RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 IGLV2-14P01704 120 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 P01737 135 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 APOC3P02656 99 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 FXYD4P59646 89 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 ERVK-16P61578 105 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 LAMTOR1Q6IAA8 161 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 MOB1BQ7L9L4 216 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 OR8B3Q8NGG8 313 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 RXFP4Q8TDU9 374 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 DNAJC30Q96LL9 226 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 HYLS1Q96M11 299 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 OR8B2Q96RD0 313 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 SLC25A39Q9BZJ4 359 aaPredicted RBP5.27□□□□□ -1.57
VPS53-217ENST00000575100 PRSS22Q9GZN4 317 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 MMP26Q9NRE1 261 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 RPUSD1Q9UJJ7 312 aaKnown RBP5.27□□□□□ -1.57
VPS53-217ENST00000575100 CARHSP1Q9Y2V2 147 aaKnown RBP5.27□□□□□ -1.57
VPS53-217ENST00000575100 LINC00312Q9Y6C7 94 aa5.27□□□□□ -1.57
VPS53-217ENST00000575100 TRGV10A0A0A0MS01 117 aa5.26□□□□□ -1.57
VPS53-217ENST00000575100 A0A0G2JRQ6 117 aa5.26□□□□□ -1.57
VPS53-217ENST00000575100 PPYP01298 95 aa5.26□□□□□ -1.57
VPS53-217ENST00000575100 FAUP35544 74 aaKnown RBP5.26□□□□□ -1.57
VPS53-217ENST00000575100 REG1BP48304 166 aa5.26□□□□□ -1.57
VPS53-217ENST00000575100 LINC00205P59089 165 aa5.26□□□□□ -1.57
VPS53-217ENST00000575100 GNB2P62879 340 aa5.26□□□□□ -1.57
VPS53-217ENST00000575100 FA2HQ7L5A8 372 aa5.26□□□□□ -1.57
VPS53-217ENST00000575100 Q8N7P7 452 aa5.26□□□□□ -1.57
VPS53-217ENST00000575100 SRSF12Q8WXF0 261 aaKnown RBP5.26□□□□□ -1.57
VPS53-217ENST00000575100 IL22RA2Q969J5 263 aa5.26□□□□□ -1.57
VPS53-217ENST00000575100 RTBDNQ9BSG5 229 aaPredicted RBP5.26□□□□□ -1.57
VPS53-217ENST00000575100 LINC00574Q9H8X3 128 aa5.26□□□□□ -1.57
VPS53-217ENST00000575100 IGHV3-38A0A0C4DH36 116 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 IGLV5-39A0A0G2JS06 123 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 hADV38S2A0JD32 116 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 RBFOX2O43251 390 aaKnown RBP eCLIP5.25□□□□□ -1.57
VPS53-217ENST00000575100 PROP1O75360 226 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 ZNF728P0DKX0 622 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 MEF2CQ06413 473 aaPredicted RBP5.25□□□□□ -1.57
VPS53-217ENST00000575100 SRSF4Q08170 494 aaKnown RBP5.25□□□□□ -1.57
VPS53-217ENST00000575100 FAM162BQ5T6X4 162 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 TOMM20LQ6UXN7 152 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 GSG1LQ6UXU4 331 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 ZNF818PQ6ZRF7 136 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 LY6G5BQ8NDX9 201 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 ZNF714Q96N38 554 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 GPR82Q96P67 336 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 IDI2-AS1Q9NZ38 188 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 ERG28Q9UKR5 140 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 OR4C46A6NHA9 309 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 INMT-MINDY4F8WBC2 141 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 K7EQG2 157 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 HMGB3O15347 200 aaKnown RBP5.25□□□□□ -1.57
VPS53-217ENST00000575100 NFYBP25208 207 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 SUPT4H1P63272 117 aaKnown RBP5.25□□□□□ -1.57
VPS53-217ENST00000575100 RUNX1Q01196 453 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 ACOT6Q3I5F7 207 aaPredicted RBP5.25□□□□□ -1.57
VPS53-217ENST00000575100 MORN2Q502X0 79 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 OR8I2Q8N0Y5 310 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 C6orf223Q8N319 242 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 ZNF664Q8N3J9 261 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 ZNF439Q8NDP4 499 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 OR10G7Q8NGN6 311 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 SECTM1Q8WVN6 248 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 TMED6Q8WW62 240 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 ABHD14BQ96IU4 210 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 ZNF436Q9C0F3 470 aaPredicted RBP5.25□□□□□ -1.57
VPS53-217ENST00000575100 CCL28Q9NRJ3 127 aa5.25□□□□□ -1.57
VPS53-217ENST00000575100 C17orf98A8MV24 154 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 CT45A10P0DMU9 189 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 IGHV1-8P0DP01 117 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 KIR2DS2P43631 304 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 TAS2R30P59541 319 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 HEPN1Q6WQI6 88 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 C1orf158Q8N1D5 194 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 SLC25A21Q9BQT8 299 aaPredicted RBP5.24□□□□□ -1.57
VPS53-217ENST00000575100 ZNF747Q9BV97 191 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 IFI27L2Q9H2X8 130 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 DOK5Q9P104 306 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 DOCK11Q5JSL3 2073 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 YPEL1O60688 119 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 MOSP00540 346 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 RHOGP84095 191 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 DEFA5Q01523 94 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 DIAPH2-AS1Q14236 149 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 ZNF266Q14584 549 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 TMEM241Q24JQ0 296 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 PRSS54Q6PEW0 395 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 OR1N2Q8NGR9 330 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 BLNKQ8WV28 456 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 YPEL2Q96QA6 119 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 OR2D2Q9H210 308 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 RNF114Q9Y508 228 aa5.24□□□□□ -1.57
VPS53-217ENST00000575100 A0A1W2PS18 150 aa5.23□□□□□ -1.57
VPS53-217ENST00000575100 C7orf66A4D0T2 115 aa5.23□□□□□ -1.57
VPS53-217ENST00000575100 MPC2O95563 127 aa5.23□□□□□ -1.57
VPS53-217ENST00000575100 REG1AP05451 166 aa5.23□□□□□ -1.57
VPS53-217ENST00000575100 PGAM2P15259 253 aa5.23□□□□□ -1.57
VPS53-217ENST00000575100 CTRLP40313 264 aa5.23□□□□□ -1.57
VPS53-217ENST00000575100 KLRD1Q13241 179 aa5.23□□□□□ -1.57
VPS53-217ENST00000575100 DHRS2Q13268 280 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms