RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 NHLH1Q02575 133 aa8.53□□□□□ -1.04
CCDC40-207ENST00000572253 PRSS33Q8NF86 280 aa8.53□□□□□ -1.04
CCDC40-207ENST00000572253 OR8A1Q8NGG7 326 aa8.53□□□□□ -1.04
CCDC40-207ENST00000572253 GATD1Q8NB37 220 aa8.53□□□□□ -1.04
CCDC40-207ENST00000572253 OR2T8A6NH00 312 aa8.52□□□□□ -1.05
CCDC40-207ENST00000572253 K7EM74 188 aa8.52□□□□□ -1.05
CCDC40-207ENST00000572253 FCGR2BP31994 310 aaPredicted RBP8.52□□□□□ -1.05
CCDC40-207ENST00000572253 SEC11AP67812 179 aa8.52□□□□□ -1.05
CCDC40-207ENST00000572253 SIGLEC15Q6ZMC9 328 aa8.52□□□□□ -1.05
CCDC40-207ENST00000572253 PPIAL4CA0A0B4J2A2 164 aa8.52□□□□□ -1.05
CCDC40-207ENST00000572253 GNG7O60262 68 aa8.52□□□□□ -1.05
CCDC40-207ENST00000572253 PPIAL4GP0DN37 164 aa8.52□□□□□ -1.05
CCDC40-207ENST00000572253 AMMECR1LQ6DCA0 310 aa8.52□□□□□ -1.05
CCDC40-207ENST00000572253 GFRALQ6UXV0 394 aa8.52□□□□□ -1.05
CCDC40-207ENST00000572253 PRELID3AQ96N28 172 aa8.52□□□□□ -1.05
CCDC40-207ENST00000572253 SCGB2A1O75556 95 aa8.52□□□□□ -1.05
CCDC40-207ENST00000572253 DSPP15924 2871 aaKnown RBP8.51□□□□□ -1.05
CCDC40-207ENST00000572253 MALRD1Q5VYJ5 2156 aa8.51□□□□□ -1.05
CCDC40-207ENST00000572253 LOC389332A0A1B0GUA5 103 aa8.51□□□□□ -1.05
CCDC40-207ENST00000572253 B9A039 149 aa8.51□□□□□ -1.05
CCDC40-207ENST00000572253 APOBEC3AP31941 199 aaPredicted RBP8.51□□□□□ -1.05
CCDC40-207ENST00000572253 PRB3Q04118 309 aaPredicted RBP8.51□□□□□ -1.05
CCDC40-207ENST00000572253 PDE6HQ13956 83 aa8.51□□□□□ -1.05
CCDC40-207ENST00000572253 ORMDL3Q8N138 153 aa8.51□□□□□ -1.05
CCDC40-207ENST00000572253 C17orf77Q96MU5 243 aa8.51□□□□□ -1.05
CCDC40-207ENST00000572253 DMDP11532 3685 aa8.51□□□□□ -1.05
CCDC40-207ENST00000572253 A6NDN8 102 aa8.51□□□□□ -1.05
CCDC40-207ENST00000572253 COL6A6A6NMZ7 2263 aa8.51□□□□□ -1.05
CCDC40-207ENST00000572253 E7EQL1 145 aa8.51□□□□□ -1.05
CCDC40-207ENST00000572253 KLK10O43240 276 aa8.51□□□□□ -1.05
CCDC40-207ENST00000572253 TMEM97Q5BJF2 176 aa8.51□□□□□ -1.05
CCDC40-207ENST00000572253 DPF1Q92782 380 aa8.51□□□□□ -1.05
CCDC40-207ENST00000572253 TMSB15BA0A087X1C1 80 aa8.5□□□□□ -1.05
CCDC40-207ENST00000572253 K7EIM0 57 aa8.5□□□□□ -1.05
CCDC40-207ENST00000572253 CD3EP07766 207 aa8.5□□□□□ -1.05
CCDC40-207ENST00000572253 DLX1P56177 255 aa8.5□□□□□ -1.05
CCDC40-207ENST00000572253 PSG9Q00887 426 aa8.5□□□□□ -1.05
CCDC40-207ENST00000572253 ZNF491Q8N8L2 437 aa8.5□□□□□ -1.05
CCDC40-207ENST00000572253 OR1N2Q8NGR9 330 aa8.5□□□□□ -1.05
CCDC40-207ENST00000572253 ZNF414Q96IQ9 312 aa8.5□□□□□ -1.05
CCDC40-207ENST00000572253 ONECUT1Q9UBC0 465 aa8.5□□□□□ -1.05
CCDC40-207ENST00000572253 D6R8Y8 96 aa8.5□□□□□ -1.05
CCDC40-207ENST00000572253 IFI27P40305 119 aaPredicted RBP8.5□□□□□ -1.05
CCDC40-207ENST00000572253 LDLRAD2Q5SZI1 272 aa8.5□□□□□ -1.05
CCDC40-207ENST00000572253 ZNF493Q6ZR52 646 aa8.5□□□□□ -1.05
CCDC40-207ENST00000572253 C7orf71A4D174 169 aa8.5□□□□□ -1.05
CCDC40-207ENST00000572253 J3QR89 54 aa8.5□□□□□ -1.05
CCDC40-207ENST00000572253 K7ERU9 68 aa8.5□□□□□ -1.05
CCDC40-207ENST00000572253 MFAP4P55083 255 aa8.5□□□□□ -1.05
CCDC40-207ENST00000572253 LYZL1Q6UWQ5 148 aa8.5□□□□□ -1.05
CCDC40-207ENST00000572253 ASCL2Q99929 193 aa8.5□□□□□ -1.05
CCDC40-207ENST00000572253 M0R3E3 92 aa8.49□□□□□ -1.05
CCDC40-207ENST00000572253 FAM104BQ5XKR9 115 aa8.49□□□□□ -1.05
CCDC40-207ENST00000572253 CST9LQ9H4G1 147 aa8.49□□□□□ -1.05
CCDC40-207ENST00000572253 FBLL1A6NHQ2 334 aaKnown RBP8.49□□□□□ -1.05
CCDC40-207ENST00000572253 SHISA9B4DS77 424 aa8.49□□□□□ -1.05
CCDC40-207ENST00000572253 TIMM23O14925 209 aa8.49□□□□□ -1.05
CCDC40-207ENST00000572253 NBR2O15453 112 aa8.49□□□□□ -1.05
CCDC40-207ENST00000572253 CEACAM3P40198 252 aa8.49□□□□□ -1.05
CCDC40-207ENST00000572253 LGALS9BQ3B8N2 356 aa8.49□□□□□ -1.05
CCDC40-207ENST00000572253 LGALS9CQ6DKI2 356 aa8.49□□□□□ -1.05
CCDC40-207ENST00000572253 TNRC18O15417 2968 aaPredicted RBP8.49□□□□□ -1.05
CCDC40-207ENST00000572253 SNAI2O43623 268 aa8.49□□□□□ -1.05
CCDC40-207ENST00000572253 HBDP02042 147 aa8.49□□□□□ -1.05
CCDC40-207ENST00000572253 RPL24P83731 157 aaKnown RBP8.49□□□□□ -1.05
CCDC40-207ENST00000572253 C8orf49Q96NF6 230 aa8.49□□□□□ -1.05
CCDC40-207ENST00000572253 SIGLEC8Q9NYZ4 499 aa8.49□□□□□ -1.05
CCDC40-207ENST00000572253 OTOGLQ3ZCN5 2332 aa8.49□□□□□ -1.05
CCDC40-207ENST00000572253 ZGRF1Q86YA3 2104 aa8.49□□□□□ -1.05
CCDC40-207ENST00000572253 HES1Q14469 280 aa8.48□□□□□ -1.05
CCDC40-207ENST00000572253 OCIAD2Q56VL3 154 aa8.48□□□□□ -1.05
CCDC40-207ENST00000572253 GAGE10A6NGK3 116 aa8.48□□□□□ -1.05
CCDC40-207ENST00000572253 SH2D1AO60880 128 aa8.48□□□□□ -1.05
CCDC40-207ENST00000572253 RPL7P18124 248 aaKnown RBP8.48□□□□□ -1.05
CCDC40-207ENST00000572253 CKS2P33552 79 aa8.48□□□□□ -1.05
CCDC40-207ENST00000572253 BMI1P35226 326 aa8.48□□□□□ -1.05
CCDC40-207ENST00000572253 ARL3P36405 182 aa8.48□□□□□ -1.05
CCDC40-207ENST00000572253 Q71RC1 249 aaPredicted RBP8.48□□□□□ -1.05
CCDC40-207ENST00000572253 JKAMPQ9P055 326 aa8.48□□□□□ -1.05
CCDC40-207ENST00000572253 ZNF785A8K8V0 405 aa8.48□□□□□ -1.05
CCDC40-207ENST00000572253 CRIP1P50238 77 aa8.48□□□□□ -1.05
CCDC40-207ENST00000572253 OR9G4Q8NGQ1 327 aa8.48□□□□□ -1.05
CCDC40-207ENST00000572253 COL25A1Q9BXS0 654 aaPredicted RBP8.48□□□□□ -1.05
CCDC40-207ENST00000572253 DPM3Q9P2X0 92 aa8.48□□□□□ -1.05
CCDC40-207ENST00000572253 WI2-2373I1.2A0A1W2PRP0 233 aa8.47□□□□□ -1.05
CCDC40-207ENST00000572253 A1L4Q6 167 aa8.47□□□□□ -1.05
CCDC40-207ENST00000572253 TMEM213A2RRL7 107 aa8.47□□□□□ -1.05
CCDC40-207ENST00000572253 NDUFS8O00217 210 aa8.47□□□□□ -1.05
CCDC40-207ENST00000572253 NCR2O95944 276 aa8.47□□□□□ -1.05
CCDC40-207ENST00000572253 CACNG7P62955 275 aa8.47□□□□□ -1.05
CCDC40-207ENST00000572253 AMN1Q8IY45 258 aa8.47□□□□□ -1.05
CCDC40-207ENST00000572253 THYN1Q9P016 225 aa8.47□□□□□ -1.05
CCDC40-207ENST00000572253 CUL9Q8IWT3 2517 aa8.47□□□□□ -1.05
CCDC40-207ENST00000572253 PPBPP02775 128 aa8.47□□□□□ -1.05
CCDC40-207ENST00000572253 UQCRFS1P47985 274 aa8.47□□□□□ -1.05
CCDC40-207ENST00000572253 LYNX1G3V0Z9 82 aa8.47□□□□□ -1.05
CCDC40-207ENST00000572253 LYNX1P0DP58 116 aa8.47□□□□□ -1.05
CCDC40-207ENST00000572253 HSD52Q0P140 79 aa8.47□□□□□ -1.05
CCDC40-207ENST00000572253 TWIST1Q15672 202 aa8.47□□□□□ -1.05
CCDC40-207ENST00000572253 C2orf91Q6ZV80 131 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms