15orf53Q8NAA6 179 aa9.7□□□□□ -0.86
CCDC40-216ENST00000576241 C20orf85Q9H1P6 137 aa9.7□□□□□ -0.86
CCDC40-216ENST00000576241 RCL1Q9Y2P8 373 aaKnown RBP9.7□□□□□ -0.86
CCDC40-216ENST00000576241 IGLV2-18A0A075B6J9 118 aa9.69□□□□□ -0.86
CCDC40-216ENST00000576241 C7orf66A4D0T2 115 aa9.69□□□□□ -0.86
CCDC40-216ENST00000576241 PRSS29PA6NIE9 313 aa9.69□□□□□ -0.86
CCDC40-216ENST00000576241 AGPAT2O15120 278 aa9.69□□□□□ -0.86
CCDC40-216ENST00000576241 COX7A2P2O60397 106 aa9.69□□□□□ -0.86
CCDC40-216ENST00000576241 DEFB130BP0DP73 79 aa9.69□□□□□ -0.86
CCDC40-216ENST00000576241 DEFB130AP0DP74 79 aa9.69□□□□□ -0.86
CCDC40-216ENST00000576241 CXCL2P19875 107 aa9.69□□□□□ -0.86
CCDC40-216ENST00000576241 LCN15Q6UWW0 184 aa9.69□□□□□ -0.86
CCDC40-216ENST00000576241 PATE2Q6UY27 113 aa9.69□□□□□ -0.86
CCDC40-216ENST00000576241 LINC00305Q7Z4B0 112 aa9.69□□□□□ -0.86
CCDC40-216ENST00000576241 RPUSD4Q96CM3 377 aaKnown RBP9.69□□□□□ -0.86
CCDC40-216ENST00000576241 LINC01587Q99440 93 aa9.69□□□□□ -0.86
CCDC40-216ENST00000576241 FAM25EA8MYX2 175 aa9.68□□□□□ -0.86
CCDC40-216ENST00000576241 RTL8CO15255 209 aa9.68□□□□□ -0.86
CCDC40-216ENST00000576241 PRM2P04554 102 aa9.68□□□□□ -0.86
CCDC40-216ENST00000576241 BCAP31P51572 246 aa9.68□□□□□ -0.86
CCDC40-216ENST00000576241 RAB31Q13636 194 aa9.68□□□□□ -0.86
CCDC40-216ENST00000576241 SOHLH1Q5JUK2 328 aa9.68□□□□□ -0.86
CCDC40-216ENST00000576241 BPIFA4PQ86YQ2 179 aa9.68□□□□□ -0.86
CCDC40-216ENST00000576241 SLC50A1Q9BRV3 221 aa9.68□□□□□ -0.86
CCDC40-216ENST00000576241 CCSO14618 274 aa9.67□□□□□ -0.86
CCDC40-216ENST00000576241 LYRM1O43325 122 aa9.67□□□□□ -0.86
CCDC40-216ENST00000576241 HTN1P15515 57 aa9.67□□□□□ -0.86
CCDC40-216ENST00000576241 AZU1P20160 251 aa9.67□□□□□ -0.86
CCDC40-216ENST00000576241 CDKN1BP46527 198 aa9.67□□□□□ -0.86
CCDC40-216ENST00000576241 CAV2P51636 162 aa9.67□□□□□ -0.86
CCDC40-216ENST00000576241 TAS2R60P59551 318 aa9.67□□□□□ -0.86
CCDC40-216ENST00000576241 ARL16Q0P5N6 197 aa9.67□□□□□ -0.86
CCDC40-216ENST00000576241 ATG101Q9BSB4 218 aa9.67□□□□□ -0.86
CCDC40-216ENST00000576241 ZNF331Q9NQX6 463 aaPredicted RBP9.67□□□□□ -0.86
CCDC40-216ENST00000576241 LSM5Q9Y4Y9 91 aaKnown RBP9.67□□□□□ -0.86
CCDC40-216ENST00000576241 C5orf51A6NDU8 294 aa9.66□□□□□ -0.86
CCDC40-216ENST00000576241 F5H768 121 aa9.66□□□□□ -0.86
CCDC40-216ENST00000576241 MRPS12O15235 138 aaKnown RBP9.66□□□□□ -0.86
CCDC40-216ENST00000576241 TCRBP04435 133 aa9.66□□□□□ -0.86
CCDC40-216ENST00000576241 ATP5G1P05496 136 aa9.66□□□□□ -0.86
CCDC40-216ENST00000576241 ATP5G3P48201 142 aa9.66□□□□□ -0.86
CCDC40-216ENST00000576241 CAMLGP49069 296 aa9.66□□□□□ -0.86
CCDC40-216ENST00000576241 FAM3BP58499 235 aaPredicted RBP9.66□□□□□ -0.86
CCDC40-216ENST00000576241 C10orf113Q5VZT2 155 aa9.66□□□□□ -0.86
CCDC40-216ENST00000576241 Q6ZRG5 221 aa9.66□□□□□ -0.86
CCDC40-216ENST00000576241 OR10J6PQ8NGY7 276 aa9.66□□□□□ -0.86
CCDC40-216ENST00000576241 C16orf74Q96GX8 76 aa9.66□□□□□ -0.86
CCDC40-216ENST00000576241 MGST2Q99735 147 aa9.66□□□□□ -0.86
CCDC40-216ENST00000576241 TIMM8BQ9Y5J9 83 aaPredicted RBP9.66□□□□□ -0.86
CCDC40-216ENST00000576241 TRAV6A0A075B6T7 132 aa9.65□□□□□ -0.86
CCDC40-216ENST00000576241 PLAC8L1A1L4L8 177 aa9.65□□□□□ -0.86
CCDC40-216ENST00000576241 PLA2G10O15496 165 aa9.65□□□□□ -0.86
CCDC40-216ENST00000576241 SNRPCP09234 159 aaKnown RBP9.65□□□□□ -0.86
CCDC40-216ENST00000576241 PRB4P10163 310 aaPredicted RBP9.65□□□□□ -0.86
CCDC40-216ENST00000576241 PVALBP20472 110 aaPredicted RBP9.65□□□□□ -0.86
CCDC40-216ENST00000576241 Q6ZR54 194 aa9.65□□□□□ -0.86
CCDC40-216ENST00000576241 ZNF575Q86XF7 245 aa9.65□□□□□ -0.86
CCDC40-216ENST00000576241 ZNF431Q8TF32 576 aaPredicted RBP9.65□□□□□ -0.86
CCDC40-216ENST00000576241 NUDT15Q9NV35 164 aa9.65□□□□□ -0.86
CCDC40-216ENST00000576241 PXMP4Q9Y6I8 212 aa9.65□□□□□ -0.86
CCDC40-216ENST00000576241 DMBT1Q9UGM3 2413 aaPredicted RBP9.65□□□□□ -0.86
CCDC40-216ENST00000576241 CBY3A6NI87 242 aa9.64□□□□□ -0.87
CCDC40-216ENST00000576241 H7BYZ3 331 aa9.64□□□□□ -0.87
CCDC40-216ENST00000576241 CST7O76096 145 aa9.64□□□□□ -0.87
CCDC40-216ENST00000576241 OPCMLQ14982 345 aa9.64□□□□□ -0.87
CCDC40-216ENST00000576241 FCN2Q15485 313 aa9.64□□□□□ -0.87
CCDC40-216ENST00000576241 ZNF493Q6ZR52 646 aa9.64□□□□□ -0.87
CCDC40-216ENST00000576241 NRARPQ7Z6K4 114 aa9.64□□□□□ -0.87
CCDC40-216ENST00000576241 MAPKAPK5-AS1Q8N8E1 139 aa9.64□□□□□ -0.87
CCDC40-216ENST00000576241 OR1L4Q8NGR5 311 aa9.64□□□□□ -0.87
CCDC40-216ENST00000576241 TMEM37Q8WXS4 190 aa9.64□□□□□ -0.87
CCDC40-216ENST00000576241 C20orf144Q9BQM9 153 aa9.64□□□□□ -0.87
CCDC40-216ENST00000576241 DNAJC4Q9NNZ3 241 aa9.64□□□□□ -0.87
CCDC40-216ENST00000576241 UQCC1Q9NVA1 299 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms