RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 PFDN1O60925 122 aa6.87□□□□□ -1.31
VPS35-211ENST00000569950 TPT1P13693 172 aaKnown RBP6.87□□□□□ -1.31
VPS35-211ENST00000569950 BMI1P35226 326 aa6.87□□□□□ -1.31
VPS35-211ENST00000569950 CD81P60033 236 aa6.87□□□□□ -1.31
VPS35-211ENST00000569950 RHOBP62745 196 aa6.87□□□□□ -1.31
VPS35-211ENST00000569950 ACOT6Q3I5F7 207 aaPredicted RBP6.87□□□□□ -1.31
VPS35-211ENST00000569950 SLC51BQ86UW2 128 aa6.87□□□□□ -1.31
VPS35-211ENST00000569950 BPIFA4PQ86YQ2 179 aa6.87□□□□□ -1.31
VPS35-211ENST00000569950 WFDC3Q8IUB2 231 aa6.87□□□□□ -1.31
VPS35-211ENST00000569950 DEFB125Q8N687 156 aa6.87□□□□□ -1.31
VPS35-211ENST00000569950 PPP1R14BQ96C90 147 aa6.87□□□□□ -1.31
VPS35-211ENST00000569950 NARS2Q96I59 477 aaKnown RBP6.87□□□□□ -1.31
VPS35-211ENST00000569950 ZNF331Q9NQX6 463 aaPredicted RBP6.87□□□□□ -1.31
VPS35-211ENST00000569950 UBQLN2Q9UHD9 624 aa6.87□□□□□ -1.31
VPS35-211ENST00000569950 RBMY1BA6NDE4 496 aaKnown RBP6.86□□□□□ -1.31
VPS35-211ENST00000569950 RBMY1EA6NEQ0 496 aaKnown RBP6.86□□□□□ -1.31
VPS35-211ENST00000569950 ISLRO14498 428 aa6.86□□□□□ -1.31
VPS35-211ENST00000569950 OR10J4P0C629 311 aa6.86□□□□□ -1.31
VPS35-211ENST00000569950 RBMY1DP0C7P1 496 aaKnown RBP6.86□□□□□ -1.31
VPS35-211ENST00000569950 ZNF688P0C7X2 276 aa6.86□□□□□ -1.31
VPS35-211ENST00000569950 ARL14EPLP0DKL9 152 aa6.86□□□□□ -1.31
VPS35-211ENST00000569950 PRB4P10163 310 aaPredicted RBP6.86□□□□□ -1.31
VPS35-211ENST00000569950 HIST1H1EP10412 219 aaKnown RBP6.86□□□□□ -1.31
VPS35-211ENST00000569950 GALR1P47211 349 aa6.86□□□□□ -1.31
VPS35-211ENST00000569950 CDC34P49427 236 aaPredicted RBP6.86□□□□□ -1.31
VPS35-211ENST00000569950 DEFA6Q01524 100 aa6.86□□□□□ -1.31
VPS35-211ENST00000569950 GDF5OSQ5U4N7 250 aa6.86□□□□□ -1.31
VPS35-211ENST00000569950 APRG1Q8IVJ8 170 aa6.86□□□□□ -1.31
VPS35-211ENST00000569950 RNF182Q8N6D2 247 aa6.86□□□□□ -1.31
VPS35-211ENST00000569950 PHYHIPLQ96FC7 376 aa6.86□□□□□ -1.31
VPS35-211ENST00000569950 PFDN2Q9UHV9 154 aa6.86□□□□□ -1.31
VPS35-211ENST00000569950 CTXND1A0A1B0GTU2 59 aa6.85□□□□□ -1.31
VPS35-211ENST00000569950 A8MTW9 85 aa6.85□□□□□ -1.31
VPS35-211ENST00000569950 OR11H12B2RN74 326 aa6.85□□□□□ -1.31
VPS35-211ENST00000569950 ZNF253O75346 499 aa6.85□□□□□ -1.31
VPS35-211ENST00000569950 MBP02144 154 aa6.85□□□□□ -1.31
VPS35-211ENST00000569950 GIG44P09565 113 aaPredicted RBP6.85□□□□□ -1.31
VPS35-211ENST00000569950 IGHV4-30-4P0DP06 118 aa6.85□□□□□ -1.31
VPS35-211ENST00000569950 PSMB3P49720 205 aa6.85□□□□□ -1.31
VPS35-211ENST00000569950 SULT1A2P50226 295 aa6.85□□□□□ -1.31
VPS35-211ENST00000569950 DEFB131AP59861 70 aa6.85□□□□□ -1.31
VPS35-211ENST00000569950 RPL11P62913 178 aaKnown RBP6.85□□□□□ -1.31
VPS35-211ENST00000569950 FAM74A1Q5RGS3 127 aa6.85□□□□□ -1.31
VPS35-211ENST00000569950 MBD3L1Q8WWY6 194 aa6.85□□□□□ -1.31
VPS35-211ENST00000569950 PAXXQ9BUH6 204 aa6.85□□□□□ -1.31
VPS35-211ENST00000569950 OR51M1Q9H341 326 aa6.85□□□□□ -1.31
VPS35-211ENST00000569950 TMPRSS5Q9H3S3 457 aa6.85□□□□□ -1.31
VPS35-211ENST00000569950 KNCNA6PVL3 124 aa6.84□□□□□ -1.31
VPS35-211ENST00000569950 UMAD1C9J7I0 102 aa6.84□□□□□ -1.31
VPS35-211ENST00000569950 PRAC2D3DTV9 90 aa6.84□□□□□ -1.31
VPS35-211ENST00000569950 F6UB75 175 aa6.84□□□□□ -1.31
VPS35-211ENST00000569950 M0R3E3 92 aa6.84□□□□□ -1.31
VPS35-211ENST00000569950 DNASE2O00115 360 aaPredicted RBP6.84□□□□□ -1.31
VPS35-211ENST00000569950 NBEAP1P0C6P0 100 aa6.84□□□□□ -1.31
VPS35-211ENST00000569950 ATF4P18848 351 aaPredicted RBP6.84□□□□□ -1.31
VPS35-211ENST00000569950 GCHFRP30047 84 aa6.84□□□□□ -1.31
VPS35-211ENST00000569950 MEOX2P50222 304 aa6.84□□□□□ -1.31
VPS35-211ENST00000569950 PDE6HQ13956 83 aa6.84□□□□□ -1.31
VPS35-211ENST00000569950 KHDC3LQ587J8 217 aa6.84□□□□□ -1.31
VPS35-211ENST00000569950 PSMG4Q5JS54 123 aa6.84□□□□□ -1.31
VPS35-211ENST00000569950 LCN15Q6UWW0 184 aa6.84□□□□□ -1.31
VPS35-211ENST00000569950 PQLC2Q6ZP29 291 aa6.84□□□□□ -1.31
VPS35-211ENST00000569950 RNF141Q8WVD5 230 aa6.84□□□□□ -1.31
VPS35-211ENST00000569950 A0A0J9YX75 114 aa6.83□□□□□ -1.32
VPS35-211ENST00000569950 ZNF705FA8MVS1 300 aaPredicted RBP6.83□□□□□ -1.32
VPS35-211ENST00000569950 OR7C2O60412 319 aa6.83□□□□□ -1.32
VPS35-211ENST00000569950 FRMD6-AS1P0C7T7 363 aa6.83□□□□□ -1.32
VPS35-211ENST00000569950 S100A7P31151 101 aa6.83□□□□□ -1.32
VPS35-211ENST00000569950 FGF8P55075 233 aaPredicted RBP6.83□□□□□ -1.32
VPS35-211ENST00000569950 EIF5AP63241 154 aaKnown RBP6.83□□□□□ -1.32
VPS35-211ENST00000569950 UBE2L3P68036 154 aaKnown RBP6.83□□□□□ -1.32
VPS35-211ENST00000569950 PAFAH1B2P68402 229 aa6.83□□□□□ -1.32
VPS35-211ENST00000569950 CCL20P78556 96 aa6.83□□□□□ -1.32
VPS35-211ENST00000569950 PSG3Q16557 428 aa6.83□□□□□ -1.32
VPS35-211ENST00000569950 GUK1Q16774 197 aa6.83□□□□□ -1.32
VPS35-211ENST00000569950 AKR1C8PQ5T2L2 129 aa6.83□□□□□ -1.32
VPS35-211ENST00000569950 AMTNQ6UX39 209 aa6.83□□□□□ -1.32
VPS35-211ENST00000569950 ALKAL2Q6UX46 152 aa6.83□□□□□ -1.32
VPS35-211ENST00000569950 S100A7AQ86SG5 101 aa6.83□□□□□ -1.32
VPS35-211ENST00000569950 TRPT1Q86TN4 253 aaKnown RBP6.83□□□□□ -1.32
VPS35-211ENST00000569950 GTSCR1Q86UQ5 136 aa6.83□□□□□ -1.32
VPS35-211ENST00000569950 EXOC3-AS1Q8N2X6 119 aa6.83□□□□□ -1.32
VPS35-211ENST00000569950 FAM213BQ8TBF2 198 aa6.83□□□□□ -1.32
VPS35-211ENST00000569950 ACTR3CQ9C0K3 210 aaPredicted RBP6.83□□□□□ -1.32
VPS35-211ENST00000569950 SRD5A3Q9H8P0 318 aa6.83□□□□□ -1.32
VPS35-211ENST00000569950 ZMAT5Q9UDW3 170 aaKnown RBP6.83□□□□□ -1.32
VPS35-211ENST00000569950 RNF24Q9Y225 148 aa6.83□□□□□ -1.32
VPS35-211ENST00000569950 TRAV1-1A0A0B4J248 108 aa6.82□□□□□ -1.32
VPS35-211ENST00000569950 A0A1W2PPV4 95 aa6.82□□□□□ -1.32
VPS35-211ENST00000569950 MAP1LC3B2A6NCE7 125 aa6.82□□□□□ -1.32
VPS35-211ENST00000569950 GGTLC3B5MD39 225 aa6.82□□□□□ -1.32
VPS35-211ENST00000569950 H3BMM0 161 aa6.82□□□□□ -1.32
VPS35-211ENST00000569950 HLA-DRB4P13762 266 aa6.82□□□□□ -1.32
VPS35-211ENST00000569950 TAS2R45P59539 299 aa6.82□□□□□ -1.32
VPS35-211ENST00000569950 IFITM2Q01629 132 aa6.82□□□□□ -1.32
VPS35-211ENST00000569950 DPPA3Q6W0C5 159 aa6.82□□□□□ -1.32
VPS35-211ENST00000569950 BLNKQ8WV28 456 aa6.82□□□□□ -1.32
VPS35-211ENST00000569950 C16orf92Q96LL3 132 aa6.82□□□□□ -1.32
VPS35-211ENST00000569950 SLC50A1Q9BRV3 221 aa6.82□□□□□ -1.32
VPS35-211ENST00000569950 MAP1LC3BQ9GZQ8 125 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 169.4 ms