RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 OR2D3Q8NGH3 330 aa7.78□□□□□ -1.16
VPS53-206ENST00000570359 PGLYRP4Q96LB8 373 aa7.78□□□□□ -1.16
VPS53-206ENST00000570359 BBC3Q96PG8 261 aaPredicted RBP7.78□□□□□ -1.16
VPS53-206ENST00000570359 ARL2-SNX15V9GYD0 113 aa7.78□□□□□ -1.16
VPS53-206ENST00000570359 PMCHP20382 165 aa7.77□□□□□ -1.16
VPS53-206ENST00000570359 SRIP30626 198 aa7.77□□□□□ -1.16
VPS53-206ENST00000570359 MINOS1Q5TGZ0 78 aa7.77□□□□□ -1.16
VPS53-206ENST00000570359 DAZAP1Q96EP5 407 aaKnown RBP7.77□□□□□ -1.16
VPS53-206ENST00000570359 SAMD10Q9BYL1 202 aa7.77□□□□□ -1.16
VPS53-206ENST00000570359 OSTCQ9NRP0 149 aa7.77□□□□□ -1.16
VPS53-206ENST00000570359 MINOS1-NBL1R4GNA1 71 aa7.77□□□□□ -1.16
VPS53-206ENST00000570359 F8W735 103 aaPredicted RBP7.77□□□□□ -1.17
VPS53-206ENST00000570359 CLEC3BP05452 202 aa7.77□□□□□ -1.17
VPS53-206ENST00000570359 HIST1H1EP10412 219 aaKnown RBP7.77□□□□□ -1.17
VPS53-206ENST00000570359 AJUBAQ96IF1 538 aa7.77□□□□□ -1.17
VPS53-206ENST00000570359 SHANK2-AS3Q9BTD1 123 aa7.77□□□□□ -1.17
VPS53-206ENST00000570359 ZNF331Q9NQX6 463 aaPredicted RBP7.77□□□□□ -1.17
VPS53-206ENST00000570359 TIMM8BQ9Y5J9 83 aaPredicted RBP7.77□□□□□ -1.17
VPS53-206ENST00000570359 IGKV2-40A0A087WW87 121 aaPredicted RBP7.76□□□□□ -1.17
VPS53-206ENST00000570359 TOMM40O96008 361 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 IGKV2D-40P01614 121 aaPredicted RBP7.76□□□□□ -1.17
VPS53-206ENST00000570359 TMEM183BQ1AE95 376 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 PVRIGQ6DKI7 326 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 NUP35Q8NFH5 326 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 C7orf69Q9H7B7 122 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 MRPL27Q9P0M9 148 aaKnown RBP7.76□□□□□ -1.17
VPS53-206ENST00000570359 LY96Q9Y6Y9 160 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 H3BRN7 92 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 OVOL3O00110 214 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 P01737 135 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 NTF3P20783 257 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 MYCNOSP40205 109 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 SLAQ13239 276 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 C1orf122Q6ZSJ8 110 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 Q8N6K4 173 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 Q8TAT8 98 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 GPR82Q96P67 336 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 RCHY1Q96PM5 261 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 C1RLQ9NZP8 487 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 THYN1Q9P016 225 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 CREBBPQ92793 2442 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 ZNF705FA8MVS1 300 aaPredicted RBP7.76□□□□□ -1.17
VPS53-206ENST00000570359 ZNF705DP0CH99 300 aaPredicted RBP7.76□□□□□ -1.17
VPS53-206ENST00000570359 ZNF705BP0CI00 300 aaPredicted RBP7.76□□□□□ -1.17
VPS53-206ENST00000570359 TMEM136Q6ZRR5 245 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 GBGT1Q8N5D6 347 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 TP53TG3Q9ULZ0 132 aa7.76□□□□□ -1.17
VPS53-206ENST00000570359 IGKV3-7A0A075B6H7 116 aa7.75□□□□□ -1.17
VPS53-206ENST00000570359 TRBV19A0A075B6N1 114 aa7.75□□□□□ -1.17
VPS53-206ENST00000570359 NPIPB5A8MRT5 1133 aa7.75□□□□□ -1.17
VPS53-206ENST00000570359 IGHV3-11P01762 117 aa7.75□□□□□ -1.17
VPS53-206ENST00000570359 FOXA3P55318 350 aaPredicted RBP7.75□□□□□ -1.17
VPS53-206ENST00000570359 Q86TA4 180 aa7.75□□□□□ -1.17
VPS53-206ENST00000570359 FAM19A2Q8N3H0 131 aa7.75□□□□□ -1.17
VPS53-206ENST00000570359 TTC9CQ8N5M4 171 aa7.75□□□□□ -1.17
VPS53-206ENST00000570359 C8orf49Q96NF6 230 aa7.75□□□□□ -1.17
VPS53-206ENST00000570359 C20orf144Q9BQM9 153 aa7.75□□□□□ -1.17
VPS53-206ENST00000570359 H3BUX3 64 aa7.75□□□□□ -1.17
VPS53-206ENST00000570359 M0QZ24 198 aa7.75□□□□□ -1.17
VPS53-206ENST00000570359 ZNF253O75346 499 aa7.75□□□□□ -1.17
VPS53-206ENST00000570359 APCSP02743 223 aa7.75□□□□□ -1.17
VPS53-206ENST00000570359 CTSGP08311 255 aa7.75□□□□□ -1.17
VPS53-206ENST00000570359 GDF5OSQ5U4N7 250 aa7.75□□□□□ -1.17
VPS53-206ENST00000570359 RNF182Q8N6D2 247 aa7.75□□□□□ -1.17
VPS53-206ENST00000570359 OTORQ9NRC9 128 aa7.75□□□□□ -1.17
VPS53-206ENST00000570359 ZFP30Q9Y2G7 519 aa7.75□□□□□ -1.17
VPS53-206ENST00000570359 POLR3KQ9Y2Y1 108 aaPredicted RBP7.75□□□□□ -1.17
VPS53-206ENST00000570359 TBL2Q9Y4P3 447 aaKnown RBP7.75□□□□□ -1.17
VPS53-206ENST00000570359 SMIM27A0A1W2PRY6 76 aa7.74□□□□□ -1.17
VPS53-206ENST00000570359 IZUMO1RA6ND01 250 aa7.74□□□□□ -1.17
VPS53-206ENST00000570359 VWC2LB2RUY7 222 aa7.74□□□□□ -1.17
VPS53-206ENST00000570359 PLP1P60201 277 aa7.74□□□□□ -1.17
VPS53-206ENST00000570359 YPEL3P61236 119 aaPredicted RBP7.74□□□□□ -1.17
VPS53-206ENST00000570359 CUBNO60494 3623 aa7.74□□□□□ -1.17
VPS53-206ENST00000570359 LINC00310P59036 64 aa7.74□□□□□ -1.17
VPS53-206ENST00000570359 RBX1P62877 108 aa7.74□□□□□ -1.17
VPS53-206ENST00000570359 DMRTA1Q5VZB9 504 aa7.74□□□□□ -1.17
VPS53-206ENST00000570359 C10orf105Q8TEF2 133 aa7.74□□□□□ -1.17
VPS53-206ENST00000570359 ZC2HC1AQ96GY0 325 aa7.74□□□□□ -1.17
VPS53-206ENST00000570359 GRAMD2BQ96HH9 432 aa7.74□□□□□ -1.17
VPS53-206ENST00000570359 FMC1Q96HJ9 113 aa7.74□□□□□ -1.17
VPS53-206ENST00000570359 MIEN1Q9BRT3 115 aa7.74□□□□□ -1.17
VPS53-206ENST00000570359 RPP21Q9H633 154 aaKnown RBP7.74□□□□□ -1.17
VPS53-206ENST00000570359 AAMDCQ9H7C9 122 aa7.74□□□□□ -1.17
VPS53-206ENST00000570359 HIF1ANQ9NWT6 349 aa7.74□□□□□ -1.17
VPS53-206ENST00000570359 SETD2Q9BYW2 2564 aaPredicted RBP7.73□□□□□ -1.17
VPS53-206ENST00000570359 IGHV1-69DA0A0B4J2H0 117 aa7.73□□□□□ -1.17
VPS53-206ENST00000570359 ZNF785A8K8V0 405 aa7.73□□□□□ -1.17
VPS53-206ENST00000570359 BMPR1BO00238 502 aa7.73□□□□□ -1.17
VPS53-206ENST00000570359 IGHV1-69P01742 117 aa7.73□□□□□ -1.17
VPS53-206ENST00000570359 APOHP02749 345 aaPredicted RBP7.73□□□□□ -1.17
VPS53-206ENST00000570359 CDKN1BP46527 198 aa7.73□□□□□ -1.17
VPS53-206ENST00000570359 KRTDAPP60985 99 aa7.73□□□□□ -1.17
VPS53-206ENST00000570359 TMEM95Q3KNT9 176 aa7.73□□□□□ -1.17
VPS53-206ENST00000570359 SIGLEC15Q6ZMC9 328 aa7.73□□□□□ -1.17
VPS53-206ENST00000570359 Q6ZS46 218 aa7.73□□□□□ -1.17
VPS53-206ENST00000570359 ZNF414Q96IQ9 312 aa7.73□□□□□ -1.17
VPS53-206ENST00000570359 SRSF8Q9BRL6 282 aaKnown RBP7.73□□□□□ -1.17
VPS53-206ENST00000570359 RABAC1Q9UI14 185 aa7.73□□□□□ -1.17
VPS53-206ENST00000570359 MYO9AB2RTY4 2548 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms