RNA–Protein interactions for RNA: ENST00000569422.1

LINC00558-201, long intergenic non-protein coding RNA 558, humanhuman

TSL 1 (best) BASIC

Gene LINC00558, Length 3,163 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00558-201ENST00000569422 DPM3Q9P2X0 92 aa6.95□□□□□ -1.3
LINC00558-201ENST00000569422 ARL2-SNX15V9GYD0 113 aa6.95□□□□□ -1.3
LINC00558-201ENST00000569422 AMY1AP04745 511 aa6.94□□□□□ -1.3
LINC00558-201ENST00000569422 CRYGBP07316 175 aa6.94□□□□□ -1.3
LINC00558-201ENST00000569422 TPTE2P1Q5T6R2 138 aa6.94□□□□□ -1.3
LINC00558-201ENST00000569422 RNASEKQ6P5S7 137 aaKnown RBP6.94□□□□□ -1.3
LINC00558-201ENST00000569422 ZNF705AQ6ZN79 300 aaPredicted RBP6.94□□□□□ -1.3
LINC00558-201ENST00000569422 GOLT1AQ6ZVE7 132 aa6.94□□□□□ -1.3
LINC00558-201ENST00000569422 BCL6BQ8N143 479 aaPredicted RBP6.94□□□□□ -1.3
LINC00558-201ENST00000569422 TRGV9Q99603 122 aa6.94□□□□□ -1.3
LINC00558-201ENST00000569422 SIRPDQ9H106 197 aa6.94□□□□□ -1.3
LINC00558-201ENST00000569422 RNF114Q9Y508 228 aa6.94□□□□□ -1.3
LINC00558-201ENST00000569422 TIMM8BQ9Y5J9 83 aaPredicted RBP6.94□□□□□ -1.3
LINC00558-201ENST00000569422 SPG11Q96JI7 2443 aa6.94□□□□□ -1.3
LINC00558-201ENST00000569422 BMPR1BO00238 502 aa6.94□□□□□ -1.3
LINC00558-201ENST00000569422 IGLC1P0CG04 106 aa6.94□□□□□ -1.3
LINC00558-201ENST00000569422 CIARTQ8N365 385 aaPredicted RBP6.94□□□□□ -1.3
LINC00558-201ENST00000569422 C8orf46Q8TAG6 207 aa6.94□□□□□ -1.3
LINC00558-201ENST00000569422 SLC25A39Q9BZJ4 359 aaPredicted RBP6.94□□□□□ -1.3
LINC00558-201ENST00000569422 UBTD1Q9HAC8 227 aa6.94□□□□□ -1.3
LINC00558-201ENST00000569422 ZFHX3Q15911 3703 aa6.94□□□□□ -1.3
LINC00558-201ENST00000569422 SMIM27A0A1W2PRY6 76 aa6.94□□□□□ -1.3
LINC00558-201ENST00000569422 TMEM213A2RRL7 107 aa6.94□□□□□ -1.3
LINC00558-201ENST00000569422 IL4P05112 153 aa6.94□□□□□ -1.3
LINC00558-201ENST00000569422 FCGR2BP31994 310 aaPredicted RBP6.94□□□□□ -1.3
LINC00558-201ENST00000569422 FOXA3P55318 350 aaPredicted RBP6.94□□□□□ -1.3
LINC00558-201ENST00000569422 PGLYRP4Q96LB8 373 aa6.94□□□□□ -1.3
LINC00558-201ENST00000569422 VPS13CQ709C8 3753 aa6.93□□□□□ -1.3
LINC00558-201ENST00000569422 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.93□□□□□ -1.3
LINC00558-201ENST00000569422 IZUMO1RA6ND01 250 aa6.93□□□□□ -1.3
LINC00558-201ENST00000569422 NBR2O15453 112 aa6.93□□□□□ -1.3
LINC00558-201ENST00000569422 EDN2P20800 178 aa6.93□□□□□ -1.3
LINC00558-201ENST00000569422 BRS3P32247 399 aa6.93□□□□□ -1.3
LINC00558-201ENST00000569422 ATOH7Q8N100 152 aa6.93□□□□□ -1.3
LINC00558-201ENST00000569422 ZNF586Q9NXT0 402 aa6.93□□□□□ -1.3
LINC00558-201ENST00000569422 SS18L2Q9UHA2 77 aa6.93□□□□□ -1.3
LINC00558-201ENST00000569422 HIVEP3Q5T1R4 2406 aa6.93□□□□□ -1.3
LINC00558-201ENST00000569422 A0A1W2PPR1 153 aa6.93□□□□□ -1.3
LINC00558-201ENST00000569422 IGKV1-17P01599 117 aa6.93□□□□□ -1.3
LINC00558-201ENST00000569422 GP9P14770 177 aa6.93□□□□□ -1.3
LINC00558-201ENST00000569422 GDF5OSQ5U4N7 250 aa6.93□□□□□ -1.3
LINC00558-201ENST00000569422 DYNAPQ8N1N2 210 aa6.93□□□□□ -1.3
LINC00558-201ENST00000569422 FBXL7Q9UJT9 491 aa6.93□□□□□ -1.3
LINC00558-201ENST00000569422 TRAV9-1A0A075B6T8 112 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 SH2D7A6NKC9 451 aaPredicted RBP6.92□□□□□ -1.3
LINC00558-201ENST00000569422 I3L2K1 104 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 GNG7O60262 68 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 TCRAP04437 139 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 HIST1H1EP10412 219 aaKnown RBP6.92□□□□□ -1.3
LINC00558-201ENST00000569422 BATFQ16520 125 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 Q56UQ5 140 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 GPR82Q96P67 336 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 VWC2LB2RUY7 222 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 M0R3E3 92 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 P01737 135 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 HLA-DQA1P01909 254 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 ZFP36P26651 326 aaKnown RBP6.92□□□□□ -1.3
LINC00558-201ENST00000569422 CKS1BP61024 79 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 FOXE3Q13461 319 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 TMEM183BQ1AE95 376 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 VMO1Q7Z5L0 202 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 GRAMD2BQ96HH9 432 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 MAP1LC3CQ9BXW4 147 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 A0A1W2PS18 150 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 LY6LH3BQJ8 138 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 K7EIM0 57 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 MT-ND6P03923 174 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 GPX1P07203 203 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 COL8A1P27658 744 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 PAFAH1B2P68402 229 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 PMCHL1Q16048 86 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 IGFL4Q6B9Z1 124 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 MTURNQ8N3F0 131 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 C5orf17Q8NAS9 161 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 NRN1Q9NPD7 142 aa6.92□□□□□ -1.3
LINC00558-201ENST00000569422 IGHV3OR16-10A0A075B7F0 116 aa6.91□□□□□ -1.3
LINC00558-201ENST00000569422 TRBV9A0A0B4J1U6 114 aa6.91□□□□□ -1.3
LINC00558-201ENST00000569422 A8MZ25 164 aa6.91□□□□□ -1.3
LINC00558-201ENST00000569422 OR2J3O76001 311 aa6.91□□□□□ -1.3
LINC00558-201ENST00000569422 MYCNOSP40205 109 aa6.91□□□□□ -1.3
LINC00558-201ENST00000569422 SMIM20Q8N5G0 67 aa6.91□□□□□ -1.3
LINC00558-201ENST00000569422 OR9G4Q8NGQ1 327 aa6.91□□□□□ -1.3
LINC00558-201ENST00000569422 TMSB15BA0A087X1C1 80 aa6.91□□□□□ -1.3
LINC00558-201ENST00000569422 MUC21A0A0G2JKD1 596 aa6.91□□□□□ -1.3
LINC00558-201ENST00000569422 MUC21A0A140T8X8 626 aa6.91□□□□□ -1.3
LINC00558-201ENST00000569422 OR2T8A6NH00 312 aa6.91□□□□□ -1.3
LINC00558-201ENST00000569422 DIRC3C9JPN6 131 aa6.91□□□□□ -1.3
LINC00558-201ENST00000569422 UCNP55089 124 aa6.91□□□□□ -1.3
LINC00558-201ENST00000569422 NDPQ00604 133 aa6.91□□□□□ -1.3
LINC00558-201ENST00000569422 MUC21Q5SSG8 566 aa6.91□□□□□ -1.3
LINC00558-201ENST00000569422 SIGLEC15Q6ZMC9 328 aa6.91□□□□□ -1.3
LINC00558-201ENST00000569422 TSKUQ8WUA8 353 aa6.91□□□□□ -1.3
LINC00558-201ENST00000569422 HSBP1O75506 76 aa6.9□□□□□ -1.3
LINC00558-201ENST00000569422 UQCRFS1P47985 274 aa6.9□□□□□ -1.3
LINC00558-201ENST00000569422 RPS20P60866 119 aaKnown RBP6.9□□□□□ -1.3
LINC00558-201ENST00000569422 Q0VG73 95 aa6.9□□□□□ -1.3
LINC00558-201ENST00000569422 CELSR1Q9NYQ6 3014 aa6.9□□□□□ -1.3
LINC00558-201ENST00000569422 K7ERU9 68 aa6.9□□□□□ -1.31
LINC00558-201ENST00000569422 UBE2V1Q13404 147 aa6.9□□□□□ -1.31
LINC00558-201ENST00000569422 VAMP3Q15836 100 aa6.9□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms