RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 ATG101Q9BSB4 218 aa6.17□□□□□ -1.42
VPS39-213ENST00000570062 UFC1Q9Y3C8 167 aa6.17□□□□□ -1.42
VPS39-213ENST00000570062 YTHDF2Q9Y5A9 579 aaKnown RBP6.17□□□□□ -1.42
VPS39-213ENST00000570062 SOX21Q9Y651 276 aaPredicted RBP6.17□□□□□ -1.42
VPS39-213ENST00000570062 ARHGAP32A7KAX9 2087 aa6.17□□□□□ -1.42
VPS39-213ENST00000570062 PRRC2AP48634 2157 aaKnown RBP6.17□□□□□ -1.42
VPS39-213ENST00000570062 APCP25054 2843 aa6.17□□□□□ -1.42
VPS39-213ENST00000570062 TET2Q6N021 2002 aaPredicted RBP6.16□□□□□ -1.42
VPS39-213ENST00000570062 A0A087X0K7 114 aa6.16□□□□□ -1.42
VPS39-213ENST00000570062 SH2D7A6NKC9 451 aaPredicted RBP6.16□□□□□ -1.42
VPS39-213ENST00000570062 DNASE2O00115 360 aaPredicted RBP6.16□□□□□ -1.42
VPS39-213ENST00000570062 PEX7O00628 323 aa6.16□□□□□ -1.42
VPS39-213ENST00000570062 BUB3O43684 328 aa6.16□□□□□ -1.42
VPS39-213ENST00000570062 SLC25A5P05141 298 aaKnown RBP6.16□□□□□ -1.42
VPS39-213ENST00000570062 RNASE1P07998 156 aaKnown RBP6.16□□□□□ -1.42
VPS39-213ENST00000570062 IGLC2P0DOY2 106 aa6.16□□□□□ -1.42
VPS39-213ENST00000570062 PYYP10082 97 aa6.16□□□□□ -1.42
VPS39-213ENST00000570062 MYCNOSP40205 109 aa6.16□□□□□ -1.42
VPS39-213ENST00000570062 RPL35P42766 123 aaKnown RBP6.16□□□□□ -1.42
VPS39-213ENST00000570062 UBE2G1P62253 170 aa6.16□□□□□ -1.42
VPS39-213ENST00000570062 RPL23P62829 140 aaKnown RBP6.16□□□□□ -1.42
VPS39-213ENST00000570062 ADIRFQ15847 76 aa6.16□□□□□ -1.42
VPS39-213ENST00000570062 TMEM183BQ1AE95 376 aa6.16□□□□□ -1.42
VPS39-213ENST00000570062 RNF212Q495C1 297 aa6.16□□□□□ -1.42
VPS39-213ENST00000570062 KCNIP4Q6PIL6 250 aa6.16□□□□□ -1.42
VPS39-213ENST00000570062 ZNF329Q86UD4 541 aa6.16□□□□□ -1.42
VPS39-213ENST00000570062 MRPL53Q96EL3 112 aaKnown RBP6.16□□□□□ -1.42
VPS39-213ENST00000570062 NOL4LQ96MY1 436 aaPredicted RBP6.16□□□□□ -1.42
VPS39-213ENST00000570062 ZNF702PQ9H963 129 aa6.16□□□□□ -1.42
VPS39-213ENST00000570062 ZFP30Q9Y2G7 519 aa6.16□□□□□ -1.42
VPS39-213ENST00000570062 KLF12Q9Y4X4 402 aa6.16□□□□□ -1.42
VPS39-213ENST00000570062 TACC2O95359 2948 aa6.15□□□□□ -1.42
VPS39-213ENST00000570062 TRAV9-1A0A075B6T8 112 aa6.15□□□□□ -1.42
VPS39-213ENST00000570062 ZNF785A8K8V0 405 aa6.15□□□□□ -1.42
VPS39-213ENST00000570062 GGTLC3B5MD39 225 aa6.15□□□□□ -1.42
VPS39-213ENST00000570062 H7BYZ3 331 aa6.15□□□□□ -1.42
VPS39-213ENST00000570062 ISLRO14498 428 aa6.15□□□□□ -1.42
VPS39-213ENST00000570062 IGHV3-23P01764 117 aa6.15□□□□□ -1.42
VPS39-213ENST00000570062 CDX1P47902 265 aaPredicted RBP6.15□□□□□ -1.42
VPS39-213ENST00000570062 MORN5Q5VZ52 161 aa6.15□□□□□ -1.42
VPS39-213ENST00000570062 ATRAIDQ6UW56 229 aa6.15□□□□□ -1.42
VPS39-213ENST00000570062 LINC01551Q86U37 167 aa6.15□□□□□ -1.42
VPS39-213ENST00000570062 MYOZ3Q8TDC0 251 aa6.15□□□□□ -1.42
VPS39-213ENST00000570062 C2CD4CQ8TF44 421 aa6.15□□□□□ -1.42
VPS39-213ENST00000570062 BLNKQ8WV28 456 aa6.15□□□□□ -1.42
VPS39-213ENST00000570062 ZNF414Q96IQ9 312 aa6.15□□□□□ -1.42
VPS39-213ENST00000570062 Q9H3A6 140 aa6.15□□□□□ -1.42
VPS39-213ENST00000570062 C16orf95Q9H693 158 aa6.15□□□□□ -1.42
VPS39-213ENST00000570062 DAZ1Q9NQZ3 744 aaKnown RBP6.15□□□□□ -1.42
VPS39-213ENST00000570062 ZNF586Q9NXT0 402 aa6.15□□□□□ -1.42
VPS39-213ENST00000570062 LINC00527Q9UJ94 153 aa6.15□□□□□ -1.42
VPS39-213ENST00000570062 U3KQE9 123 aa6.15□□□□□ -1.42
VPS39-213ENST00000570062 DNAJC9-AS1A6NH13 148 aa6.14□□□□□ -1.43
VPS39-213ENST00000570062 M0QZ24 198 aa6.14□□□□□ -1.43
VPS39-213ENST00000570062 LGALS9O00182 355 aa6.14□□□□□ -1.43
VPS39-213ENST00000570062 MRPS12O15235 138 aaKnown RBP6.14□□□□□ -1.43
VPS39-213ENST00000570062 EIF3GO75821 320 aaKnown RBP eCLIP6.14□□□□□ -1.43
VPS39-213ENST00000570062 TCRAP04437 139 aa6.14□□□□□ -1.43
VPS39-213ENST00000570062 LGALS1P09382 135 aaKnown RBP6.14□□□□□ -1.43
VPS39-213ENST00000570062 HILS1P60008 231 aa6.14□□□□□ -1.43
VPS39-213ENST00000570062 KRTAP1-1Q07627 177 aa6.14□□□□□ -1.43
VPS39-213ENST00000570062 FOXL1Q12952 345 aa6.14□□□□□ -1.43
VPS39-213ENST00000570062 KIAA0141Q14154 515 aaPredicted RBP6.14□□□□□ -1.43
VPS39-213ENST00000570062 RPEL1Q2QD12 228 aa6.14□□□□□ -1.43
VPS39-213ENST00000570062 SAPCD1Q5SSQ6 148 aa6.14□□□□□ -1.43
VPS39-213ENST00000570062 BAGE2Q86Y30 109 aa6.14□□□□□ -1.43
VPS39-213ENST00000570062 TMEM75Q8N9X5 138 aa6.14□□□□□ -1.43
VPS39-213ENST00000570062 SFRP2Q96HF1 295 aa6.14□□□□□ -1.43
VPS39-213ENST00000570062 C20orf24Q9BUV8 137 aa6.14□□□□□ -1.43
VPS39-213ENST00000570062 S4R3C0 116 aa6.14□□□□□ -1.43
VPS39-213ENST00000570062 WNK2Q9Y3S1 2297 aa6.14□□□□□ -1.43
VPS39-213ENST00000570062 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.14□□□□□ -1.432e-7■■■□□ 16.3
VPS39-213ENST00000570062 NBEAL1Q6ZS30 2694 aa6.13□□□□□ -1.43
VPS39-213ENST00000570062 A0A1B0GUS0 222 aa6.13□□□□□ -1.43
VPS39-213ENST00000570062 RBAKDNA6NC62 111 aa6.13□□□□□ -1.43
VPS39-213ENST00000570062 SCO1O75880 301 aa6.13□□□□□ -1.43
VPS39-213ENST00000570062 NDUFA7O95182 113 aa6.13□□□□□ -1.43
VPS39-213ENST00000570062 GCGP01275 180 aa6.13□□□□□ -1.43
VPS39-213ENST00000570062 COX19Q49B96 90 aa6.13□□□□□ -1.43
VPS39-213ENST00000570062 CENPWQ5EE01 88 aa6.13□□□□□ -1.43
VPS39-213ENST00000570062 LEMD1Q68G75 181 aa6.13□□□□□ -1.43
VPS39-213ENST00000570062 C16orf54Q6UWD8 224 aa6.13□□□□□ -1.43
VPS39-213ENST00000570062 SIGLEC15Q6ZMC9 328 aa6.13□□□□□ -1.43
VPS39-213ENST00000570062 FAM231DQ6ZW35 169 aa6.13□□□□□ -1.43
VPS39-213ENST00000570062 REC114Q7Z4M0 266 aa6.13□□□□□ -1.43
VPS39-213ENST00000570062 KLHDC1Q8N7A1 406 aa6.13□□□□□ -1.43
VPS39-213ENST00000570062 OR10G8Q8NGN5 311 aa6.13□□□□□ -1.43
VPS39-213ENST00000570062 OCC1Q8TAD7 63 aa6.13□□□□□ -1.43
VPS39-213ENST00000570062 ISOC2Q96AB3 205 aa6.13□□□□□ -1.43
VPS39-213ENST00000570062 KLK15Q9H2R5 256 aa6.13□□□□□ -1.43
VPS39-213ENST00000570062 OSTCQ9NRP0 149 aa6.13□□□□□ -1.43
VPS39-213ENST00000570062 SERTAD4Q9NUC0 356 aa6.13□□□□□ -1.43
VPS39-213ENST00000570062 PEMTQ9UBM1 199 aa6.13□□□□□ -1.43
VPS39-213ENST00000570062 TRBV24-1A0A075B6N3 115 aa6.12□□□□□ -1.43
VPS39-213ENST00000570062 ZNF320A2RRD8 509 aa6.12□□□□□ -1.43
VPS39-213ENST00000570062 PPP5D1E7EU14 171 aa6.12□□□□□ -1.43
VPS39-213ENST00000570062 FOLR2P14207 255 aa6.12□□□□□ -1.43
VPS39-213ENST00000570062 ERVFC1-1P60608 527 aa6.12□□□□□ -1.43
VPS39-213ENST00000570062 TMEM88Q6PEY1 159 aa6.12□□□□□ -1.43
VPS39-213ENST00000570062 DPF1Q92782 380 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms