RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 NEURL3Q96EH8 262 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 BORCS8Q96FH0 119 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 AP1S3Q96PC3 154 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 NMNAT3Q96T66 252 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 FXYD6Q9H0Q3 95 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 OTORQ9NRC9 128 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 ASF1BQ9NVP2 202 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 UQCR10Q9UDW1 63 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 CACFD1Q9UGQ2 172 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 ANAPC10Q9UM13 185 aa2.59□□□□□ -1.99
NUP88-208ENST00000574087 ZNF638Q14966 1978 aaKnown RBP2.59□□□□□ -2
NUP88-208ENST00000574087 TJP1Q07157 1748 aa2.59□□□□□ -2
NUP88-208ENST00000574087 RBBP6Q7Z6E9 1792 aaKnown RBP2.59□□□□□ -2
NUP88-208ENST00000574087 SLX4Q8IY92 1834 aa2.58□□□□□ -2
NUP88-208ENST00000574087 PXDNQ92626 1479 aa2.58□□□□□ -2
NUP88-208ENST00000574087 SCN10AQ9Y5Y9 1956 aa2.58□□□□□ -2
NUP88-208ENST00000574087 DOCK6Q96HP0 2047 aa2.58□□□□□ -2
NUP88-208ENST00000574087 IGHV3-74A0A0B4J1X5 117 aa2.58□□□□□ -2
NUP88-208ENST00000574087 IGHV5-10-1A0A0J9YXX1 117 aa2.58□□□□□ -2
NUP88-208ENST00000574087 ZNF727A8MUV8 499 aa2.58□□□□□ -2
NUP88-208ENST00000574087 H3BP45 60 aa2.58□□□□□ -2
NUP88-208ENST00000574087 K7EP34 96 aa2.58□□□□□ -2
NUP88-208ENST00000574087 UPK2O00526 184 aa2.58□□□□□ -2
NUP88-208ENST00000574087 SOCS1O15524 211 aa2.58□□□□□ -2
NUP88-208ENST00000574087 UBL3O95164 117 aa2.58□□□□□ -2
NUP88-208ENST00000574087 APOMO95445 188 aa2.58□□□□□ -2
NUP88-208ENST00000574087 SFTA3P0C7M3 94 aa2.58□□□□□ -2
NUP88-208ENST00000574087 SEC11BP0C7V7 166 aa2.58□□□□□ -2
NUP88-208ENST00000574087 LINC00032P0C843 101 aa2.58□□□□□ -2
NUP88-208ENST00000574087 ADCYAP1P18509 176 aa2.58□□□□□ -2
NUP88-208ENST00000574087 CD70P32970 193 aa2.58□□□□□ -2
NUP88-208ENST00000574087 SNRPGP62308 76 aaKnown RBP2.58□□□□□ -2
NUP88-208ENST00000574087 DYNLT1P63172 113 aa2.58□□□□□ -2
NUP88-208ENST00000574087 QRFPP83859 136 aa2.58□□□□□ -2
NUP88-208ENST00000574087 AKR1C1Q04828 323 aa2.58□□□□□ -2
NUP88-208ENST00000574087 ERCC8Q13216 396 aa2.58□□□□□ -2
NUP88-208ENST00000574087 MSMO1Q15800 293 aa2.58□□□□□ -2
NUP88-208ENST00000574087 SP6Q3SY56 376 aa2.58□□□□□ -2
NUP88-208ENST00000574087 OR2T2Q6IF00 324 aa2.58□□□□□ -2
NUP88-208ENST00000574087 MRPL54Q6P161 138 aaKnown RBP2.58□□□□□ -2
NUP88-208ENST00000574087 SSX8Q7RTT4 187 aa2.58□□□□□ -2
NUP88-208ENST00000574087 ZFP62Q8NB50 900 aaPredicted RBP2.58□□□□□ -2
NUP88-208ENST00000574087 OR10J6PQ8NGY7 276 aa2.58□□□□□ -2
NUP88-208ENST00000574087 OR4K13Q8NH42 304 aa2.58□□□□□ -2
NUP88-208ENST00000574087 LINC00526Q96FQ7 95 aa2.58□□□□□ -2
NUP88-208ENST00000574087 SPACA5Q96QH8 159 aa2.58□□□□□ -2
NUP88-208ENST00000574087 IMUPQ9GZP8 106 aa2.58□□□□□ -2
NUP88-208ENST00000574087 C16orf95Q9H693 158 aa2.58□□□□□ -2
NUP88-208ENST00000574087 ZNF355PQ9NSJ1 428 aa2.58□□□□□ -2
NUP88-208ENST00000574087 ABRACLQ9P1F3 81 aa2.58□□□□□ -2
NUP88-208ENST00000574087 PCTPQ9UKL6 214 aa2.58□□□□□ -2
NUP88-208ENST00000574087 LSM2Q9Y333 95 aaKnown RBP2.58□□□□□ -2
NUP88-208ENST00000574087 FIS1Q9Y3D6 152 aa2.58□□□□□ -2
NUP88-208ENST00000574087 DDX60LQ5H9U9 1706 aaKnown RBP2.58□□□□□ -2
NUP88-208ENST00000574087 DOCK5Q9H7D0 1870 aa2.58□□□□□ -2
NUP88-208ENST00000574087 COL1A1P02452 1464 aaPredicted RBP2.58□□□□□ -2
NUP88-208ENST00000574087 CHD3Q12873 2000 aaKnown RBP2.58□□□□□ -2
NUP88-208ENST00000574087 FANCMQ8IYD8 2048 aa2.58□□□□□ -2
NUP88-208ENST00000574087 CABIN1Q9Y6J0 2220 aa2.57□□□□□ -2
NUP88-208ENST00000574087 C5P01031 1676 aa2.57□□□□□ -2
NUP88-208ENST00000574087 UBR1Q8IWV7 1749 aa2.57□□□□□ -2
NUP88-208ENST00000574087 KMT2EQ8IZD2 1858 aa2.57□□□□□ -2
NUP88-208ENST00000574087 TRAV27A0A087WT01 109 aa2.57□□□□□ -2
NUP88-208ENST00000574087 A0A087WWC5 75 aa2.57□□□□□ -2
NUP88-208ENST00000574087 TRAV8-3A0A0A6YYJ7 113 aa2.57□□□□□ -2
NUP88-208ENST00000574087 IGHV2-26A0A0B4J1V2 119 aa2.57□□□□□ -2
NUP88-208ENST00000574087 OR2T8A6NH00 312 aa2.57□□□□□ -2
NUP88-208ENST00000574087 HIST1H2BKO60814 126 aa2.57□□□□□ -2
NUP88-208ENST00000574087 LYZL6O75951 148 aa2.57□□□□□ -2
NUP88-208ENST00000574087 NAPSAO96009 420 aa2.57□□□□□ -2
NUP88-208ENST00000574087 SOD1P00441 154 aa2.57□□□□□ -2
NUP88-208ENST00000574087 HRASP01112 189 aa2.57□□□□□ -2
NUP88-208ENST00000574087 HIST1H2BJP06899 126 aa2.57□□□□□ -2
NUP88-208ENST00000574087 CECR9P0C854 216 aa2.57□□□□□ -2
NUP88-208ENST00000574087 IGHV1-8P0DP01 117 aa2.57□□□□□ -2
NUP88-208ENST00000574087 CTSEP14091 401 aa2.57□□□□□ -2
NUP88-208ENST00000574087 HIST1H2BOP23527 126 aa2.57□□□□□ -2
NUP88-208ENST00000574087 HIST1H2BBP33778 126 aa2.57□□□□□ -2
NUP88-208ENST00000574087 HIST1H2BDP58876 126 aa2.57□□□□□ -2
NUP88-208ENST00000574087 HIST1H2BCP62807 126 aa2.57□□□□□ -2
NUP88-208ENST00000574087 SYCNQ0VAF6 134 aa2.57□□□□□ -2
NUP88-208ENST00000574087 HIST2H2BEQ16778 126 aa2.57□□□□□ -2
NUP88-208ENST00000574087 HIST2H2BFQ5QNW6 126 aaPredicted RBP2.57□□□□□ -2
NUP88-208ENST00000574087 ZNF678Q5SXM1 525 aa2.57□□□□□ -2
NUP88-208ENST00000574087 C1orf140Q5VVS0 124 aa2.57□□□□□ -2
NUP88-208ENST00000574087 MORN3Q6PF18 240 aaPredicted RBP2.57□□□□□ -2
NUP88-208ENST00000574087 Q6ZS92 163 aa2.57□□□□□ -2
NUP88-208ENST00000574087 NTM-AS1Q6ZSK4 140 aa2.57□□□□□ -2
NUP88-208ENST00000574087 SLC25A26Q70HW3 274 aa2.57□□□□□ -2
NUP88-208ENST00000574087 AAED1Q7RTV5 226 aa2.57□□□□□ -2
NUP88-208ENST00000574087 ATP5L2Q7Z4Y8 100 aa2.57□□□□□ -2
NUP88-208ENST00000574087 KTN1-AS1Q86SY8 53 aa2.57□□□□□ -2
NUP88-208ENST00000574087 WDR86Q86TI4 376 aa2.57□□□□□ -2
NUP88-208ENST00000574087 RNF182Q8N6D2 247 aa2.57□□□□□ -2
NUP88-208ENST00000574087 OR51H1Q8NH63 302 aa2.57□□□□□ -2
NUP88-208ENST00000574087 ATP6V0E2Q8NHE4 81 aa2.57□□□□□ -2
NUP88-208ENST00000574087 SGMS2Q8NHU3 365 aa2.57□□□□□ -2
NUP88-208ENST00000574087 ZNF721Q8TF20 911 aa2.57□□□□□ -2
NUP88-208ENST00000574087 TWIST2Q8WVJ9 160 aa2.57□□□□□ -2
NUP88-208ENST00000574087 HIST1H2BHQ93079 126 aa2.57□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms