RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 STAG3L2P0CL84 134 aa12.74□□□□□ -0.37
NUP88-210ENST00000574867 STAG3L3P0CL85 134 aa12.74□□□□□ -0.37
NUP88-210ENST00000574867 PYYP10082 97 aa12.74□□□□□ -0.37
NUP88-210ENST00000574867 PDE6HQ13956 83 aa12.74□□□□□ -0.37
NUP88-210ENST00000574867 C16orf92Q96LL3 132 aa12.74□□□□□ -0.37
NUP88-210ENST00000574867 MAP6D1Q9H9H5 199 aa12.74□□□□□ -0.37
NUP88-210ENST00000574867 ZNF253O75346 499 aa12.74□□□□□ -0.37
NUP88-210ENST00000574867 RAB5CP51148 216 aa12.74□□□□□ -0.37
NUP88-210ENST00000574867 UBE2L3P68036 154 aaKnown RBP12.74□□□□□ -0.37
NUP88-210ENST00000574867 FAM24BQ8N5W8 94 aa12.74□□□□□ -0.37
NUP88-210ENST00000574867 LRRC20Q8TCA0 184 aa12.74□□□□□ -0.37
NUP88-210ENST00000574867 BOLA1Q9Y3E2 137 aa12.74□□□□□ -0.37
NUP88-210ENST00000574867 H3BQ15 152 aa12.73□□□□□ -0.37
NUP88-210ENST00000574867 ZNF688P0C7X2 276 aa12.73□□□□□ -0.37
NUP88-210ENST00000574867 Q8N1Y9 231 aa12.73□□□□□ -0.37
NUP88-210ENST00000574867 RNF141Q8WVD5 230 aa12.73□□□□□ -0.37
NUP88-210ENST00000574867 FXYD5Q96DB9 178 aa12.73□□□□□ -0.37
NUP88-210ENST00000574867 ZNF503Q96F45 646 aa12.73□□□□□ -0.37
NUP88-210ENST00000574867 C19orf73Q9NVV2 129 aa12.73□□□□□ -0.37
NUP88-210ENST00000574867 TRBV19A0A075B6N1 114 aa12.73□□□□□ -0.37
NUP88-210ENST00000574867 OR10J4P0C629 311 aa12.73□□□□□ -0.37
NUP88-210ENST00000574867 ZNF586Q9NXT0 402 aa12.73□□□□□ -0.37
NUP88-210ENST00000574867 UBQLN2Q9UHD9 624 aa12.73□□□□□ -0.37
NUP88-210ENST00000574867 CXorf1O96002 111 aa12.72□□□□□ -0.37
NUP88-210ENST00000574867 PRB2P02812 416 aaPredicted RBP12.72□□□□□ -0.37
NUP88-210ENST00000574867 ARL14EPLP0DKL9 152 aa12.72□□□□□ -0.37
NUP88-210ENST00000574867 ZNF726P1Q15940 193 aa12.72□□□□□ -0.37
NUP88-210ENST00000574867 FAM213BQ8TBF2 198 aa12.72□□□□□ -0.37
NUP88-210ENST00000574867 ZNF331Q9NQX6 463 aaPredicted RBP12.72□□□□□ -0.37
NUP88-210ENST00000574867 CLEC5AQ9NY25 188 aa12.72□□□□□ -0.37
NUP88-210ENST00000574867 PLA2G2EQ9NZK7 142 aa12.72□□□□□ -0.37
NUP88-210ENST00000574867 HMGB3O15347 200 aaKnown RBP12.71□□□□□ -0.37
NUP88-210ENST00000574867 NBEAP1P0C6P0 100 aa12.71□□□□□ -0.37
NUP88-210ENST00000574867 SULT1A2P50226 295 aa12.71□□□□□ -0.37
NUP88-210ENST00000574867 DEFB131AP59861 70 aa12.71□□□□□ -0.37
NUP88-210ENST00000574867 PSMG4Q5JS54 123 aa12.71□□□□□ -0.37
NUP88-210ENST00000574867 SSX7Q7RTT5 188 aa12.71□□□□□ -0.37
NUP88-210ENST00000574867 SAT2Q96F10 170 aaPredicted RBP12.71□□□□□ -0.37
NUP88-210ENST00000574867 DNAH3Q8TD57 4116 aa12.71□□□□□ -0.37
NUP88-210ENST00000574867 EIF3GO75821 320 aaKnown RBP eCLIP12.71□□□□□ -0.38
NUP88-210ENST00000574867 SNRPCP09234 159 aaKnown RBP12.71□□□□□ -0.38
NUP88-210ENST00000574867 PSG9Q00887 426 aa12.71□□□□□ -0.38
NUP88-210ENST00000574867 TRAV8-2A0A0B4J237 113 aa12.7□□□□□ -0.38
NUP88-210ENST00000574867 MAP1LC3B2A6NCE7 125 aa12.7□□□□□ -0.38
NUP88-210ENST00000574867 H3BTX0 84 aa12.7□□□□□ -0.38
NUP88-210ENST00000574867 K7EIL1 84 aa12.7□□□□□ -0.38
NUP88-210ENST00000574867 SLC17A3O00476 420 aa12.7□□□□□ -0.38
NUP88-210ENST00000574867 FHITP49789 147 aa12.7□□□□□ -0.38
NUP88-210ENST00000574867 BLNKQ8WV28 456 aa12.7□□□□□ -0.38
NUP88-210ENST00000574867 MAP1LC3BQ9GZQ8 125 aa12.7□□□□□ -0.38
NUP88-210ENST00000574867 GCHFRP30047 84 aa12.69□□□□□ -0.38
NUP88-210ENST00000574867 LINC00052Q96N35 136 aa12.69□□□□□ -0.38
NUP88-210ENST00000574867 WFDC10AQ9H1F0 79 aa12.69□□□□□ -0.38
NUP88-210ENST00000574867 TMEM167BQ9NRX6 74 aa12.69□□□□□ -0.38
NUP88-210ENST00000574867 DEFB125Q8N687 156 aa12.69□□□□□ -0.38
NUP88-210ENST00000574867 A8MZ25 164 aa12.68□□□□□ -0.38
NUP88-210ENST00000574867 NDUFB4O95168 129 aa12.68□□□□□ -0.38
NUP88-210ENST00000574867 IGHV4-30-4P0DP06 118 aa12.68□□□□□ -0.38
NUP88-210ENST00000574867 DEFA6Q01524 100 aa12.68□□□□□ -0.38
NUP88-210ENST00000574867 ALKAL2Q6UX46 152 aa12.68□□□□□ -0.38
NUP88-210ENST00000574867 APRG1Q8IVJ8 170 aa12.68□□□□□ -0.38
NUP88-210ENST00000574867 LYPD1Q8N2G4 141 aa12.68□□□□□ -0.38
NUP88-210ENST00000574867 MBD3L1Q8WWY6 194 aa12.68□□□□□ -0.38
NUP88-210ENST00000574867 AAMDCQ9H7C9 122 aa12.68□□□□□ -0.38
NUP88-210ENST00000574867 RNF182Q8N6D2 247 aa12.68□□□□□ -0.38
NUP88-210ENST00000574867 SUN5Q8TC36 379 aa12.68□□□□□ -0.38
NUP88-210ENST00000574867 SRD5A3Q9H8P0 318 aa12.68□□□□□ -0.38
NUP88-210ENST00000574867 H2AFB1P0C5Y9 115 aa12.67□□□□□ -0.38
NUP88-210ENST00000574867 PSG3Q16557 428 aa12.67□□□□□ -0.38
NUP88-210ENST00000574867 FAM74A1Q5RGS3 127 aa12.67□□□□□ -0.38
NUP88-210ENST00000574867 IQCF2Q8IXL9 164 aa12.67□□□□□ -0.38
NUP88-210ENST00000574867 MRPL53Q96EL3 112 aaKnown RBP12.67□□□□□ -0.38
NUP88-210ENST00000574867 C20orf173Q96LM9 149 aa12.67□□□□□ -0.38
NUP88-210ENST00000574867 TUBA4BQ9H853 241 aa12.67□□□□□ -0.38
NUP88-210ENST00000574867 PRELID1Q9Y255 219 aa12.67□□□□□ -0.38
NUP88-210ENST00000574867 IGFL4Q6B9Z1 124 aa12.66□□□□□ -0.38
NUP88-210ENST00000574867 FOXI2Q6ZQN5 318 aa12.66□□□□□ -0.38
NUP88-210ENST00000574867 ZNF738Q8NE65 137 aa12.66□□□□□ -0.38
NUP88-210ENST00000574867 MRAPQ8TCY5 172 aa12.66□□□□□ -0.38
NUP88-210ENST00000574867 SFT2D1Q8WV19 159 aa12.66□□□□□ -0.38
NUP88-210ENST00000574867 FGF8P55075 233 aaPredicted RBP12.66□□□□□ -0.38
NUP88-210ENST00000574867 ZNF124Q15973 351 aa12.65□□□□□ -0.38
NUP88-210ENST00000574867 CITED4Q96RK1 184 aa12.65□□□□□ -0.38
NUP88-210ENST00000574867 TEX46H3BTG2 121 aa12.65□□□□□ -0.39
NUP88-210ENST00000574867 HLA-DMBP28068 263 aa12.65□□□□□ -0.39
NUP88-210ENST00000574867 RANP62826 216 aaKnown RBP12.65□□□□□ -0.39
NUP88-210ENST00000574867 EBLN2Q6P2I7 272 aa12.65□□□□□ -0.39
NUP88-210ENST00000574867 Q9H3A6 140 aa12.65□□□□□ -0.39
NUP88-210ENST00000574867 SAV1Q9H4B6 383 aaPredicted RBP12.65□□□□□ -0.39
NUP88-210ENST00000574867 TRAV1-1A0A0B4J248 108 aa12.64□□□□□ -0.39
NUP88-210ENST00000574867 ZNF705EA8MWA4 302 aaPredicted RBP12.64□□□□□ -0.39
NUP88-210ENST00000574867 HLA-DRB4P13762 266 aa12.64□□□□□ -0.39
NUP88-210ENST00000574867 ICAM4Q14773 271 aa12.64□□□□□ -0.39
NUP88-210ENST00000574867 ACTL10Q5JWF8 245 aa12.64□□□□□ -0.39
NUP88-210ENST00000574867 STHQ8IWL8 128 aa12.64□□□□□ -0.39
NUP88-210ENST00000574867 EXOC3-AS1Q8N2X6 119 aa12.64□□□□□ -0.39
NUP88-210ENST00000574867 RPUSD4Q96CM3 377 aaKnown RBP12.64□□□□□ -0.39
NUP88-210ENST00000574867 HLA-DRB4X5D2U9 266 aa12.64□□□□□ -0.39
NUP88-210ENST00000574867 HBE1P02100 147 aa12.63□□□□□ -0.39
NUP88-210ENST00000574867 DEFB121Q5J5C9 76 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms