RNA–Protein interactions for RNA: ENST00000572270.1

CCDC40-208, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 460 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-208ENST00000572270 TM2D2Q9BX73 214 aa8.61□□□□□ -1.03
CCDC40-208ENST00000572270 PARD6GQ9BYG4 376 aaPredicted RBP8.61□□□□□ -1.03
CCDC40-208ENST00000572270 COPZ2Q9P299 210 aa8.61□□□□□ -1.03
CCDC40-208ENST00000572270 CACFD1Q9UGQ2 172 aa8.61□□□□□ -1.03
CCDC40-208ENST00000572270 TRAV12-3A0A0B4J271 114 aa8.6□□□□□ -1.03
CCDC40-208ENST00000572270 TNFSF8P32971 234 aa8.6□□□□□ -1.03
CCDC40-208ENST00000572270 SDC2P34741 201 aa8.6□□□□□ -1.03
CCDC40-208ENST00000572270 WFDC2Q14508 124 aa8.6□□□□□ -1.03
CCDC40-208ENST00000572270 Q6ZRU5 148 aa8.6□□□□□ -1.03
CCDC40-208ENST00000572270 LGI3Q8N145 548 aa8.6□□□□□ -1.03
CCDC40-208ENST00000572270 CCDC71LQ8N9Z2 235 aa8.6□□□□□ -1.03
CCDC40-208ENST00000572270 TRGV4A0A0C4DH28 118 aa8.59□□□□□ -1.03
CCDC40-208ENST00000572270 LECT2O14960 151 aa8.59□□□□□ -1.03
CCDC40-208ENST00000572270 B3GALNT1O75752 331 aa8.59□□□□□ -1.03
CCDC40-208ENST00000572270 IGLV2-11P01706 119 aa8.59□□□□□ -1.03
CCDC40-208ENST00000572270 RPL7P18124 248 aaKnown RBP8.59□□□□□ -1.03
CCDC40-208ENST00000572270 LINC01556Q5JQF7 62 aa8.59□□□□□ -1.03
CCDC40-208ENST00000572270 GPR107Q5VW38 600 aa8.59□□□□□ -1.03
CCDC40-208ENST00000572270 MORN5Q5VZ52 161 aa8.59□□□□□ -1.03
CCDC40-208ENST00000572270 BPIFCQ8NFQ6 507 aa8.59□□□□□ -1.03
CCDC40-208ENST00000572270 VGLL1Q99990 258 aa8.59□□□□□ -1.03
CCDC40-208ENST00000572270 TXNDC17Q9BRA2 123 aa8.59□□□□□ -1.03
CCDC40-208ENST00000572270 SSR3Q9UNL2 185 aa8.59□□□□□ -1.03
CCDC40-208ENST00000572270 RBFOX3A6NFN3 312 aa8.58□□□□□ -1.04
CCDC40-208ENST00000572270 SPINK4O60575 86 aa8.58□□□□□ -1.04
CCDC40-208ENST00000572270 CLEC2LP0C7M8 214 aa8.58□□□□□ -1.04
CCDC40-208ENST00000572270 GATA2P23769 480 aaPredicted RBP8.58□□□□□ -1.04
CCDC40-208ENST00000572270 ZBTB8BQ8NAP8 495 aaPredicted RBP8.58□□□□□ -1.04
CCDC40-208ENST00000572270 C11orf72Q8NBR9 251 aa8.58□□□□□ -1.04
CCDC40-208ENST00000572270 DTD1Q8TEA8 209 aa8.58□□□□□ -1.04
CCDC40-208ENST00000572270 MRPL32Q9BYC8 188 aaKnown RBP8.58□□□□□ -1.04
CCDC40-208ENST00000572270 CRYM-AS1A6NIL9 109 aa8.57□□□□□ -1.04
CCDC40-208ENST00000572270 ORM1P02763 201 aa8.57□□□□□ -1.04
CCDC40-208ENST00000572270 LEPP41159 167 aa8.57□□□□□ -1.04
CCDC40-208ENST00000572270 FHL2Q14192 279 aa8.57□□□□□ -1.04
CCDC40-208ENST00000572270 UBE2NLQ5JXB2 153 aa8.57□□□□□ -1.04
CCDC40-208ENST00000572270 BOLA1Q9Y3E2 137 aa8.57□□□□□ -1.04
CCDC40-208ENST00000572270 IGKV1OR2-108A0A075B7D4 117 aa8.56□□□□□ -1.04
CCDC40-208ENST00000572270 A0A087X0K7 114 aa8.56□□□□□ -1.04
CCDC40-208ENST00000572270 H3BRN7 92 aa8.56□□□□□ -1.04
CCDC40-208ENST00000572270 CDS2O95674 445 aa8.56□□□□□ -1.04
CCDC40-208ENST00000572270 PPT1P50897 306 aa8.56□□□□□ -1.04
CCDC40-208ENST00000572270 TCL1AP56279 114 aa8.56□□□□□ -1.04
CCDC40-208ENST00000572270 ATP5IP56385 69 aaPredicted RBP8.56□□□□□ -1.04
CCDC40-208ENST00000572270 RAP2BP61225 183 aa8.56□□□□□ -1.04
CCDC40-208ENST00000572270 MEF2DQ14814 521 aa8.56□□□□□ -1.04
CCDC40-208ENST00000572270 THAP8Q8NA92 274 aa8.56□□□□□ -1.04
CCDC40-208ENST00000572270 OR1S1Q8NH92 325 aa8.56□□□□□ -1.04
CCDC40-208ENST00000572270 ZFAND1Q8TCF1 268 aa8.56□□□□□ -1.04
CCDC40-208ENST00000572270 BLNKQ8WV28 456 aa8.56□□□□□ -1.04
CCDC40-208ENST00000572270 SLC25A31Q9H0C2 315 aa8.56□□□□□ -1.04
CCDC40-208ENST00000572270 TMEM222Q9H0R3 208 aa8.56□□□□□ -1.04
CCDC40-208ENST00000572270 MRPL16Q9NX20 251 aaKnown RBP8.56□□□□□ -1.04
CCDC40-208ENST00000572270 KLF12Q9Y4X4 402 aa8.56□□□□□ -1.04
CCDC40-208ENST00000572270 SULT1A3P0DMM9 295 aa8.55□□□□□ -1.04
CCDC40-208ENST00000572270 SULT1A4P0DMN0 295 aa8.55□□□□□ -1.04
CCDC40-208ENST00000572270 EIF4E3Q8N5X7 224 aaKnown RBP8.55□□□□□ -1.04
CCDC40-208ENST00000572270 GPX8Q8TED1 209 aa8.55□□□□□ -1.04
CCDC40-208ENST00000572270 DPH3P1Q9H4G8 78 aa8.55□□□□□ -1.04
CCDC40-208ENST00000572270 TRAV8-6A0A0B4J262 113 aa8.54□□□□□ -1.04
CCDC40-208ENST00000572270 C9JCJ5 164 aa8.54□□□□□ -1.04
CCDC40-208ENST00000572270 TMEM127O75204 238 aa8.54□□□□□ -1.04
CCDC40-208ENST00000572270 CCNKO75909 580 aa8.54□□□□□ -1.04
CCDC40-208ENST00000572270 TNFAIP8O95379 198 aa8.54□□□□□ -1.04
CCDC40-208ENST00000572270 IGHV3-30P01768 117 aa8.54□□□□□ -1.04
CCDC40-208ENST00000572270 IGHV3-33P01772 117 aa8.54□□□□□ -1.04
CCDC40-208ENST00000572270 IGHV3-30-3P0DP02 117 aa8.54□□□□□ -1.04
CCDC40-208ENST00000572270 IGHV3-30-5P0DP03 117 aa8.54□□□□□ -1.04
CCDC40-208ENST00000572270 RAB11AP62491 216 aa8.54□□□□□ -1.04
CCDC40-208ENST00000572270 LAGE3Q14657 143 aa8.54□□□□□ -1.04
CCDC40-208ENST00000572270 ANXA2RQ3ZCQ2 193 aa8.54□□□□□ -1.04
CCDC40-208ENST00000572270 TMEM268Q5VZI3 342 aa8.54□□□□□ -1.04
CCDC40-208ENST00000572270 SELENOHQ8IZQ5 122 aaKnown RBP8.54□□□□□ -1.04
CCDC40-208ENST00000572270 LHFPL5Q8TAF8 219 aa8.54□□□□□ -1.04
CCDC40-208ENST00000572270 ZNF431Q8TF32 576 aaPredicted RBP8.54□□□□□ -1.04
CCDC40-208ENST00000572270 SHANK2-AS3Q9BTD1 123 aa8.54□□□□□ -1.04
CCDC40-208ENST00000572270 RBKSQ9H477 322 aa8.54□□□□□ -1.04
CCDC40-208ENST00000572270 BLOC1S6Q9UL45 172 aa8.54□□□□□ -1.04
CCDC40-208ENST00000572270 HIGD1AQ9Y241 93 aa8.54□□□□□ -1.04
CCDC40-208ENST00000572270 CXCL2P19875 107 aa8.53□□□□□ -1.04
CCDC40-208ENST00000572270 OR10J3Q5JRS4 329 aa8.53□□□□□ -1.04
CCDC40-208ENST00000572270 IBA57Q5T440 356 aaKnown RBP8.53□□□□□ -1.04
CCDC40-208ENST00000572270 LCN15Q6UWW0 184 aa8.53□□□□□ -1.04
CCDC40-208ENST00000572270 C9orf47Q6ZRZ4 202 aa8.53□□□□□ -1.04
CCDC40-208ENST00000572270 SH2D6Q7Z4S9 175 aa8.53□□□□□ -1.04
CCDC40-208ENST00000572270 LHFPL1Q86WI0 220 aa8.53□□□□□ -1.04
CCDC40-208ENST00000572270 ODF3Q96PU9 254 aa8.53□□□□□ -1.04
CCDC40-208ENST00000572270 SLC50A1Q9BRV3 221 aa8.53□□□□□ -1.04
CCDC40-208ENST00000572270 PAIP2BQ9ULR5 123 aaKnown RBP8.53□□□□□ -1.04
CCDC40-208ENST00000572270 TEX13DA0A0J9YY54 714 aaPredicted RBP8.52□□□□□ -1.05
CCDC40-208ENST00000572270 C7orf71A4D174 169 aa8.52□□□□□ -1.05
CCDC40-208ENST00000572270 SLC25A5P05141 298 aaKnown RBP8.52□□□□□ -1.05
CCDC40-208ENST00000572270 ZNF846Q147U1 533 aa8.52□□□□□ -1.05
CCDC40-208ENST00000572270 RNASE10Q5GAN6 216 aaKnown RBP8.52□□□□□ -1.05
CCDC40-208ENST00000572270 TEPPQ6URK8 271 aa8.52□□□□□ -1.05
CCDC40-208ENST00000572270 S100A7AQ86SG5 101 aa8.52□□□□□ -1.05
CCDC40-208ENST00000572270 SAMD12Q8N8I0 201 aa8.52□□□□□ -1.05
CCDC40-208ENST00000572270 OR13C8Q8NGS7 320 aa8.52□□□□□ -1.05
CCDC40-208ENST00000572270 GLYATL2Q8WU03 294 aa8.52□□□□□ -1.05
CCDC40-208ENST00000572270 PAXXQ9BUH6 204 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms