RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 PDYNP01213 254 aa3.65□□□□□ -1.83
VPS53-219ENST00000576019 IGKV3-15P01624 115 aa3.65□□□□□ -1.83
VPS53-219ENST00000576019 PTHLHP12272 177 aa3.65□□□□□ -1.83
VPS53-219ENST00000576019 CPMP14384 443 aa3.65□□□□□ -1.83
VPS53-219ENST00000576019 HOXB6P17509 224 aaKnown RBP3.65□□□□□ -1.83
VPS53-219ENST00000576019 RPL26P61254 145 aaKnown RBP3.65□□□□□ -1.83
VPS53-219ENST00000576019 APOFQ13790 326 aa3.65□□□□□ -1.83
VPS53-219ENST00000576019 TNFAIP8L3Q5GJ75 292 aa3.65□□□□□ -1.83
VPS53-219ENST00000576019 TBPL2Q6SJ96 375 aa3.65□□□□□ -1.83
VPS53-219ENST00000576019 SAXO1Q8IYX7 474 aa3.65□□□□□ -1.83
VPS53-219ENST00000576019 ZNF664Q8N3J9 261 aa3.65□□□□□ -1.83
VPS53-219ENST00000576019 ZNF615Q8N8J6 731 aa3.65□□□□□ -1.83
VPS53-219ENST00000576019 OR13D1Q8NGV5 346 aa3.65□□□□□ -1.83
VPS53-219ENST00000576019 OR10A6Q8NH74 314 aa3.65□□□□□ -1.83
VPS53-219ENST00000576019 GRPEL2Q8TAA5 225 aa3.65□□□□□ -1.83
VPS53-219ENST00000576019 TSPAN32Q96QS1 320 aa3.65□□□□□ -1.83
VPS53-219ENST00000576019 TMEM222Q9H0R3 208 aa3.65□□□□□ -1.83
VPS53-219ENST00000576019 PRNDQ9UKY0 176 aa3.65□□□□□ -1.83
VPS53-219ENST00000576019 RPL26L1Q9UNX3 145 aaKnown RBP3.65□□□□□ -1.83
VPS53-219ENST00000576019 FAT3Q8TDW7 4589 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 hCG_1818297A0A087WSY0 165 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 UQCRHLA0A096LP55 91 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 EFCAB10A6NFE3 127 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 ZNF729A6NN14 1252 aaPredicted RBP3.64□□□□□ -1.83
VPS53-219ENST00000576019 A8MT66 165 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 C16orf90A8MZG2 172 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 TSTD3H0UI37 97 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 IGKV1D-33P01593 117 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 IGKV1-33P01594 117 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 C1QBP02746 253 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 ERP29P30040 261 aaKnown RBP3.64□□□□□ -1.83
VPS53-219ENST00000576019 FOXA1P55317 472 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 MAXP61244 160 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 FGF12P61328 243 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 CAV1Q03135 178 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 GRK1Q15835 563 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 NDUFA5Q16718 116 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 C12orf74Q32Q52 190 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 AKR1C8PQ5T2L2 129 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 SLC22A24Q8N4F4 322 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 FNDC9Q8TBE3 224 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 RMI2Q96E14 147 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 NMNAT3Q96T66 252 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 COMMD5Q9GZQ3 224 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 PARVBQ9HBI1 364 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 TAAR3PQ9P1P4 343 aa3.64□□□□□ -1.83
VPS53-219ENST00000576019 IGLV4-69A0A075B6H9 119 aa3.63□□□□□ -1.83
VPS53-219ENST00000576019 G3V2T6 193 aa3.63□□□□□ -1.83
VPS53-219ENST00000576019 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.63□□□□□ -1.83
VPS53-219ENST00000576019 TXNDC9O14530 226 aa3.63□□□□□ -1.83
VPS53-219ENST00000576019 RTL8CO15255 209 aa3.63□□□□□ -1.83
VPS53-219ENST00000576019 CD7P09564 240 aa3.63□□□□□ -1.83
VPS53-219ENST00000576019 S100GP29377 79 aa3.63□□□□□ -1.83
VPS53-219ENST00000576019 GLRXP35754 106 aa3.63□□□□□ -1.83
VPS53-219ENST00000576019 RHOBP62745 196 aa3.63□□□□□ -1.83
VPS53-219ENST00000576019 HOXC5Q00444 222 aa3.63□□□□□ -1.83
VPS53-219ENST00000576019 CCDC58Q4VC31 144 aa3.63□□□□□ -1.83
VPS53-219ENST00000576019 Q5VSD8 79 aa3.63□□□□□ -1.83
VPS53-219ENST00000576019 SMARCD3Q6STE5 483 aa3.63□□□□□ -1.83
VPS53-219ENST00000576019 SCXQ7RTU7 201 aa3.63□□□□□ -1.83
VPS53-219ENST00000576019 GPHB5Q86YW7 130 aa3.63□□□□□ -1.83
VPS53-219ENST00000576019 SPANXA2-OT1Q8N9U9 137 aa3.63□□□□□ -1.83
VPS53-219ENST00000576019 OR4K13Q8NH42 304 aa3.63□□□□□ -1.83
VPS53-219ENST00000576019 ZNF721Q8TF20 911 aa3.63□□□□□ -1.83
VPS53-219ENST00000576019 NAT14Q8WUY8 206 aa3.63□□□□□ -1.83
VPS53-219ENST00000576019 MUCL1Q96DR8 90 aa3.63□□□□□ -1.83
VPS53-219ENST00000576019 HEATR1Q9H583 2144 aaKnown RBP3.62□□□□□ -1.83
VPS53-219ENST00000576019 IFI30P13284 250 aa3.62□□□□□ -1.83
VPS53-219ENST00000576019 PHBP35232 272 aa3.62□□□□□ -1.83
VPS53-219ENST00000576019 NCALDP61601 193 aa3.62□□□□□ -1.83
VPS53-219ENST00000576019 BTG2P78543 158 aa3.62□□□□□ -1.83
VPS53-219ENST00000576019 ZFP2Q6ZN57 461 aa3.62□□□□□ -1.83
VPS53-219ENST00000576019 TMEM35BQ8NCS4 154 aa3.62□□□□□ -1.83
VPS53-219ENST00000576019 RTN4IP1Q8WWV3 396 aaPredicted RBP3.62□□□□□ -1.83
VPS53-219ENST00000576019 ROPN1LQ96C74 230 aa3.62□□□□□ -1.83
VPS53-219ENST00000576019 CCDC90BQ9GZT6 254 aa3.62□□□□□ -1.83
VPS53-219ENST00000576019 FAM107BQ9H098 131 aa3.62□□□□□ -1.83
VPS53-219ENST00000576019 C11orf68Q9H3H3 251 aaKnown RBP3.62□□□□□ -1.83
VPS53-219ENST00000576019 AK3Q9UIJ7 227 aa3.62□□□□□ -1.83
VPS53-219ENST00000576019 TRBV20OR9-2A0A075B6H5 130 aa3.61□□□□□ -1.83
VPS53-219ENST00000576019 TRAV40A0A0B4J280 105 aa3.61□□□□□ -1.83
VPS53-219ENST00000576019 MAP1LC3B2A6NCE7 125 aa3.61□□□□□ -1.83
VPS53-219ENST00000576019 GAS8-AS1O95177 125 aa3.61□□□□□ -1.83
VPS53-219ENST00000576019 ZNF682O95780 498 aa3.61□□□□□ -1.83
VPS53-219ENST00000576019 C8GP07360 202 aa3.61□□□□□ -1.83
VPS53-219ENST00000576019 SMIM17P0DL12 118 aa3.61□□□□□ -1.83
VPS53-219ENST00000576019 COL8A2P25067 703 aa3.61□□□□□ -1.83
VPS53-219ENST00000576019 MT3P25713 68 aa3.61□□□□□ -1.83
VPS53-219ENST00000576019 ZNF140P52738 457 aaPredicted RBP3.61□□□□□ -1.83
VPS53-219ENST00000576019 TAS2R45P59539 299 aa3.61□□□□□ -1.83
VPS53-219ENST00000576019 DCUN1D2Q6PH85 259 aa3.61□□□□□ -1.83
VPS53-219ENST00000576019 EIF4E3Q8N5X7 224 aaKnown RBP3.61□□□□□ -1.83
VPS53-219ENST00000576019 ZNF283Q8N7M2 679 aa3.61□□□□□ -1.83
VPS53-219ENST00000576019 DAND5Q8N907 189 aa3.61□□□□□ -1.83
VPS53-219ENST00000576019 ZNF439Q8NDP4 499 aa3.61□□□□□ -1.83
VPS53-219ENST00000576019 SLC25A40Q8TBP6 338 aa3.61□□□□□ -1.83
VPS53-219ENST00000576019 MAFIPQ8WZ33 124 aa3.61□□□□□ -1.83
VPS53-219ENST00000576019 LZICQ8WZA0 190 aa3.61□□□□□ -1.83
VPS53-219ENST00000576019 PYURFQ96I23 114 aa3.61□□□□□ -1.83
VPS53-219ENST00000576019 GPER1Q99527 375 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 89.8 ms